Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq23 149 7e-31 >seq23 Length=690853 Score = 149 bits (164), Expect = 7e-31 Identities = 395/597 (66%), Gaps = 11/597 (2%) Strand=Plus/Minus Query 93092 CACGCAAAGTCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAA 93151 || || || || || || | ||| ||||| || || || | ||||||||| || || | Sbjct 88943 CAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGT 88884 Query 93152 CCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaT 93211 || || | || || || |||||||||||||| || || || || ||||| ||||| Sbjct 88883 CCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAG 88824 Query 93212 ATACCTTCCACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTG---CGGAATTACTG 93268 || || || || || ||||| ||||||| ||| ||||| | | || | ||| Sbjct 88823 ATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGT--CTG 88766 Query 93269 CTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCG 93328 | ||||| | ||||| || ||||||| ||| || || || | ||| ||||| || Sbjct 88765 CA-ATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCA 88707 Query 93329 TTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATAC 93388 | || |||| | || | | || ||||||||||| || | || || || Sbjct 88706 TCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAG 88647 Query 93389 ATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTG 93448 | || || |||| || ||| || ||||| || ||||| |||| || || | Sbjct 88646 GTCTCTGAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGT 88587 Query 93449 ATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCT 93508 | || ||||| | || || | ||| | | |||||||||||| || ||||| || Sbjct 88586 ACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCG 88527 Query 93509 GCaaaaaaaGCCAATATATGCTTTATAAA-ATGTTTCTCATCATCTTTAAGCTTAT---C 93564 ||||| ||||| | | || || || | | | || || || || ||||| | | Sbjct 88526 GCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGT-TCGTCGTCGTTGAGCTTGTTCTC 88468 Query 93565 CCAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 ||| ||| || || || || || || | || ||| | ||||| || ||||||||||| Sbjct 88467 CCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGC 88408 Query 93625 TTTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACGATT 93681 ||||||||||| | ||| || || ||||| | || || || | ||| || || || Sbjct 88407 CTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGACGAAGCGTTT 88351 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556860493726560