Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq23 104 5e-17
seq43 87.8 4e-12
>seq23
Length=690853
Score = 104 bits (114), Expect = 5e-17
Identities = 562/879 (64%), Gaps = 27/879 (3%)
Strand=Plus/Plus
Query 242875 TTCCCCATCCAGTATCCGGATATGTGGGATATGTATAAGAAGGCAGTGGCAACCTTTTGG 242934
||||||||| |||||| || || ||| | ||||| || ||||||| ||| |||| |||
Sbjct 88366 TTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGG 88425
Query 242935 ACCACCGAGGAAGTT--CCTCTGAACGCAGACGTCGTCGACTGGCGCGAGAAACTCAATG 242992
||| ||||||| || ||||| | | ||| | ||||||| | || ||||| |
Sbjct 88426 ACCGCCGAGGAGATTGACCTCTCCAAG--GACCTGCACGACTGGGAGAACAAGCTCAACG 88483
Query 242993 ACGACGAACGTCATTTCATCAAACACATTCTAGGTTTTTTCGCAGGCTCCGATGGTATTG 243052
|||||||||| |||||| ||| | || | ||| || || | | ||||| ||||
Sbjct 88484 ACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTG 88543
Query 243053 TGATGGAAAATCTGCAGACCAACTTTAGT--GTGGAAGTAACGGTTCCAGAGGCACGGCA 243110
| | |||||| ||| | | | || | ||||| || |||||||||||
Sbjct 88544 TCAATGAAAATTTGC--TCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGCACGATG 88601
Query 243111 ATTTTATGCTTACCAAACATTCAACGAATCTATCCATTCTGAACAATATGCTCTTCTTAT 243170
|| |||| | ||| | | ||| ||||| || || || | || || ||
Sbjct 88602 CTTCTATGGCTTCCAGATCATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCTCAT 88661
Query 243171 CGACGCGCTTATTTCAGATGAACAAG---AGCGAAACGAGCTTTTCGACGCCATCGAAAA 243227
|| | || ||| | ||||||| | || | | || ||||| || |||| | |
Sbjct 88662 TGA--TACATACATCA-AGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCG-AGA 88717
Query 243228 CATTCCGGCGGTTC-ATAACAAGGCAAAATGGGCTCAGAAGTGGCTAGAACCCGGTAAAT 243286
|| ||| | | || | | || ||| | ||||| | | ||| | | | || | |
Sbjct 88718 CAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGACGACGAGT 88777
Query 243287 ---CATTTGCTGAGCGTCTCGTCGCCTGGGTGTGC-GTTGAAGGTATTCTGTTTTCCGGG 243342
| ||||| |||||| || || | | ||| || || || || | || || ||
Sbjct 88778 CTACCTTTGCACTGCGTCTTGTGGCTTTTG-CTGCTGTCGAGGGAATCTTTTTCTCTGGC 88836
Query 243343 AGTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCT 243402
||| | ||||||||||||| ||| ||| | ||||| || ||| |
Sbjct 88837 TCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGC 88896
Query 243403 AACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTG-AGCTTATGTATT 243460
|| ||| ||||| ||| |||||||| || ||| | | |||| || ||| | || |
Sbjct 88897 AATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCCTGTCTCTTGTTTAGT 88956
Query 243461 CAAAGCTCCAGAACAAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTG 243520
| | | ||||||||| || || ||| || | ||||| || ||||| ||||
Sbjct 88957 C--ACTTGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCATTACTGAAGCTGTTG 89014
Query 243521 AAAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATT-GGCATGAACTCT 243579
| | || ||| ||| | ||| | | ||||||| |||||| || || || |
Sbjct 89015 AGATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCC-CCTTATTGGGTATCAATGCA 89073
Query 243580 GAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTAT 243639
| |||||| | ||||||| ||||| || || || || | || || | ||||| |
Sbjct 89074 AAGCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTTGGCAAC 89133
Query 243640 GAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGG 243699
| || | || || ||| || || |||| |||||||||| |||||| || ||
Sbjct 89134 AAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCACTCGCTGGC 89193
Query 243700 AAAACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCAA 243738
|| || |||||||| || ||||||||| |||| || |||
Sbjct 89194 AAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTACCAA 89232
>seq43
Length=605699
Score = 87.8 bits (96), Expect = 4e-12
Identities = 194/290 (67%), Gaps = 1/290 (0%)
Strand=Plus/Plus
Query 318737 AGATCCATCGACGTCATGTCATATCCGATCAAAGAAGCGGAAACATCTAATAAACTGCGA 318796
||||| |||||||||| | || || ||| ||||| || || || || | |
Sbjct 34169 AGATC-ATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGTTCCAACAAGCGTCAC 34227
Query 318797 CGCCCCATCGGTGTTGGAGTTCAAGGACTTCAGGATGTATTCTTCAAACTGAAGCTCCCA 318856
|| ||||||||| |||| || ||||| || |||| ||||| ||| ||||| |||
Sbjct 34228 CGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGCCA 34287
Query 318857 TTCGACTCATCGGAAGCCAGGGATCTCAACCGCGAAATCTTCGAACATATCTACTACGCC 318916
|||||||| | || |||| ||| || ||| | ||||||| || |||||| |||
Sbjct 34288 TTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGGT 34347
Query 318917 GCTGTAGAAGCATCGATAGAACTCGCTGAGATCCACGGTCCTTATCCAACATTCGAAGGG 318976
||| | ||||| ||| || || || | | ||||| || | || | ||| ||
Sbjct 34348 GCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGGC 34407
Query 318977 TCTCCCGCGAGCAAAGGCATCCTGCAGTACCACTTGTGGGATGTCACTCC 319026
|| || || | || | ||||||| |||||||| ||||||| ||
Sbjct 34408 TCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGTGGAATGTCACACC 34457
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102879378251400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |