Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq43 313 3e-80
seq23 145 9e-30
seq11 136 5e-27
seq2 84.2 3e-11
>seq43
Length=605699
Score = 313 bits (346), Expect = 3e-80
Identities = 1150/1776 (65%), Gaps = 55/1776 (3%)
Strand=Plus/Minus
Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656
|| ||||||||||| ||||||||||| |||| |||||| |||| | |||||||| |
Sbjct 34952 CGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTA 34893
Query 113657 AACTTGGAGAGTGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 113714
| || || ||| || ||| ||| | ||| | ||| || ||||| || |
Sbjct 34892 ATTTTACCGAATGTCGGCGCCTTGAGATGCAA--GTTGAGGGATTGCGACTGATCAATAA 34835
Query 113715 AGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 113774
|| ||||| || || |||||||| ||||| | || || ||||| |||||
Sbjct 34834 AGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATACAGTCT 34775
Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834
|||||||| || | || | ||||| | ||| ||||| | |||||||| |
Sbjct 34774 TGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGG 34715
Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894
| ||| ||| |||||||| || ||||||||| || |||| |||||||| ||
Sbjct 34714 CAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTT---GA 34658
Query 113895 GATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951
| | | || || || |||||||| || ||| || | | || || |||
Sbjct 34657 GCAACCAAGGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGC 34598
Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011
||||||| ||||||||||| |||||| ||||| || || | ||||| || |||||||
Sbjct 34597 TCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCA 34538
Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGGGC 114069
| ||||| | ||| ||| |||| ||| | ||| | ||| | || ||||| |
Sbjct 34537 TCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGC--AATCTGCTCTTTGAGCGT 34480
Query 114070 GTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACC 114126
||||||| || ||||| || | | ||||| ||| |||| | | ||
Sbjct 34479 CGCCCAGTCCCAG---AGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCC 34423
Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186
|| ||||| || || ||||| | || |||||| ||||| | | |||| || |
Sbjct 34422 CTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACA 34363
Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 114246
|| || || || |||| || || |||||||| || | |||| |||||||
Sbjct 34362 CGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGC 34303
Query 114247 CTCGTCGGAATCAAACGCGAG--TCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304
|||| || || || | || | | | || || |||| ||||||||||| |||
Sbjct 34302 CTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAG--AAGGCATCGGCGAGACCTTGCACA 34245
Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCACGGGATAAAA 114363
|| || || || || || || | | | || || | || ||| || || || |
Sbjct 34244 CCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTC-AGCTTCAATGACTGGGTAGTA 34186
Query 114364 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 114423
|| ||||| | | | || | || | |||||||| | || || || |||||
Sbjct 34185 GTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTT 34126
Query 114424 TTCGTAATCAAAACTGCGAGTCTCTTCAT---TGAC-AT--ACTTAGGAAGGGCGATTGA 114477
| | | || | | | || ||| | || | || | | || | ||| || ||
Sbjct 34125 CTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGA 34066
Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537
|| ||||| || |||| |||||| | | |||||| | ||| || ||||||||
Sbjct 34065 GGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAA 34006
Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597
|| | ||| ||||| || | |||||| || || ||||| ||| || || |||||
Sbjct 34005 GTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTT 33946
Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 114656
||| |||||| | || | |||||||| ||||| | || ||||||||| | ||| | | |
Sbjct 33945 GTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTT 33886
Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716
| | | || | | || || | || ||| ||||||||| ||||| | |||||
Sbjct 33885 CTGTGCCTTG-ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTT 33827
Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776
|||| || || || |||| | || || | | ||||| | ||| ||||
Sbjct 33826 CAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACC 33767
Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836
| | ||| |||||| ||||||||||||||||| || |||||||||||||| |||| |
Sbjct 33766 ACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACA 33707
Query 114837 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 114896
|| || ||| | ||||| | || || || ||||| || | ||| | | ||
Sbjct 33706 AGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGA 33647
Query 114897 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAG 114950
| || |||||||| || || | ||| | || | | | ||| |||| |||
Sbjct 33646 TGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGG-CACCTG--GACGCTTGTTGCCAC 33590
Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010
| |||| |||||||| || ||| || || || || ||||| || ||||| || | |
Sbjct 33589 CTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530
Query 115011 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCATGGATGTGCAT 115068
|| |||||||| || ||| | ||| || || | || |||| | |
Sbjct 33529 ATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTTGCACGGATGCAGTGGACATTGAG 33472
Query 115069 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 115128
|||||| || || || ||| ||||| || ||| |||| || ||||||| ||
Sbjct 33471 ACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCC 33412
Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188
|||||||||||| |||| ||| || ||||||||| ||| | |||||| | || ||
Sbjct 33411 ATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGT 33352
Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTTATCG 115246
||| |||||||||||||| || | ||||| ||| | ||||| ||||| | |
Sbjct 33351 ACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAGGTTG 33294
Query 115247 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 115306
|| ||||| | | | |||||| || || ||||| || | | ||| ||||| | |
Sbjct 33293 TATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATC 33234
Query 115307 ATGTATTGGGGTGTTTC--CATCAGGATACCATCGA 115340
|||| || ||| | || || ||| ||||||||
Sbjct 33233 ATGTGCTGCGGTCTCTCTGCAACAG--CACCATCGA 33200
>seq23
Length=690853
Score = 145 bits (160), Expect = 9e-30
Identities = 565/875 (65%), Gaps = 25/875 (3%)
Strand=Plus/Minus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
|||||| || || |||||||| |||||||| ||||| || | | || ||||||||
Sbjct 89229 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCAT 89170
Query 125818 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875
||| |||||||| || | | || | || || ||| || || ||||||
Sbjct 89169 AAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCC--AAGAGAGACGAGGAGT 89112
Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935
||||| | ||| | ||||||||||| ||| || | || ||||| | | |
Sbjct 89111 CGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGG 89052
Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995
||||| || | ||| || ||| ||| |||||| || || ||||| | |||| |
Sbjct 89051 CATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCT 88992
Query 125996 TGAA--TGGTGTCCACCCCAGGTCTATTGCGCAAA-GTCTTGAAGAGTTCCACGGCAAAC 126052
|| | || || | ||| | || ||| | || | || || ||| ||
Sbjct 88991 TGTACCTGTTG--CTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAA 88935
Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112
||| |||||||||||||||||| |||||||| ||||| ||| ||||| ||||||
Sbjct 88934 TCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATG 88875
Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172
||||| |||||||| | ||| || || | || || || ||||| |||||||||||
Sbjct 88874 AGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCG 88815
Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AG-CGCGACTTTGTGTCAAACCACT 126230
||| || || || | |||||| ||||||| || | || | | || ||| |||
Sbjct 88814 ACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTC-GTCTG-CAATCCAGC 88757
Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290
|| ||||| | || |||| || ||| ||||||| |||| ||| || || ||||| |
Sbjct 88756 GCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGT 88697
Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 126350
|| | || | | | || |||||||| |||| ||||| || || || || ||
Sbjct 88696 GCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGT 88637
Query 126351 GGACCATTT----CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 126406
||| ||| ||| || ||| | | ||||| | || || || || ||
Sbjct 88636 GGATGTTTTCCGCCATGAT----CTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGG 88581
Query 126407 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466
|| || | || ||| | | ||| ||| ||||| ||||| | |||||
Sbjct 88580 ACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAG 88521
Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCCAGTCG 126523
|| || |||| | ||||| |||| | ||||| || | ||| |||||||
Sbjct 88520 AAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCG 88461
Query 126524 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTA 126583
| || ||||| ||||| || | |||||| || ||||| | || ||||| ||
Sbjct 88460 TGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTG 88401
Query 126584 TAGAGTTCCCAAAGGTGGGGATACTTCAGGGGGAA 126618
|| | || ||||| | | ||||||| | ||||||
Sbjct 88400 TACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366
>seq11
Length=330268
Score = 136 bits (150), Expect = 5e-27
Identities = 211/296 (71%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 172609 ATTCAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAG 172668
||| | |||||| || || ||||| || || |||| ||| ||| ||||||||||| ||
Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976
Query 172669 CCGACCATAGCG-AAG-CTCGGAAACATCTTGATACTCCTTACCCTGTTGAAGACCCAAG 172726
|||| || || ||| || || | || || |||| || || || || | ||| |
Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034
Query 172727 ATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGG 172786
||| |||||| || | || || || | ||| ||| || ||| ||||| ||
Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094
Query 172787 ACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAA 172846
||||| |||| ||||| | ||||||||||| ||||||| || ||||| |||||
Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154
Query 172847 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 172902
| ||||||| ||||| ||||| |||||||| || ||||||| |||||| |||||
Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210
Score = 104 bits (114), Expect = 3e-17
Identities = 172/241 (71%), Gaps = 12/241 (5%)
Strand=Plus/Plus
Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGT-TCAAGGAGATTGAT 171963
|||||||| |||||| | |||| || || ||||||||| || ||||| | ||||||
Sbjct 286216 GCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAG-ACATTGAT 286274
Query 171964 ATTGTTTGAACCCATGTAGTCATTG-GCCAACTTGACAATCGTATCCGCGAGGGAGACTT 172022
||||||| |||| || |||| ||||| |||||| || | || ||||||||||
Sbjct 286275 GTTGTTTGCGCCCACAAAGG-ATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTT 286333
Query 172023 CACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCC----AACTGTGCCACCTTC 172078
|||||||||||||||| | ||| | || || ||| ||| | ||| || |||||
Sbjct 286334 CACCGTGATGGTAGGCAG---TGTGCTCGCCA-ACGTAGCCACAGAGCTGAGCAACCTTG 286389
Query 172079 ATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTG 172138
|| || ||||||| || | |||||| ||| ||| | || | |||| ||||||
Sbjct 286390 ATTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTG 286449
Query 172139 A 172139
|
Sbjct 286450 A 286450
>seq2
Length=565986
Score = 84.2 bits (92), Expect = 3e-11
Identities = 218/330 (66%), Gaps = 17/330 (5%)
Strand=Plus/Minus
Query 10872 TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 10931
|||| || ||||||||||| | || || |||| ||| ||| |||||||| || |
Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613
Query 10932 CGGGCATA----CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 10987
| | || | ||||| || || ||| || | |||||||||||||||| ||
Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553
Query 10988 ACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCG 11047
||||| |||||| ||| | || ||| |||| | || || |||| | |||
Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493
Query 11048 ACACCCACAAACATTTCCACAAAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACG 11101
||||| |||||||||||||| || | | ||| || || || ||| || |||
Sbjct 335492 ACACCGACAAACATTTCCACGAACT------CTGAACCACTGACGCTGAAGAAAGGTACG 335439
Query 11102 TTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCG 11161
| |||||| || | ||| || || || ||||| || || || || || |
Sbjct 335438 CCTGCTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAA 335379
Query 11162 AGAAGGGCACCACGTGGGATCCTGGCACCA 11191
|||| |||||| || |||||| |||| |||
Sbjct 335378 AGAATGGCACCTCGAGGGATCTTGGCGCCA 335349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597353271455520
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