Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq43 316 4e-81 seq23 255 1e-62 >seq43 Length=605699 Score = 316 bits (350), Expect = 4e-81 Identities = 898/1362 (66%), Gaps = 41/1362 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 |||||||||||| ||||| || | || || || ||| ||| | |||||| || || Sbjct 34647 GTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGG 34588 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || || || ||||| ||||| | |||| |||||| ||||| || | ||| Sbjct 34587 CTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTG-CAC 34529 Query 244210 -CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGC-TCGTTCCAGTCC 244267 || ||| ||| | | || ||| | || | | ||||| ||| ||||||| Sbjct 34528 ACAACAGGGAGTTGCGGATACCATGCTTTGCAATCTGCTCTTTGAGCGTCGC-CCAGTCC 34470 Query 244268 CACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTG 244327 || | | ||| | || ||| ||||| |||| |||||| || |||| Sbjct 34469 CAGA-----GCTTGGT----GGGTGTGACATTCCACAAGTCATACTGCAAAAGTCCCTGA 34419 Query 244328 CTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTC 244387 | | || |||||||||||| | ||| ||||| || || ||||||| ||| Sbjct 34418 GAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAG 34359 Query 244388 TCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTG 244447 | || || || ||| |||||||||||| ||||| |||||| || ||||| | Sbjct 34358 GCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCG 34299 Query 244448 CCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATG 244507 || ||| || | | || |||| | ||||| || || ||||| || | Sbjct 34298 GGCGAGTCGAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGA 34239 Query 244508 CCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCG 244567 |||||||||| ||| ||||||||||| ||| ||||| || ||||| ||||| || Sbjct 34238 CCGATGGGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATGACTGGGTAGTAGTTGACG 34179 Query 244568 TCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAG 244627 ||||| | |||||| | |||||| | | | | |||| ||| ||| || ||| Sbjct 34178 TCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAG 34119 Query 244628 TCGTACTCGTAGGGATCCTCGGCG-ATGGTGATCCTCACAAACTCGTTGAGGGCGACGCT 244686 ||||| || | | | || ||| ||| ||| || | | ||| | | Sbjct 34118 TCGTAGACGG-GTGTTTCTGCGCGCATGTCGATG------AAGGTGGGCAAGGCAATGGA 34066 Query 244687 GGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAG 244746 ||| || |||||||| |||||||| || | | ||||| |||||||||||| || | Sbjct 34065 GGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAA 34006 Query 244747 GTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTT 244806 ||| |||||||||||||| || |||| || || || |||||| ||||||||||||||| Sbjct 34005 GTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTT 33946 Query 244807 GTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCAGAGGTC 244866 ||| ||||||||||| || ||||| || || |||| | || ||| || | Sbjct 33945 GTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTT 33886 Query 244867 CCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGCCTC 244926 | ||||||| ||| | ||||||| | |||||| |||||||| ||| || Sbjct 33885 CTGTGCCTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTC 33826 Query 244927 GAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCA--CGACGCCGGGCACATGAGACTC 244984 || || ||| | ||||||| | || || || || | ||||||||||| | Sbjct 33825 AAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTG--GGGCACATGAGCGAC 33768 Query 244985 CACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCTGGAAG 245044 |||||||| |||| || | || ||||||||| || ||||||||||| || | ||| Sbjct 33767 CACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAAC 33708 Query 245045 AGGTCCCTGGTCCTCTG--CTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGTCAA 245102 | ||| | || | | | ||| ||| ||| |||||| | || || | ||| ||| Sbjct 33707 AAGTCGC--GTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAA 33650 Query 245103 AGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGCCTC 245162 ||| ||| ||||||| ||||| ||||| | ||| | ||| || || ||||||||||| | Sbjct 33649 AGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCAC 33590 Query 245163 CCTGGTCCACCATCCTCTCGAGCG-CGTTGAAGATGCGCAGGGTAGGCACTATGCCGTTA 245221 | ||||| || ||| | || | |||||||| ||||| | || | |||||||| Sbjct 33589 CTTGGTCGACATACCTGGC-AGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTG 33531 Query 245222 GAGTGGCCGTTGGTGCCCTTGATGTAGGCGCC-CTTGCCCCTGAGGTTGCTGATGGACAT 245280 || || || || || ||||| ||| |||| | || ||| | ||||||| Sbjct 33530 GATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCAC----GGATGCAG-TGGACAT 33476 Query 245281 ----GCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 || | || ||||| ||| ||||| | ||| || | |||| ||||| | Sbjct 33475 TGAGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGA 33416 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 |||| || || ||| |||||| ||| || ||||| || || || || || |||| Sbjct 33415 TGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGG 33356 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGT 245438 | | | | |||||| || || || ||||| || |||| Sbjct 33355 GCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGT 33314 >seq23 Length=690853 Score = 255 bits (282), Expect = 1e-62 Identities = 594/878 (68%), Gaps = 36/878 (4%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || | || || || ||| |||||||| ||||| | ||| |||||||||| Sbjct 88372 ATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGGACCGCC 88431 Query 42345 GAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGT-CACTGTCTGAGA--ACGAA 42401 |||||||||||||| |||||||| | || ||||||| || || || ||||| Sbjct 88432 GAGGAGATTGACCTCTCCAAGGACCTGCACGACTGGGAGAACAAGCTCAACGACGACGAA 88491 Query 42402 AAGTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAG 42461 || ||| || || | || || ||||| |||||| ||| ||||| |||||||| Sbjct 88492 CGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTGTCAATGAA 88551 Query 42462 AACCTGGCCACCAGGTTCATGAAAGAGGTGCA-GTACTTTGAGGCGCGCTGCTTCTACGG 42520 || || | | ||| || || || || |||| ||||| || |||||||| || Sbjct 88552 AATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCA-GAGGCACGATGCTTCTATGG 88610 Query 42521 CTTCCAGATAGCCATAGAG---AACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---A 42574 ||||||||| ||| | | ||| | ||||| ||| ||| || || |||| | Sbjct 88611 CTTCCAGAT---CATGGCGGAAAACATCCACTCAGAGACCTACTCC---CTCCTCATTGA 88664 Query 42575 CACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCC 42634 || |||||| ||| | | | || | || ||| | || || ||||| || || Sbjct 88665 TACATACATCAAGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGACAATCCC 88724 Query 42635 CTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCG-AGAGTCCCGACG---CAA 42690 ||||||||| | || || |||||||| || |||||| | ||| ||||| | | Sbjct 88725 GTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGA----CGACGAGTCTA 88780 Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 | || | | | || || || ||| | || |||||||| ||||| ||||| ||| | | Sbjct 88781 CCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGCTCGT 88840 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAAC 42809 ||||||||||||| ||||||||| || ||| || ||||| ||||||||||| || Sbjct 88841 TCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTC-ATGCCGGGACTCACCTTTAGCAAT 88899 Query 42810 GAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGC 42869 || |||||| | |||||||| || || | || || ||||| ||| |||| || Sbjct 88900 GAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTT---TAGT 88956 Query 42870 CACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAG 42929 ||| | | | ||||||| || ||| | | ||| | | |||||| || || || || ||| Sbjct 88957 CACTTGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCATTACTGAAGCTGTTGAG 89016 Query 42930 ATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCC-TGGTCGGCATGAACCACGA 42988 || ||| ||| |||||||| | || || || || ||| | | || || || | Sbjct 89017 ATTGAGCAGGCTTTCCTCACAGACTCCCT-ACCATGCCCCTTATTGGGTATCAATGCAAA 89075 Query 42989 CCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAG 43048 |||||| || ||||||| | | ||||| || | ||||| | | || || Sbjct 89076 GCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTTGGCAACAA 89135 Query 43049 CCGCCTCTACAACAC--GCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 |||| |||| || | || || ||||||||||||||||| || | | ||| Sbjct 89136 AAAGTTCTATCACACCAGCAAT--CCATTTGACTTTATGGAGAACATTTCACTCGCTGGC 89193 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCA 43144 ||||||||||| || |||||||| |||| |||||||| Sbjct 89194 AAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCA 89231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338680613440