Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq43 185 2e-41 seq40 152 9e-32 seq23 129 1e-24 seq11 109 1e-18 >seq43 Length=605699 Score = 185 bits (204), Expect = 2e-41 Identities = 182/235 (77%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 |||| | |||||| ||||| ||||| |||||||| | || ||||| || || ||||| | Sbjct 450416 TTTACTGTCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGT 450475 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 | |||| | || | ||||| || | |||||| || || || ||||| | || |||| Sbjct 450476 AGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGT 450535 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | |||||||| |||||||||||||||||||| ||||||| || |||||||||| || Sbjct 450536 CAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATG 450595 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| || | |||||||| ||||| || || ||||||||||| || ||||| Sbjct 450596 ACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | || | ||| || || ||||| || ||||| || || || | Sbjct 450652 CCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCA 450711 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| |||||| Sbjct 450712 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGA 450771 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||||||||||||||| ||||||| || |||||||||| |||||| ||| Sbjct 450772 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACT 450831 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || | ||||| ||||| |||||||| Sbjct 450832 TCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 145 bits (160), Expect = 1e-29 Identities = 166/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || || ||||| || |||||||| || || | Sbjct 451336 CCACCACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCA 451395 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 ||||| | |||||||| | |||||| || ||||| || | | || ||||| |||||| Sbjct 451396 AGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGA 451455 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| ||||| || | |||||| || |||||||||| ||||| || Sbjct 451456 ATCCCTTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACC 451515 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCT 68457 || | ||| ||||| || || || || |||||||| || |||| Sbjct 451516 TCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCT 451558 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| || | || | ||| || || ||||| || |||||||| || || | Sbjct 450880 CCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCC 450939 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | || || || | |||||| || || || ||||| | || ||||| ||||| Sbjct 450940 AAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGG 450999 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || |||||||||||||| ||||| |||||| || |||||||||| ||| ||||| Sbjct 451000 ATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACC 451059 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| ||||| || | ||||||||||| || ||||| Sbjct 451060 TCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 134 bits (148), Expect = 3e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | || | ||| || || ||||| || || || || || |||| Sbjct 451108 CCACCACGGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCC 451167 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| || || || ||||| | || || || |||||| Sbjct 451168 AAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGA 451227 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| |||||||| |||||| || |||||||||| ||| || || Sbjct 451228 ATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACC 451287 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| || || |||||||| || |||||||| Sbjct 451288 TCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334 >seq40 Length=667070 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| || || || | || | ||| || || ||||| || |||||||| || || | | Sbjct 1504 CCTCCACGGAGACGGAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 1445 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || || || ||||| | || ||||| || || Sbjct 1444 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGG 1385 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| || || || | |||||| ||||| ||||||| || || || Sbjct 1384 ATGCCTTCCTTGTCCTGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACC 1325 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || |||||||||||||||||||| || ||||| Sbjct 1324 TCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278 >seq23 Length=690853 Score = 129 bits (142), Expect = 1e-24 Identities = 391/593 (66%), Gaps = 26/593 (4%) Strand=Plus/Plus Query 172887 TCCTTGTCACCGGTGGAGCAGGCTTCATCGGCTCGCACGTCGTCATGAAACTCGTTCAGA 172946 |||| |||| |||||||| |||||||||| |||| ||||||||| | | ||||||| Sbjct 153297 TCCTCATCACGGGTGGAGCGGGCTTCATCGCCTCGTACGTCGTCAGGCATTTCGTTCACC 153356 Query 172947 GGTACCCCGAGTGCAAGGTGGTGGTGCT-CGACAAGATGGACTACTGCGCGACCCTGAAC 173005 |||||| |||| ||| | | | || ||||||| | |||||||| || | | ||| Sbjct 153357 AGTACCCAGAGTACAACATCATC-TCCTACGACAAGCTCGACTACTGTGCATCGCGCAAC 153415 Query 173006 AACCTGGCAACAGTTCGA-GATGCTCCCAATTTCAAGTTCGTCAAGGGAGATATT--CAA 173062 ||| || | | ||| | ||| |||| || | | ||||| || ||| Sbjct 153416 AACACCGCTGCTCT-CGACGGCAAGGACAACTTCACCTTTGAACAAGGAGACATCACCAA 153474 Query 173063 TCTACTGATCT---CCTGGCGCACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCAC 173119 || | || | ||| || ||||| ||| || | || | || || || |||||| Sbjct 153475 TC--CCGAGCAGACCCTTGCT---GTCCTCAAGAAGCACAACGTCGATACCATCATGCAC 153529 Query 173120 TTTGCTGCGCAGACCCATGTGGACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAAC 173179 | |||||| ||| | || |||||| || || |||||||| | || |||| ||| Sbjct 153530 TATGCTGCTCAGTCTCACGTGGACTTGTCCTTTGGTAACTCCTACACCTTCACCAACAAC 153589 Query 173180 AACGTCTACGGGACCCACGTTCTCCTGGAATGCGCGAGGCTCTATGGCGGTGTCCAGCGG 173239 |||||| ||| || ||||| ||||| || || || | ||| |||||| ||||| Sbjct 153590 AACGTCCTCGGCACACACGTCCTCCTCGAGTGTGCCCAGA---ATGCTGGTGTCAAGCGG 153646 Query 173240 TTCATCAATGTGTCTACCGACGAAGTATACGGCGAGAGCAGTCTGGGCAAAAAAGAAGGC 173299 |||||| | | || || ||||| || ||||| || ||| |||| | | | Sbjct 153647 TTCATCCACATCTCAACAGACGAGGTGTACGGTGA----AGTTGAGGCAGATGGTGATGA 153702 Query 173300 CTCGATGAACACTCGTCCCTC---GAGCCAACAAACCCATATGCAGCAGCCAAGGCTGGT 173356 || | | | | || ||||| | || || ||||| || || || ||||||| | | Sbjct 153703 CTTGCTCGAGA--CGGCCCTCTTGGCACCCACCAACCCTTACGCTGCTTCCAAGGCCGCT 153760 Query 173357 GCCGAAATGATGGCACGTGCATATCACACATCGTACAAGCTACCAGTCATCGTGACGCGC 173416 || || ||||| | ||| || ||| || | |||||| || ||||| | ||| Sbjct 153761 GCAGAGATGATTGTCAATGCGTACTACAAGTCCTTCAAGCTCCCCATCATCATTGTGCGT 153820 Query 173417 GGCAACAATGTGTATGGCCCGCATCAGTTCCCCGAAAAAATGATCCCAAAATT 173469 |||||| || ||||| || || |||| ||| || || | || ||||| || Sbjct 153821 TCCAACAACGTCTATGGTCCTCACCAGTACCCGGAGAAGGTCATTCCAAAGTT 153873 >seq11 Length=330268 Score = 109 bits (120), Expect = 1e-18 Identities = 432/668 (65%), Gaps = 30/668 (4%) Strand=Plus/Plus Query 224978 TACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGGAAA 225037 || |||||||| ||||| | | |||||| ||| | || | | ||| |||| Sbjct 14922 TAACGCCACTGAATGTAGTCACTAGGGGTCTCGTCAACATGAGCAGCCAAGTGGGTGAAA 14981 Query 225038 GCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACAC------AGAGCCC 225091 ||| ||| || ||||| || || |||| ||||||||| |||| || ||| || Sbjct 14982 GCAGCCTGAGCAACGTATGCGATACGCAAGTTGGGATGTGTCCAGACTTCACCAGACCCA 15041 Query 225092 CGAGTCGGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTG 225151 || | ||| | ||||| | ||||||||||| || | ||| || || || ||| Sbjct 15042 GGAATGAGTTCT------CCGGTCAACACCTTGATGAGAGTGGACTTTCCAGCTCCGTTG 15095 Query 225152 GGGCCAATCACGCCAATCCGGGATGACATTGCAACCTGCGAGTTCACGTT-----GCTGA 225206 || ||||| || |||| || || || | | ||| | | | || ||||| Sbjct 15096 GGACCAATGACAGCAATACGAGAGGAGAGCGAGCACTGGAAAGTAATGTCCTCTAGCTGA 15155 Query 225207 AGATCT-CAGGGCCAGTTTGGTAAGCAAAGGCCACGCCACGCAGCTTCATGATGGCACGG 225265 | | | ||| ||||| |||| || |||| | | | ||| |||||||| Sbjct 15156 GGCTTTGCAGTGCCAG---GGTACTGGAATGCCATGTTGCTGACCTTGATGATGGCCTTT 15212 Query 225266 TCCTTGGAAGTAATACCCTCCAGGAACCCGGGCTCGGGGAACTCCCACTTGGT-CACCGC 225324 | ||||| | | ||| |||| ||| || ||||||||||| | | || | | ||| Sbjct 15213 TGCTTGGTCTTGACACCTTCCAAGAATCCAGGCTCGGGGAA-TGTGAATTCCTGCTCCGA 15271 Query 225325 GTCCTTCAGGTCGTAGTAAGATGCAGCCTCGGGTCGCTTTGCCACGAAAGCAGACAGGTT 225384 | || |||||||| || ||| || ||| ||| || |||||| ||| Sbjct 15272 TGCGCCGAGCTCGTAGTAGGACTTGGCCGAAGGCACCTTCTTCACAAACTCAGACAAGTT 15331 Query 225385 TCCGAGGTGCTTCGTGAGCTTGAGGTTCTTCTCGTAATGAACAATTGCCGAGCACACTGC 225444 || | | ||| |||||||| ||| ||||| || | ||| | || || Sbjct 15332 ACCTTGATACTTGCGGAGCTTGAAC--CTT-TCGTAGTGGATAAT-GTATTCAACGACGC 15387 Query 225445 G-TCAAGGAAGCCAGAGTCGTGGGACACAATGATGGACGACACGTTCGTCAGGCCCTTGA 225503 | || |||||||||||||||||||| ||||| ||||||| || ||| | |||| ||| Sbjct 15388 GGTCGAGGAAGCCAGAGTCGTGGGAGACAATCATGGACGTGACATTCTTTTGGCCAATGA 15447 Query 225504 GGTGCGTGAT-GAGCCATGCCACGTTGCTGACGTCCATGTGGTTTGTAGGTTCGTCCAGA 225562 || || | |||||| || || | ||||||| |||||| || || ||||| ||| Sbjct 15448 GG-AAGTCCTCGAGCCACTTGACATTCTTCACGTCCAAGTGGTTGGTGGGCTCGTCGAGA 15506 Query 225563 AGCAGGATGTCAGCATCAATGAGGATGGCGCGCGTGAGAGACAGCTTCATTTTCCAGCCC 225622 |||| ||||| || | ||| ||||| || | |||| | |||||| ||||| || Sbjct 15507 AGCAAAATGTCTGCCTTTTGGAGCATGGCACGGGCAAGAGCTAACTTCATCTTCCATCCA 15566 Query 225623 CCGGACAG 225630 || || || Sbjct 15567 CCAGAAAG 15574 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921621893107680