Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq43 313 3e-80 seq23 145 9e-30 seq11 136 5e-27 seq2 84.2 3e-11 >seq43 Length=605699 Score = 313 bits (346), Expect = 3e-80 Identities = 1150/1776 (65%), Gaps = 55/1776 (3%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| ||||||||||| |||| |||||| |||| | |||||||| | Sbjct 34952 CGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTA 34893 Query 113657 AACTTGGAGAGTGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 113714 | || || ||| || ||| ||| | ||| | ||| || ||||| || | Sbjct 34892 ATTTTACCGAATGTCGGCGCCTTGAGATGCAA--GTTGAGGGATTGCGACTGATCAATAA 34835 Query 113715 AGCGTCCACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 113774 || ||||| || || |||||||| ||||| | || || ||||| ||||| Sbjct 34834 AGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATACAGTCT 34775 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 |||||||| || | || | ||||| | ||| ||||| | |||||||| | Sbjct 34774 TGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGG 34715 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 | ||| ||| |||||||| || ||||||||| || |||| |||||||| || Sbjct 34714 CAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTT---GA 34658 Query 113895 GATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 113951 | | | || || || |||||||| || ||| || | | || || ||| Sbjct 34657 GCAACCAAGGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGC 34598 Query 113952 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCA 114011 ||||||| ||||||||||| |||||| ||||| || || | ||||| || ||||||| Sbjct 34597 TCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCA 34538 Query 114012 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGGGC 114069 | ||||| | ||| ||| |||| ||| | ||| | ||| | || ||||| | Sbjct 34537 TCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGC--AATCTGCTCTTTGAGCGT 34480 Query 114070 GTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACC 114126 ||||||| || ||||| || | | ||||| ||| |||| | | || Sbjct 34479 CGCCCAGTCCCAG---AGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCC 34423 Query 114127 TTGGGAGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGA 114186 || ||||| || || ||||| | || |||||| ||||| | | |||| || | Sbjct 34422 CTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACA 34363 Query 114187 GCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGC 114246 || || || || |||| || || |||||||| || | |||| ||||||| Sbjct 34362 CGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGC 34303 Query 114247 CTCGTCGGAATCAAACGCGAG--TCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 114304 |||| || || || | || | | | || || |||| ||||||||||| ||| Sbjct 34302 CTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAG--AAGGCATCGGCGAGACCTTGCACA 34245 Query 114305 CCGAGGCCAATTGGGCGATGTCTCATATTAGA-CTTTCGAGCGGTCTCCACGGGATAAAA 114363 || || || || || || || | | | || || | || ||| || || || | Sbjct 34244 CCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTC-AGCTTCAATGACTGGGTAGTA 34186 Query 114364 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 114423 || ||||| | | | || | || | |||||||| | || || || ||||| Sbjct 34185 GTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTT 34126 Query 114424 TTCGTAATCAAAACTGCGAGTCTCTTCAT---TGAC-AT--ACTTAGGAAGGGCGATTGA 114477 | | | || | | | || ||| | || | || | | || | ||| || || Sbjct 34125 CTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGA 34066 Query 114478 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 114537 || ||||| || |||| |||||| | | |||||| | ||| || |||||||| Sbjct 34065 GGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAA 34006 Query 114538 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 114597 || | ||| ||||| || | |||||| || || ||||| ||| || || ||||| Sbjct 34005 GTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTT 33946 Query 114598 GTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CAT 114656 ||| |||||| | || | |||||||| ||||| | || ||||||||| | ||| | | | Sbjct 33945 GTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTT 33886 Query 114657 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTT 114716 | | | || | | || || | || ||| ||||||||| ||||| | ||||| Sbjct 33885 CTGTGCCTTG-ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTT 33827 Query 114717 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 114776 |||| || || || |||| | || || | | ||||| | ||| |||| Sbjct 33826 CAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACC 33767 Query 114777 ATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGA 114836 | | ||| |||||| ||||||||||||||||| || |||||||||||||| |||| | Sbjct 33766 ACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACA 33707 Query 114837 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 114896 || || ||| | ||||| | || || || ||||| || | ||| | | || Sbjct 33706 AGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGA 33647 Query 114897 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAG 114950 | || |||||||| || || | ||| | || | | | ||| |||| ||| Sbjct 33646 TGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGG-CACCTG--GACGCTTGTTGCCAC 33590 Query 114951 CCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAG 115010 | |||| |||||||| || ||| || || || || ||||| || ||||| || | | Sbjct 33589 CTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530 Query 115011 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCATGGATGTGCAT 115068 || |||||||| || ||| | ||| || || | || |||| | | Sbjct 33529 ATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTTGCACGGATGCAGTGGACATTGAG 33472 Query 115069 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 115128 |||||| || || || ||| ||||| || ||| |||| || ||||||| || Sbjct 33471 ACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCC 33412 Query 115129 GTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGT 115188 |||||||||||| |||| ||| || ||||||||| ||| | |||||| | || || Sbjct 33411 ATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGT 33352 Query 115189 ACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTTATCG 115246 ||| |||||||||||||| || | ||||| ||| | ||||| ||||| | | Sbjct 33351 ACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAGGTTG 33294 Query 115247 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 115306 || ||||| | | | |||||| || || ||||| || | | ||| ||||| | | Sbjct 33293 TATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATC 33234 Query 115307 ATGTATTGGGGTGTTTC--CATCAGGATACCATCGA 115340 |||| || ||| | || || ||| |||||||| Sbjct 33233 ATGTGCTGCGGTCTCTCTGCAACAG--CACCATCGA 33200 >seq23 Length=690853 Score = 145 bits (160), Expect = 9e-30 Identities = 565/875 (65%), Gaps = 25/875 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 |||||| || || |||||||| |||||||| ||||| || | | || |||||||| Sbjct 89229 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCAT 89170 Query 125818 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 125875 ||| |||||||| || | | || | || || ||| || || |||||| Sbjct 89169 AAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCC--AAGAGAGACGAGGAGT 89112 Query 125876 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 125935 ||||| | ||| | ||||||||||| ||| || | || ||||| | | | Sbjct 89111 CGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGG 89052 Query 125936 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCG 125995 ||||| || | ||| || ||| ||| |||||| || || ||||| | |||| | Sbjct 89051 CATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCT 88992 Query 125996 TGAA--TGGTGTCCACCCCAGGTCTATTGCGCAAA-GTCTTGAAGAGTTCCACGGCAAAC 126052 || | || || | ||| | || ||| | || | || || ||| || Sbjct 88991 TGTACCTGTTG--CTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAA 88935 Query 126053 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATG 126112 ||| |||||||||||||||||| |||||||| ||||| ||| ||||| |||||| Sbjct 88934 TCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATG 88875 Query 126113 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCC 126172 ||||| |||||||| | ||| || || | || || || ||||| ||||||||||| Sbjct 88874 AGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCG 88815 Query 126173 ACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AG-CGCGACTTTGTGTCAAACCACT 126230 ||| || || || | |||||| ||||||| || | || | | || ||| ||| Sbjct 88814 ACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTC-GTCTG-CAATCCAGC 88757 Query 126231 TCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTT 126290 || ||||| | || |||| || ||| ||||||| |||| ||| || || ||||| | Sbjct 88756 GCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGT 88697 Query 126291 CCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGT 126350 || | || | | | || |||||||| |||| ||||| || || || || || Sbjct 88696 GCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGT 88637 Query 126351 GGACCATTT----CATTATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGT 126406 ||| ||| ||| || ||| | | ||||| | || || || || || Sbjct 88636 GGATGTTTTCCGCCATGAT----CTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGG 88581 Query 126407 ACCTCATCGGCAAAATTGTTATTGATATTCTCAAAAACAATTCCATCGGACCCAGCAAAA 126466 || || | || ||| | | ||| ||| ||||| ||||| | ||||| Sbjct 88580 ACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAG 88521 Query 126467 AACGCCAGGATATACTTTATGAATTTCTGTTCATTCTCGTTCAG---GGTCTTCCAGTCG 126523 || || |||| | ||||| |||| | ||||| || | ||| ||||||| Sbjct 88520 AAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCG 88461 Query 126524 TCAAGATCCTTCGAGAGATCTACCTCCTCCGCAGTCCAATTGCTCATTTGAGCCTTCTTA 126583 | || ||||| ||||| || | |||||| || ||||| | || ||||| || Sbjct 88460 TGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTG 88401 Query 126584 TAGAGTTCCCAAAGGTGGGGATACTTCAGGGGGAA 126618 || | || ||||| | | ||||||| | |||||| Sbjct 88400 TACATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366 >seq11 Length=330268 Score = 136 bits (150), Expect = 5e-27 Identities = 211/296 (71%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 172609 ATTCAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAG 172668 ||| | |||||| || || ||||| || || |||| ||| ||| ||||||||||| || Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976 Query 172669 CCGACCATAGCG-AAG-CTCGGAAACATCTTGATACTCCTTACCCTGTTGAAGACCCAAG 172726 |||| || || ||| || || | || || |||| || || || || | ||| | Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034 Query 172727 ATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCGCGG 172786 ||| |||||| || | || || || | ||| ||| || ||| ||||| || Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094 Query 172787 ACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAA 172846 ||||| |||| ||||| | ||||||||||| ||||||| || ||||| ||||| Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154 Query 172847 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 172902 | ||||||| ||||| ||||| |||||||| || ||||||| |||||| ||||| Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210 Score = 104 bits (114), Expect = 3e-17 Identities = 172/241 (71%), Gaps = 12/241 (5%) Strand=Plus/Plus Query 171905 GCATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGT-TCAAGGAGATTGAT 171963 |||||||| |||||| | |||| || || ||||||||| || ||||| | |||||| Sbjct 286216 GCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAG-ACATTGAT 286274 Query 171964 ATTGTTTGAACCCATGTAGTCATTG-GCCAACTTGACAATCGTATCCGCGAGGGAGACTT 172022 ||||||| |||| || |||| ||||| |||||| || | || |||||||||| Sbjct 286275 GTTGTTTGCGCCCACAAAGG-ATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTT 286333 Query 172023 CACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCC----AACTGTGCCACCTTC 172078 |||||||||||||||| | ||| | || || ||| ||| | ||| || ||||| Sbjct 286334 CACCGTGATGGTAGGCAG---TGTGCTCGCCA-ACGTAGCCACAGAGCTGAGCAACCTTG 286389 Query 172079 ATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTG 172138 || || ||||||| || | |||||| ||| ||| | || | |||| |||||| Sbjct 286390 ATTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTG 286449 Query 172139 A 172139 | Sbjct 286450 A 286450 >seq2 Length=565986 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/330 (66%), Gaps = 17/330 (5%) Strand=Plus/Minus Query 10872 TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 10931 |||| || ||||||||||| | || || |||| ||| ||| |||||||| || | Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613 Query 10932 CGGGCATA----CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 10987 | | || | ||||| || || ||| || | |||||||||||||||| || Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553 Query 10988 ACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCG 11047 ||||| |||||| ||| | || ||| |||| | || || |||| | ||| Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493 Query 11048 ACACCCACAAACATTTCCACAAAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACG 11101 ||||| |||||||||||||| || | | ||| || || || ||| || ||| Sbjct 335492 ACACCGACAAACATTTCCACGAACT------CTGAACCACTGACGCTGAAGAAAGGTACG 335439 Query 11102 TTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCG 11161 | |||||| || | ||| || || || ||||| || || || || || | Sbjct 335438 CCTGCTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAA 335379 Query 11162 AGAAGGGCACCACGTGGGATCCTGGCACCA 11191 |||| |||||| || |||||| |||| ||| Sbjct 335378 AGAATGGCACCTCGAGGGATCTTGGCGCCA 335349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597353271455520