Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq43 125 6e-24
>seq43
Length=605699
Score = 125 bits (138), Expect = 6e-24
Identities = 152/205 (74%), Gaps = 4/205 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | || || || |||||||| |||| || ||||| ||
Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || || || ||| || || ||||| || || ||||||||||| |
Sbjct 451274 GACACCATTGA--CAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATC 451217
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | |||||||| ||||| || | || |||| ||||||| ||| ||| ||||
Sbjct 451216 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACA 451157
Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201
||||||| || || || || || ||
Sbjct 451156 ATATTCAGAAGGAGTCAACCCTCCA 451132
Score = 123 bits (136), Expect = 2e-23
Identities = 169/232 (73%), Gaps = 8/232 (3%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || |||||| |||| || || |||||||| |||| || ||||| ||
Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| ||||| | ||| ||||| ||||| |||||||||||
Sbjct 450590 GACACCATTGACAACGTCAAG--AGCAAGAT-TCAA-GACAAGGAAGGTATTCCACCTGA 450535
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | || ||||| || || || | || |||| ||||||| ||| ||| ||
Sbjct 450534 CCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTA 450475
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226
||| ||||| || || || || | || || ||| | | || | ||||||
Sbjct 450474 CAACATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGGA 450423
Score = 114 bits (126), Expect = 1e-20
Identities = 155/214 (72%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| || || ||||| ||||| || || |||| ||| | || || ||||| ||
Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || || || ||| || ||| ||||| ||||| || ||||||||||
Sbjct 451046 GACACCATTGA--CAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 450989
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||||| | |||||||| ||||| || | || || | ||||||| ||| || ||||
Sbjct 450988 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACA 450929
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || || || || || || || | |||||
Sbjct 450928 ACATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 450895
Score = 104 bits (114), Expect = 2e-17
Identities = 155/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||||||||| || || |||| ||| ||||||| || || ||
Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| ||||| | ||| ||||| || || |||||||||||
Sbjct 450818 GACACCATTGACAACGTCAAG--AGCAAGAT-TCAA-GACAAGGAGGGCATTCCACCTGA 450763
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| ||||| | |||||||| ||||| || | || || | ||||| | | || ||
Sbjct 450762 CCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTA 450703
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||| || || || || || || || | |||||
Sbjct 450702 CAATATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 450667
Score = 89.7 bits (98), Expect = 4e-13
Identities = 148/209 (71%), Gaps = 6/209 (3%)
Strand=Plus/Minus
Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064
|| ||||| ||||| | || || || |||| || | || || || || || |||||
Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497
Query 25065 ATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121
|| || || || ||| | |||| ||| ||||| |||||||||||||| ||||| |||
Sbjct 451496 ATTGA--CAATGTCAAGTCGAAAATTCAG-GACAAGGAAGGGATTCCACCGGACCAGCAG 451440
Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181
|| | ||||| || || || || | ||||||| |||||| | | || ||||| ||
Sbjct 451439 CGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATC 451380
Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || || || || || || | |||||
Sbjct 451379 CAGAAGGAGTCAACTCTCCACCTTGTGCT 451351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433327767627860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |