Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq23 104 5e-17 seq43 87.8 4e-12 >seq23 Length=690853 Score = 104 bits (114), Expect = 5e-17 Identities = 562/879 (64%), Gaps = 27/879 (3%) Strand=Plus/Plus Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934 ||||||||| |||||| || || ||| | ||||| || ||||||| ||| |||| ||| Sbjct 88366 TTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGG 88425 Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992 ||| ||||||| || ||||| | | ||| | ||||||| | || ||||| | Sbjct 88426 ACCGCCGAGGAGATTGACCTCTCCAAG--GACCTGCACGACTGGGAGAACAAGCTCAACG 88483 Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052 |||||||||| |||||| ||| | || | ||| || || | | ||||| |||| Sbjct 88484 ACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTG 88543 Query 243053 TGATGGAAAATCTGCAGACCAACTTTAGT--GTGGAAGTAACGGTTCCAGAGGCACGGCA 243110 | | |||||| ||| | | | || | ||||| || ||||||||||| Sbjct 88544 TCAATGAAAATTTGC--TCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGCACGATG 88601 Query 243111 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTAT 243170 || |||| | ||| | | ||| ||||| || || || | || || || Sbjct 88602 CTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCTCAT 88661 Query 243171 CGACGCGCTTATTTCAGATGAACAAG---AGCGAAACGAGCTTTTCGACGCCATCGAAAA 243227 || | || ||| | ||||||| | || | | || ||||| || |||| | | Sbjct 88662 TGA--TACATACATCA-AGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCG-AGA 88717 Query 243228 CATTCCGGCGGTTC-ATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286 || ||| | | || | | || ||| | ||||| | | ||| | | | || | | Sbjct 88718 CAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGACGACGAGT 88777 Query 243287 ---CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGG 243342 | ||||| |||||| || || | | ||| || || || || | || || || Sbjct 88778 CTACCTTTGCACTGCGTCTTGTGGCTTTTG-CTGCTGTCGAGGGAATCTTTTTCTCTGGC 88836 Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402 ||| | ||||||||||||| ||| ||| | ||||| || ||| | Sbjct 88837 TCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGC 88896 Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTG-AGCTTATGTATT 243460 || ||| ||||| ||| |||||||| || ||| | | |||| || ||| | || | Sbjct 88897 AATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTTTAGT 88956 Query 243461 CAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTG 243520 | | | ||||||||| || || ||| || | ||||| || ||||| |||| Sbjct 88957 C--ACTTGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCATTACTGAAGCTGTTG 89014 Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATT-GGCATGAACTCT 243579 | | || ||| ||| | ||| | | ||||||| |||||| || || || | Sbjct 89015 AGATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCC-CCTTATTGGGTATCAATGCA 89073 Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639 | |||||| | ||||||| ||||| || || || || | || || | ||||| | Sbjct 89074 AAGCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTTGGCAAC 89133 Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699 | || | || || ||| || || |||| |||||||||| |||||| || || Sbjct 89134 AAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCACTCGCTGGC 89193 Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738 || || |||||||| || ||||||||| |||| || ||| Sbjct 89194 AAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAA 89232 >seq43 Length=605699 Score = 87.8 bits (96), Expect = 4e-12 Identities = 194/290 (67%), Gaps = 1/290 (0%) Strand=Plus/Plus Query 318737 AGATCCATCGACGTCATGTCATATCCGATCAAAGAAGCGGAAACATCTAATAAACTGCGA 318796 ||||| |||||||||| | || || ||| ||||| || || || || | | Sbjct 34169 AGATC-ATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGTTCCAACAAGCGTCAC 34227 Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856 || ||||||||| |||| || ||||| || |||| ||||| ||| ||||| ||| Sbjct 34228 CGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGCCA 34287 Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916 |||||||| | || |||| ||| || ||| | ||||||| || |||||| ||| Sbjct 34288 TTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGGT 34347 Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976 ||| | ||||| ||| || || || | | ||||| || | || | ||| || Sbjct 34348 GCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGGC 34407 Query 318977 TCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGTCACTCC 319026 || || || | || | ||||||| |||||||| ||||||| || Sbjct 34408 TCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGTGGAATGTCACACC 34457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102879378251400