Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq43 163 4e-35 seq23 147 3e-30 >seq43 Length=605699 Score = 163 bits (180), Expect = 4e-35 Identities = 570/873 (65%), Gaps = 24/873 (3%) Strand=Plus/Minus Query 62743 CAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATTAT 62802 ||| |||| || || ||||| || || || ||||||| | ||| || | | || Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 62803 CTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTT 62862 ||| || || | || || ||||||||||| || | || | || || ||| ||| Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 62863 ACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGC 62922 || || ||||| || || ||||| ||| | || || ||| | || | || | ||| || Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 62923 TTTCCAGACGACTC-GAGCCTTTATTATAGATTTGTATCTCTTTTCT---CTT-TCGTAT 62977 | ||| | | || | ||||| || | | | || | || | ||| ||||| Sbjct 33897 GTACCACA-GCTTCTGTGCCTTGAT----GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843 Query 62978 AGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCATCC 63037 || ||||| ||| || || || || | || | || || ||||||||||| | Sbjct 33842 TTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG 33783 Query 63038 GGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATC 63097 || ||||| | ||||||||| || | |||| ||| || ||||| ||||||||||| ||| Sbjct 33782 GGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATC 33723 Query 63098 CAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAG 63156 || ||||| ||| || | || | | | || || || || ||||| | Sbjct 33722 CAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAA 33664 Query 63157 ATCGAGGAACGCCATA-ATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAG 63215 || ||||| |||| | || || | ||||| || || | ||| || || | | || | Sbjct 33663 GTCAAGGAA-GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTG 33605 Query 63216 GCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTG 63275 | || ||||| || || || || | || || || ||||| || | || | || ||| | Sbjct 33604 GACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGG 33545 Query 63276 GAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAAT-- 63333 | || || || |||||||||||||| || || | || || || || | ||||| || Sbjct 33544 GGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGC 33485 Query 63334 ATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTT-A 63392 | | |||| ||||| || || || || | |||||||| | || || |||||| | Sbjct 33484 AGTGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACA-CGTTTTGA 33428 Query 63393 ACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA--GCTAGA 63450 || || |||||||| || || |||||| |||| | | || || || | ||| Sbjct 33427 GTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGA 33368 Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510 | ||| | | || || || || || | |||||| || ||||| || || || Sbjct 33367 GTTGTGGGTTGGGC--GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTT 33310 Query 63511 TTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTAC 63570 ||| | || ||||| |||||||| || || || || |||||| || || Sbjct 33309 GGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAAC 33250 Query 63571 TGCGACACGCATTAACATGTGCTGAGGTCTTTC 63603 ||||||||||| | ||||||||| ||||| || Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 147 bits (162), Expect = 3e-30 Identities = 395/591 (67%), Gaps = 25/591 (4%) Strand=Plus/Minus Query 32650 TAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGG 32709 |||||| | ||| |||||||| ||| ||||||||||| | | || | || ||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 32710 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGATC 32769 ||| |||||||| ||||| || |||||||| || |||||||| ||||| || || || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 32770 CAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA-----AC- 32823 |||| || || ||||| || || || ||||| || | ||| | | | || | || Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 32824 CGGCG-CTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATT 32882 || || ||| || ||||| | ||||| || || || | || | || || ||| Sbjct 88774 CGTCGTCTG-CA---ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATT 88719 Query 32883 GTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATC 32942 ||||| || |||| ||||| | | || | || || | ||||||||||| Sbjct 88718 GTCTCGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATG 88659 Query 32943 AAAAGACTATACATTTCCGAATGAATGTTTT---CAATGGCCATTTGAAATCCGTAGAAG 32999 | || || | || || || ||||||| | ||| || || || || |||||| Sbjct 88658 AGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGAAG 88602 Query 33000 CATCTAGCCTC-GGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 33058 |||| ||||| |||| | || ||||| | | || || || ||||||||||| || Sbjct 88601 CATCGTGCCTCTGGTACT-TGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGAC 88543 Query 33059 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC-TG 33117 || || |||||||| ||||| || || | || || || || | |||||| | Sbjct 88542 AATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTC 88483 Query 33118 GTGTTAGTTTATT---CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCC 33174 || | || || || ||| || | | || || || | || | || || | |||| Sbjct 88482 GT-TGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCC 88424 Query 33175 AAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGATA-TTGA 33224 | || ||||| ||||||||||| ||||| | ||| || || ||||| |||| Sbjct 88423 AGAAGGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGA 88373 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633631651502400