Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq43 185 2e-41
seq40 152 9e-32
seq23 129 1e-24
seq11 109 1e-18
>seq43
Length=605699
Score = 185 bits (204), Expect = 2e-41
Identities = 182/235 (77%), Gaps = 0/235 (0%)
Strand=Plus/Plus
Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286
|||| | |||||| ||||| ||||| |||||||| | || ||||| || || ||||| |
Sbjct 450416 TTTACTGTCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGT 450475
Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346
| |||| | || | ||||| || | |||||| || || || ||||| | || ||||
Sbjct 450476 AGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGT 450535
Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406
| |||||||| |||||||||||||||||||| ||||||| || |||||||||| ||
Sbjct 450536 CAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATG 450595
Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
| ||||| || | |||||||| ||||| || || ||||||||||| || |||||
Sbjct 450596 ACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| || || | || | ||| || || ||||| || ||||| || || || |
Sbjct 450652 CCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCA 450711
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || ||||| | || ||||| ||||||
Sbjct 450712 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGA 450771
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| ||||||||||||||||| ||||||| || |||||||||| |||||| |||
Sbjct 450772 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACT 450831
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || ||||| ||||| || | ||||| ||||| ||||||||
Sbjct 450832 TCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878
Score = 145 bits (160), Expect = 1e-29
Identities = 166/223 (74%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || ||||| || | || | ||| || || ||||| || |||||||| || || |
Sbjct 451336 CCACCACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 451395
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
||||| | |||||||| | |||||| || ||||| || | | || ||||| ||||||
Sbjct 451396 AGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGA 451455
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| ||||||||||| ||||| || | |||||| || |||||||||| ||||| ||
Sbjct 451456 ATCCCTTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACC 451515
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457
|| | ||| ||||| || || || || |||||||| || ||||
Sbjct 451516 TCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCT 451558
Score = 140 bits (154), Expect = 6e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| |||||||| || | || | ||| || || ||||| || |||||||| || || |
Sbjct 450880 CCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCC 450939
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | || || || | |||||| || || || ||||| | || ||||| |||||
Sbjct 450940 AAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGG 450999
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|| |||||||||||||| ||||| |||||| || |||||||||| ||| |||||
Sbjct 451000 ATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACC 451059
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || ||||| ||||| || | ||||||||||| || |||||
Sbjct 451060 TCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106
Score = 134 bits (148), Expect = 3e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| || || || || | || | ||| || || ||||| || || || || || ||||
Sbjct 451108 CCACCACGGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCC 451167
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
| || | ||||| || | |||||| || || || ||||| | || || || ||||||
Sbjct 451168 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGA 451227
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| |||||||| |||||| || |||||||||| ||| || ||
Sbjct 451228 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACC 451287
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | |||||||| ||||| || || |||||||| || ||||||||
Sbjct 451288 TCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334
>seq40
Length=667070
Score = 152 bits (168), Expect = 9e-32
Identities = 170/227 (75%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
||||| || || || | || | ||| || || ||||| || |||||||| || || | |
Sbjct 1504 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 1445
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| || || || ||||| | || ||||| || ||
Sbjct 1444 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGG 1385
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
|||||||||||||| || || || | |||||| ||||| ||||||| || || ||
Sbjct 1384 ATGCCTTCCTTGTCCTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACC 1325
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | ||||||||| || |||||||||||||||||||| || |||||
Sbjct 1324 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
>seq23
Length=690853
Score = 129 bits (142), Expect = 1e-24
Identities = 391/593 (66%), Gaps = 26/593 (4%)
Strand=Plus/Plus
Query 172887 TCCTTGTCACCGGTGGAGCAGGCTTCATCGGCTCGCACGTCGTCATGAAACTCGTTCAGA 172946
|||| |||| |||||||| |||||||||| |||| ||||||||| | | |||||||
Sbjct 153297 TCCTCATCACGGGTGGAGCGGGCTTCATCGCCTCGTACGTCGTCAGGCATTTCGTTCACC 153356
Query 172947 GGTACCCCGAGTGCAAGGTGGTGGTGCT-CGACAAGATGGACTACTGCGCGACCCTGAAC 173005
|||||| |||| ||| | | | || ||||||| | |||||||| || | | |||
Sbjct 153357 AGTACCCAGAGTACAACATCATC-TCCTACGACAAGCTCGACTACTGTGCATCGCGCAAC 153415
Query 173006 AACCTGGCAACAGTTCGA-GATGCTCCCAATTTCAAGTTCGTCAAGGGAGATATT--CAA 173062
||| || | | ||| | ||| |||| || | | ||||| || |||
Sbjct 153416 AACACCGCTGCTCT-CGACGGCAAGGACAACTTCACCTTTGAACAAGGAGACATCACCAA 153474
Query 173063 TCTACTGATCT---CCTGGCGCACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCAC 173119
|| | || | ||| || ||||| ||| || | || | || || || ||||||
Sbjct 153475 TC--CCGAGCAGACCCTTGCT---GTCCTCAAGAAGCACAACGTCGATACCATCATGCAC 153529
Query 173120 TTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAAC 173179
| |||||| ||| | || |||||| || || |||||||| | || |||| |||
Sbjct 153530 TATGCTGCTCAGTCTCACGTGGACTTGTCCTTTGGTAACTCCTACACCTTCACCAACAAC 153589
Query 173180 AACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGG 173239
|||||| ||| || ||||| ||||| || || || | ||| |||||| |||||
Sbjct 153590 AACGTCCTCGGCACACACGTCCTCCTCGAGTGTGCCCAGA---ATGCTGGTGTCAAGCGG 153646
Query 173240 TTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGC 173299
|||||| | | || || ||||| || ||||| || ||| |||| | | |
Sbjct 153647 TTCATCCACATCTCAACAGACGAGGTGTACGGTGA----AGTTGAGGCAGATGGTGATGA 153702
Query 173300 CTCGATGAACACTCGTCCCTC---GAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGT 173356
|| | | | | || ||||| | || || ||||| || || || ||||||| | |
Sbjct 153703 CTTGCTCGAGA--CGGCCCTCTTGGCACCCACCAACCCTTACGCTGCTTCCAAGGCCGCT 153760
Query 173357 GCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416
|| || ||||| | ||| || ||| || | |||||| || ||||| | |||
Sbjct 153761 GCAGAGATGATTGTCAATGCGTACTACAAGTCCTTCAAGCTCCCCATCATCATTGTGCGT 153820
Query 173417 GGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAAATGATCCCAAAATT 173469
|||||| || ||||| || || |||| ||| || || | || ||||| ||
Sbjct 153821 TCCAACAACGTCTATGGTCCTCACCAGTACCCGGAGAAGGTCATTCCAAAGTT 153873
>seq11
Length=330268
Score = 109 bits (120), Expect = 1e-18
Identities = 432/668 (65%), Gaps = 30/668 (4%)
Strand=Plus/Plus
Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037
|| |||||||| ||||| | | |||||| ||| | || | | ||| ||||
Sbjct 14922 TAACGCCACTGAATGTAGTCACTAGGGGTCTCGTCAACATGAGCAGCCAAGTGGGTGAAA 14981
Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC------AGAGCCC 225091
||| ||| || ||||| || || |||| ||||||||| |||| || ||| ||
Sbjct 14982 GCAGCCTGAGCAACGTATGCGATACGCAAGTTGGGATGTGTCCAGACTTCACCAGACCCA 15041
Query 225092 CGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTG 225151
|| | ||| | ||||| | ||||||||||| || | ||| || || || |||
Sbjct 15042 GGAATGAGTTCT------CCGGTCAACACCTTGATGAGAGTGGACTTTCCAGCTCCGTTG 15095
Query 225152 GGGCCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTT-----GCTGA 225206
|| ||||| || |||| || || || | | ||| | | | || |||||
Sbjct 15096 GGACCAATGACAGCAATACGAGAGGAGAGCGAGCACTGGAAAGTAATGTCCTCTAGCTGA 15155
Query 225207 AGATCT-CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGG 225265
| | | ||| ||||| |||| || |||| | | | ||| ||||||||
Sbjct 15156 GGCTTTGCAGTGCCAG---GGTACTGGAATGCCATGTTGCTGACCTTGATGATGGCCTTT 15212
Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGT-CACCGC 225324
| ||||| | | ||| |||| ||| || ||||||||||| | | || | | |||
Sbjct 15213 TGCTTGGTCTTGACACCTTCCAAGAATCCAGGCTCGGGGAA-TGTGAATTCCTGCTCCGA 15271
Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384
| || |||||||| || ||| || ||| ||| || |||||| |||
Sbjct 15272 TGCGCCGAGCTCGTAGTAGGACTTGGCCGAAGGCACCTTCTTCACAAACTCAGACAAGTT 15331
Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC 225444
|| | | ||| |||||||| ||| ||||| || | ||| | || ||
Sbjct 15332 ACCTTGATACTTGCGGAGCTTGAAC--CTT-TCGTAGTGGATAAT-GTATTCAACGACGC 15387
Query 225445 G-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGA 225503
| || |||||||||||||||||||| ||||| ||||||| || ||| | |||| |||
Sbjct 15388 GGTCGAGGAAGCCAGAGTCGTGGGAGACAATCATGGACGTGACATTCTTTTGGCCAATGA 15447
Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562
|| || | |||||| || || | ||||||| |||||| || || ||||| |||
Sbjct 15448 GG-AAGTCCTCGAGCCACTTGACATTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGA 15506
Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622
|||| ||||| || | ||| ||||| || | |||| | |||||| ||||| ||
Sbjct 15507 AGCAAAATGTCTGCCTTTTGGAGCATGGCACGGGCAAGAGCTAACTTCATCTTCCATCCA 15566
Query 225623 CCGGACAG 225630
|| || ||
Sbjct 15567 CCAGAAAG 15574
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921621893107680
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