Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq43 125 6e-24 >seq43 Length=605699 Score = 125 bits (138), Expect = 6e-24 Identities = 152/205 (74%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | || || || |||||||| |||| || ||||| || Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || || ||||| || || ||||||||||| | Sbjct 451274 GACACCATTGA--CAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATC 451217 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | |||||||| ||||| || | || |||| ||||||| ||| ||| |||| Sbjct 451216 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACA 451157 Query 25177 ATATTCAAAAAGAATCCACGCTACA 25201 ||||||| || || || || || || Sbjct 451156 ATATTCAGAAGGAGTCAACCCTCCA 451132 Score = 123 bits (136), Expect = 2e-23 Identities = 169/232 (73%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || |||||| |||| || || |||||||| |||| || ||||| || Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||| | ||| ||||| ||||| ||||||||||| Sbjct 450590 GACACCATTGACAACGTCAAG--AGCAAGAT-TCAA-GACAAGGAAGGTATTCCACCTGA 450535 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | || ||||| || || || | || |||| ||||||| ||| ||| || Sbjct 450534 CCAGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTA 450475 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGA 25226 ||| ||||| || || || || | || || ||| | | || | |||||| Sbjct 450474 CAACATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGGA 450423 Score = 114 bits (126), Expect = 1e-20 Identities = 155/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| || || ||||| ||||| || || |||| ||| | || || ||||| || Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| ||||| || |||||||||| Sbjct 451046 GACACCATTGA--CAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 450989 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||||| | |||||||| ||||| || | || || | ||||||| ||| || |||| Sbjct 450988 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACA 450929 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || || || || || || | ||||| Sbjct 450928 ACATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 450895 Score = 104 bits (114), Expect = 2e-17 Identities = 155/216 (72%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||||||||| || || |||| ||| ||||||| || || || Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| ||||| | ||| ||||| || || ||||||||||| Sbjct 450818 GACACCATTGACAACGTCAAG--AGCAAGAT-TCAA-GACAAGGAGGGCATTCCACCTGA 450763 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| ||||| | |||||||| ||||| || | || || | ||||| | | || || Sbjct 450762 CCAGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTA 450703 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||| || || || || || || || | ||||| Sbjct 450702 CAATATCCAGAAGGAGTCAACTCTCCACCTTGTGCT 450667 Score = 89.7 bits (98), Expect = 4e-13 Identities = 148/209 (71%), Gaps = 6/209 (3%) Strand=Plus/Minus Query 25005 ATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCTGACACT 25064 || ||||| ||||| | || || || |||| || | || || || || || ||||| Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497 Query 25065 ATCGAGTCACTG--AAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAG 25121 || || || || ||| | |||| ||| ||||| |||||||||||||| ||||| ||| Sbjct 451496 ATTGA--CAATGTCAAGTCGAAAATTCAG-GACAAGGAAGGGATTCCACCGGACCAGCAG 451440 Query 25122 CGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATT 25181 || | ||||| || || || || | ||||||| |||||| | | || ||||| || Sbjct 451439 CGTTTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATC 451380 Query 25182 CAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || || || || || || | ||||| Sbjct 451379 CAGAAGGAGTCAACTCTCCACCTTGTGCT 451351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433327767627860