Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq11 143 5e-29
seq23 111 3e-19
seq3 107 4e-18
seq43 84.2 4e-11
>seq11
Length=330268
Score = 143 bits (158), Expect = 5e-29
Identities = 376/560 (67%), Gaps = 34/560 (6%)
Strand=Plus/Minus
Query 218502 CAACATCCCCGTCCCTGACTTCATCGACAAGGAGCTCATTCTTTTCTC----GCGGTATG 218557
||| || ||| || ||||||||||| |||||||||||||||| ||||| |||| |
Sbjct 286542 CAAGATTCCCATCGCTGACTTCATCAACAAGGAGCTCATTCTCTTCTCAATGGCGG-ACA 286484
Query 218558 ATGTGGAGCGTTCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCC 218617
| | ||||| ||||||| ||| ||||||| |||||||| |||||||| ||
Sbjct 286483 ACATT---CGTTCCATTCCCAACGTCATGGATGGTTTCAAGCCAGGACAGCGTAAAATTT 286427
Query 218618 TCTTTGCCGCATTCAAGCGGAACCTGGTTCAAG----AAATTAAGGTCGCTCAGTTTTCT 218673
| ||||| |||||||| || || |||| |||| ||||| |||||| | | |
Sbjct 286426 TGTTTGCTTGCTTCAAGCGCAAGCT----CAAGGCGGAAATCAAGGTTGCTCAGCTCTGT 286371
Query 218674 GGTTATGTATCCGAAATTTCTGGCTACCATCACGGTGAGCAGAGTC---TGCAGGGTGCC 218730
|| || || ||| ||| ||||||||||||||| || || |||| | ||
Sbjct 286370 GGCTACGTTGGCGAGCACACTGCCTACCATCACGGTGA--AGTCTCCCTTGCACAG-ACC 286314
Query 218731 ATTGTAGGCATGGCACAGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAAC 218790
||||| ||| |||| || || ||||||| |||||||| || | || | |||||
Sbjct 286313 ATTGTCGGCTTGGCTCAATCCTTTGTGGGCGCAAACAACATCAATGTCTTGATGCCCAAT 286254
Query 218791 GGTCAGTTTGGTTCTCGTCTATTGGGTGGAAAGGATAGTGCTTCTGCCAGGTATATCTTT 218850
||||| || ||| | |||| |||||| || ||| ||| || | || ||||||
Sbjct 286253 GGTCAATTCGGTACACGTCACCAGGGTGGTAAAGATGCTGCCAGCGCGCGTTACATCTTT 286194
Query 218851 ACAAAGTTGTCGCCCGTGACGCGCCAGGTGTTCAATCAGGCCGATGATG----TGCTCCT 218906
||| | ||| | | | | || || | || | || ||| ||| |||||
Sbjct 286193 ACAGACTTGGCTCGCATCACAAAAAAGATCTTTTGCGAAGCAGAT-ATGCCATTGCTC-- 286137
Query 218907 TAAGTATCTTGAG-GACGATGGT-TCTTCGATTGAGCCCGAGTGGTATGTGCCTGCTATT 218964
|| || | |||| || || ||| || | | | ||||| || ||||||| ||| | |
Sbjct 286136 -AATTA-CCTGAGCGATGACGGTCTCAT-GGTAGAGCCAGAATGGTATGCGCCAGTGCTG 286080
Query 218965 CCGTTTTTGCTCGTAAATGGTGCCAATGGTATCGGGACAGGGTTCAGTACTGACATTCCT 219024
|| | |||| || || ||| || ||||| || || || | || ||||||||
Sbjct 286079 CCTATGCTGCTAGTCAACGGTACCTCGGGTATTGGTACTGGCTGGTCCACAGACATTCCA 286020
Query 219025 TCTTACAATCCCAAGGACAT 219044
|| |||||||||||||||
Sbjct 286019 AATTTCAATCCCAAGGACAT 286000
>seq23
Length=690853
Score = 111 bits (122), Expect = 3e-19
Identities = 376/572 (66%), Gaps = 19/572 (3%)
Strand=Plus/Minus
Query 251844 GTGCAGACCCTCGTCGCGACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCC 251903
||| ||||||||||| ||| ||||| ||| ||| | || || ||||| | ||
Sbjct 88929 GTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACC 88870
Query 251904 ACGGTTCCTGAGCCAGAAGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963
||| ||| ||||||| ||||| | | || || |||||||| | | |||||||||
Sbjct 88869 ACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGC 88810
Query 251964 CACCCATGCAACAAGGCGCTCAGCAAA---CGACTTGTC--CTGCGA-CAAGAACTTCTG 252017
| | || ||||| ||| ||||| |||| ||| |||| | | || | |
Sbjct 88809 AGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGCAATCCAG---CGCAG 88753
Query 252018 TGCCCATGCTGCCTTCTTTCCAACCGC-GGGGATTGTTTCGATTGCATCAAAGAGAGAGT 252076
|||||| ||| ||| || | || |||||||| ||||||||||| ||||| |
Sbjct 88752 TGCCCAGTCTG-CTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGCT 88694
Query 252077 TCCGCTCGGCATCGTCCTCGATGAGCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGA 252136
||| | || | |||| |||| | ||||| ||||| ||||| |||| || ||||
Sbjct 88693 GCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGTGGA 88634
Query 252137 TGGATTCGTTGAACATCTGGTAAGCATAGAATAGACGCGCGGAAGGGTCGGTGACTTCCG 252196
|| ||| | |||||| | ||||||| || || || | ||||||
Sbjct 88633 TGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGACTTCGT 88574
Query 252197 TGGA-AAAGTTGTTTGCAATGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCA 252255
|||| ||| |||| || || | || |||||||| ||| | |||||||| |
Sbjct 88573 TGGAGAAACGCTCGAGCAA-ATTTTCATTGACAATGCCATCACTGGCGGCAAAGAAAGCG 88515
Query 252256 AGAATGGTCTTGATGAAGTGACGCTCATCGTCGTTGAGCTTGTCACGCCAGTCGGCAATG 252315
|| | | ||||||| || || |||||||||||||||| ||||||| | |
Sbjct 88514 AGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTGCAGG 88455
Query 252316 TCCTGATTCAGAGG--AACTTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACA 252373
|||| | ||||| || || || | |||||||| | | | ||||| |||||||
Sbjct 88454 TCCT--TGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTACA 88397
Query 252374 -TTGCGAACACATCAGGGTACTTGATTGGGAA 252404
|||| || | || | |||||||| |||||
Sbjct 88396 TTTGCCAA-ATCTCGTGATACTTGATGGGGAA 88366
>seq3
Length=560494
Score = 107 bits (118), Expect = 4e-18
Identities = 152/214 (71%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765
|||| |||||||||||||||||||| | | | || ||||| | ||| | ||
Sbjct 26776 TGTCTGGTGGTTGGAAGATGAAGCTTGAATTGGCCCGTGCCATGATGTCGCGCGTTGACA 26717
Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825
| | || || |||||||| |||||||| | ||||| |||||||| |||||||||
Sbjct 26716 TTTTGCTCCTCGATGAGCCTACCAACCATCTCGACACAACCAACGTTGCCTGGCTACAAG 26657
Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885
|||||| | || || | | | ||| |||| ||||| ||||||||||| ||||
Sbjct 26656 ACTACCTCAATTCTCAGACTCAAATCACCTCCGTCATCGTCTCGCACGACTCTGGGTTCC 26597
Query 279886 TAGATGCCGTGTGCTCTGCCATCATTCACTATGA 279919
| ||||| || ||| | | || |||||||| ||
Sbjct 26596 TCGATGCAGTCTGCACAGATATTATTCACTACGA 26563
>seq43
Length=605699
Score = 84.2 bits (92), Expect = 4e-11
Identities = 112/156 (72%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 294102 CTCATACTTGGTGTAAAGCTCTTCGTATTCCTTGCCATATACATCAGACAGGCCAGGGCA 294161
||| ||||||||||| | |||| |||| | |||||| || || || ||||| ||
Sbjct 33849 CTCGTACTTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACA 33790
Query 294162 CTCGTGAGGGTCAAGTAGAGACCACTGGGCATCAGTCTCCACGCGCTTCATGAATAGATC 294221
|||| ||| | || ||||||| | ||| |||||| ||||||||||| |||||
Sbjct 33789 TTCGTTGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATC 33730
Query 294222 ATTGACCCACATTGCGTAAAACAAGTTGCGGGCGCG 294257
| || ||| | || || ||||||| ||| |||||
Sbjct 33729 AGGGATCCAGAGAGCATAGAACAAGTCGCGTGCGCG 33694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027836220557004
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |