Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11 143 5e-29 seq23 111 3e-19 seq3 107 4e-18 seq43 84.2 4e-11 >seq11 Length=330268 Score = 143 bits (158), Expect = 5e-29 Identities = 376/560 (67%), Gaps = 34/560 (6%) Strand=Plus/Minus Query 218502 CAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATG 218557 ||| || ||| || ||||||||||| |||||||||||||||| ||||| |||| | Sbjct 286542 CAAGATTCCCATCGCTGACTTCATCAACAAGGAGCTCATTCTCTTCTCAATGGCGG-ACA 286484 Query 218558 ATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCC 218617 | | ||||| ||||||| ||| ||||||| |||||||| |||||||| || Sbjct 286483 ACATT---CGTTCCATTCCCAACGTCATGGATGGTTTCAAGCCAGGACAGCGTAAAATTT 286427 Query 218618 TCTTTGCCGCATTCAAGCGGAACCTGGTTCAAG----AAATTAAGGTCGCTCAGTTTTCT 218673 | ||||| |||||||| || || |||| |||| ||||| |||||| | | | Sbjct 286426 TGTTTGCTTGCTTCAAGCGCAAGCT----CAAGGCGGAAATCAAGGTTGCTCAGCTCTGT 286371 Query 218674 GGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCC 218730 || || || ||| ||| ||||||||||||||| || || |||| | || Sbjct 286370 GGCTACGTTGGCGAGCACACTGCCTACCATCACGGTGA--AGTCTCCCTTGCACAG-ACC 286314 Query 218731 ATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAAC 218790 ||||| ||| |||| || || ||||||| |||||||| || | || | ||||| Sbjct 286313 ATTGTCGGCTTGGCTCAATCCTTTGTGGGCGCAAACAACATCAATGTCTTGATGCCCAAT 286254 Query 218791 GGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTT 218850 ||||| || ||| | |||| |||||| || ||| ||| || | || |||||| Sbjct 286253 GGTCAATTCGGTACACGTCACCAGGGTGGTAAAGATGCTGCCAGCGCGCGTTACATCTTT 286194 Query 218851 ACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATG----TGCTCCT 218906 ||| | ||| | | | | || || | || | || ||| ||| ||||| Sbjct 286193 ACAGACTTGGCTCGCATCACAAAAAAGATCTTTTGCGAAGCAGAT-ATGCCATTGCTC-- 286137 Query 218907 TAAGTATCTTGAG-GACGATGGT-TCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATT 218964 || || | |||| || || ||| || | | | ||||| || ||||||| ||| | | Sbjct 286136 -AATTA-CCTGAGCGATGACGGTCTCAT-GGTAGAGCCAGAATGGTATGCGCCAGTGCTG 286080 Query 218965 CCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCT 219024 || | |||| || || ||| || ||||| || || || | || |||||||| Sbjct 286079 CCTATGCTGCTAGTCAACGGTACCTCGGGTATTGGTACTGGCTGGTCCACAGACATTCCA 286020 Query 219025 TCTTACAATCCCAAGGACAT 219044 || ||||||||||||||| Sbjct 286019 AATTTCAATCCCAAGGACAT 286000 >seq23 Length=690853 Score = 111 bits (122), Expect = 3e-19 Identities = 376/572 (66%), Gaps = 19/572 (3%) Strand=Plus/Minus Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903 ||| ||||||||||| ||| ||||| ||| ||| | || || ||||| | || Sbjct 88929 GTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACC 88870 Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 ||| ||| ||||||| ||||| | | || || |||||||| | | ||||||||| Sbjct 88869 ACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGC 88810 Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTC--CTGCGA-CAAGAACTTCTG 252017 | | || ||||| ||| ||||| |||| ||| |||| | | || | | Sbjct 88809 AGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGCAATCCAG---CGCAG 88753 Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGT 252076 |||||| ||| ||| || | || |||||||| ||||||||||| ||||| | Sbjct 88752 TGCCCAGTCTG-CTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGCT 88694 Query 252077 TCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGA 252136 ||| | || | |||| |||| | ||||| ||||| ||||| |||| || |||| Sbjct 88693 GCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGTGGA 88634 Query 252137 TGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCG 252196 || ||| | |||||| | ||||||| || || || | |||||| Sbjct 88633 TGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGACTTCGT 88574 Query 252197 TGGA-AAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCA 252255 |||| ||| |||| || || | || |||||||| ||| | |||||||| | Sbjct 88573 TGGAGAAACGCTCGAGCAA-ATTTTCATTGACAATGCCATCACTGGCGGCAAAGAAAGCG 88515 Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315 || | | ||||||| || || |||||||||||||||| ||||||| | | Sbjct 88514 AGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTGCAGG 88455 Query 252316 TCCTGATTCAGAGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACA 252373 |||| | ||||| || || || | |||||||| | | | ||||| ||||||| Sbjct 88454 TCCT--TGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTACA 88397 Query 252374 -TTGCGAACACATCAGGGTACTTGATTGGGAA 252404 |||| || | || | |||||||| ||||| Sbjct 88396 TTTGCCAA-ATCTCGTGATACTTGATGGGGAA 88366 >seq3 Length=560494 Score = 107 bits (118), Expect = 4e-18 Identities = 152/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| |||||||||||||||||||| | | | || ||||| | ||| | || Sbjct 26776 TGTCTGGTGGTTGGAAGATGAAGCTTGAATTGGCCCGTGCCATGATGTCGCGCGTTGACA 26717 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 | | || || |||||||| |||||||| | ||||| |||||||| ||||||||| Sbjct 26716 TTTTGCTCCTCGATGAGCCTACCAACCATCTCGACACAACCAACGTTGCCTGGCTACAAG 26657 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||||| | || || | | | ||| |||| ||||| ||||||||||| |||| Sbjct 26656 ACTACCTCAATTCTCAGACTCAAATCACCTCCGTCATCGTCTCGCACGACTCTGGGTTCC 26597 Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919 | ||||| || ||| | | || |||||||| || Sbjct 26596 TCGATGCAGTCTGCACAGATATTATTCACTACGA 26563 >seq43 Length=605699 Score = 84.2 bits (92), Expect = 4e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 294102 CTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCA 294161 ||| ||||||||||| | |||| |||| | |||||| || || || ||||| || Sbjct 33849 CTCGTACTTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACA 33790 Query 294162 CTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATC 294221 |||| ||| | || ||||||| | ||| |||||| ||||||||||| ||||| Sbjct 33789 TTCGTTGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATC 33730 Query 294222 ATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCG 294257 | || ||| | || || ||||||| ||| ||||| Sbjct 33729 AGGGATCCAGAGAGCATAGAACAAGTCGCGTGCGCG 33694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836220557004