Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq43 122 7e-23
>seq43
Length=605699
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || ||| | || || || || |||| || || || || | |
Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || |||||||||||||| ||||||||||| || ||
Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| || || ||| | |||||| ||||| | |||| ||||||
Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || || || || | || || || ||||| | || |||||
Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGG 450424
Score = 114 bits (126), Expect = 1e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || ||||| || ||| | || || || || |||| || || || || | |
Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || ||||| ||||||||||| |||||||| |||||
Sbjct 451274 GACACCATTGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 451215
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| ||||| ||| | |||||| ||||| | |||| |||||
Sbjct 451214 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAT 451155
Query 22399 ATTCAAAAAGAATCCACC 22416
||||| || || || |||
Sbjct 451154 ATTCAGAAGGAGTCAACC 451137
Score = 113 bits (124), Expect = 4e-20
Identities = 143/197 (73%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| ||||| ||||| ||||| || || || || | || || ||||| ||| | |
Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| | |||| || ||||||||||||||||| |||||||| || ||
Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| ||||| ||| | ||||| |||||| | | || |||||
Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 450698 ATCCAGAAGGAGTCAAC 450682
Score = 98.7 bits (108), Expect = 8e-16
Identities = 140/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||||||||| || || || || || || || || | || ||||| || || | |
Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || |||| || || ||||||||||| ||||| ||||| || ||
Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| ||||| || ||||| ||||| ||| | ||||| ||||| | | || ||||||
Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927
Query 22399 ATTCAAAAAGAATCCAC 22415
|| || || || || ||
Sbjct 450926 ATCCAGAAGGAGTCAAC 450910
Score = 84.2 bits (92), Expect = 2e-11
Identities = 148/213 (69%), Gaps = 2/213 (1%)
Strand=Plus/Minus
Query 129133 ACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAAC 129192
|| || || ||||| || | || || || |||||||||| | ||| | ||||||||
Sbjct 34640 ACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAG 34581
Query 129193 GATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAA-AG 129251
|||||||| || | || || | ||| | ||| |||||||| || || ||| ||
Sbjct 34580 CATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGC-ACACAACAG 34522
Query 129252 CGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGA 129311
||||| || | ||| |||| | ||| | | ||| | | ||||||||| | |
Sbjct 34521 GGAGTTGCGGATACCATGCTTTGCAATCTGCTCTTTGAGCGTCGCCCAGTCCCAGAGCTT 34462
Query 129312 TGTGGGTGTGTGATTCCACAAGTCGTATTGCAA 129344
||||||||| |||||||||||| || |||||
Sbjct 34461 GGTGGGTGTGACATTCCACAAGTCATACTGCAA 34429
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419727774920860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |