Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq23 149 7e-31
>seq23
Length=690853
Score = 149 bits (164), Expect = 7e-31
Identities = 395/597 (66%), Gaps = 11/597 (2%)
Strand=Plus/Minus
Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151
|| || || || || || | ||| ||||| || || || | ||||||||| || || |
Sbjct 88943 CAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGT 88884
Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211
|| || | || || || |||||||||||||| || || || || ||||| |||||
Sbjct 88883 CCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAG 88824
Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG---CGGAATTACTG 93268
|| || || || || ||||| ||||||| ||| ||||| | | || | |||
Sbjct 88823 ATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGT--CTG 88766
Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328
| ||||| | ||||| || ||||||| ||| || || || | ||| ||||| ||
Sbjct 88765 CA-ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCA 88707
Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388
| || |||| | || | | || ||||||||||| || | || || ||
Sbjct 88706 TCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAG 88647
Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448
| || || |||| || ||| || ||||| || ||||| |||| || || |
Sbjct 88646 GTCTCTGAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGT 88587
Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508
| || ||||| | || || | ||| | | |||||||||||| || ||||| ||
Sbjct 88586 ACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCG 88527
Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAA-ATGTTTCTCATCATCTTTAAGCTTAT---C 93564
||||| ||||| | | || || || | | | || || || || ||||| | |
Sbjct 88526 GCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGT-TCGTCGTCGTTGAGCTTGTTCTC 88468
Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624
||| ||| || || || || || || | || ||| | ||||| || |||||||||||
Sbjct 88467 CCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGC 88408
Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATT 93681
||||||||||| | ||| || || ||||| | || || || | ||| || || ||
Sbjct 88407 CTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGACGAAGCGTTT 88351
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556860493726560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |