Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq43 122 7e-23 >seq43 Length=605699 Score = 122 bits (134), Expect = 7e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || ||| | || || || || |||| || || || || | | Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || |||||||||||||| ||||||||||| || || Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| || || ||| | |||||| ||||| | |||| |||||| Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || | || || || ||||| | || ||||| Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGG 450424 Score = 114 bits (126), Expect = 1e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||| | || || || || |||| || || || || | | Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || ||||| ||||||||||| |||||||| ||||| Sbjct 451274 GACACCATTGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 451215 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | |||||| ||||| | |||| ||||| Sbjct 451214 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAT 451155 Query 22399 ATTCAAAAAGAATCCACC 22416 ||||| || || || ||| Sbjct 451154 ATTCAGAAGGAGTCAACC 451137 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| ||||| ||||| || || || || | || || ||||| ||| | | Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| | |||| || ||||||||||||||||| |||||||| || || Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| |||||| | | || ||||| Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 450698 ATCCAGAAGGAGTCAAC 450682 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || || || || || || | || ||||| || || | | Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | ||| || |||| || || ||||||||||| ||||| ||||| || || Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||| ||||| ||| | ||||| ||||| | | || |||||| Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927 Query 22399 ATTCAAAAAGAATCCAC 22415 || || || || || || Sbjct 450926 ATCCAGAAGGAGTCAAC 450910 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192 || || || ||||| || | || || || |||||||||| | ||| | |||||||| Sbjct 34640 ACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAG 34581 Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA-AG 129251 |||||||| || | || || | ||| | ||| |||||||| || || ||| || Sbjct 34580 CATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGC-ACACAACAG 34522 Query 129252 CGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGA 129311 ||||| || | ||| |||| | ||| | | ||| | | ||||||||| | | Sbjct 34521 GGAGTTGCGGATACCATGCTTTGCAATCTGCTCTTTGAGCGTCGCCCAGTCCCAGAGCTT 34462 Query 129312 TGTGGGTGTGTGATTCCACAAGTCGTATTGCAA 129344 ||||||||| |||||||||||| || ||||| Sbjct 34461 GGTGGGTGTGACATTCCACAAGTCATACTGCAA 34429 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727774920860