Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_010240.1
Length=169794
Score E
Sequences producing significant alignments: (Bits) Value
seq43 129 6e-25
seq40 116 4e-21
>seq43
Length=605699
Score = 129 bits (142), Expect = 6e-25
Identities = 174/237 (73%), Gaps = 4/237 (2%)
Strand=Plus/Plus
Query 41974 TTTATCGACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGT 42033
|||| | ||||| | | |||||||||||| |||||||| |||||| ||||| ||||
Sbjct 450416 TTTACTGTCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGT 450475
Query 42034 AATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGT 42093
| || |||| ||| || | || || |||||||| ||||| || ||||| ||||||||||
Sbjct 450476 AGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGT 450535
Query 42094 CGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCG-CCACCGTGTCGCT 42151
| | ||| | | ||||||| | ||| | || | |||| ||| | | | |||||
Sbjct 450536 CAGGTGGAATACCTTCCTTGT-CTTGAATCTTGCTCTTGA-CGTTGTCAATGGTGTCTGA 450593
Query 42152 CGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208
|| || || |||| |||||||| || || || || ||||| || || ||||||||
Sbjct 450594 TGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Score = 116 bits (128), Expect = 4e-21
Identities = 143/193 (74%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| ||||||||||| || |||| ||| || | || || |||||||| ||||| ||
Sbjct 451143 CTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAA 451202
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135
||||| |||||||| || | ||| | || |||||||||| ||| | || | ||||
Sbjct 451203 AATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCC-TGAATCTTGCTCTTGACAT 451261
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| || || || |||| |||||||| || || || || ||||| |
Sbjct 451262 TGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGA 451321
Query 42196 CAAAGATTTGCAT 42208
||||||| |||||
Sbjct 451322 CAAAGATCTGCAT 451334
Score = 102 bits (112), Expect = 9e-17
Identities = 142/194 (73%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || |||||||| || || || || || |||| || |||||||| ||||| ||
Sbjct 450687 CTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 450746
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135
||||| ||||||||||| | ||| | || |||||||| | ||| | || | |||| ||
Sbjct 450747 AATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGT-CTTGAATCTTGCTCTTGA-CG 450804
Query 42136 TCG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTT 42194
| | | | ||||| ||||| || |||| || ||||| || || || | |||||
Sbjct 450805 TTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTA 450864
Query 42195 ACAAAGATTTGCAT 42208
|| || || |||||
Sbjct 450865 ACGAAAATCTGCAT 450878
Score = 96.9 bits (106), Expect = 4e-15
Identities = 135/187 (72%), Gaps = 2/187 (1%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || | || || |||||||||||||||||
Sbjct 451371 CTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAA 451430
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135
|| | ||||||||||| | ||| | | ||||||||| ||| |||| | ||||
Sbjct 451431 AATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCC-TGAATTTTCGACTTGACAT 451489
Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195
| | | ||||| ||||| || || | || ||||| ||||| || || ||||| |
Sbjct 451490 TGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGA 451549
Query 42196 CAAAGAT 42202
|||||||
Sbjct 451550 CAAAGAT 451556
Score = 89.7 bits (98), Expect = 6e-13
Identities = 135/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || |||| ||| || |||| || |||||||| ||||| ||
Sbjct 450915 CTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 450974
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | ||| | | |||||||| ||| || |||| |
Sbjct 450975 AATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTTGACATT 451034
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| || || || || | || ||||| || || || | |||||| ||
Sbjct 451035 GTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGAC 451094
Query 42197 AAAGATTTGCAT 42208
|| ||||||||
Sbjct 451095 GAAAATTTGCAT 451106
>seq40
Length=667070
Score = 116 bits (128), Expect = 4e-21
Identities = 141/192 (73%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076
|||||| || || ||||| || || || || || |||| || |||||||| ||||| ||
Sbjct 1469 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 1410
Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136
||||| ||||||||||| | || | || ||||||||| |||||| |||| |
Sbjct 1409 GATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTGACATT 1350
Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196
| | ||||| || || || |||| |||||||| |||||||| || ||||| ||
Sbjct 1349 GTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1290
Query 42197 AAAGATTTGCAT 42208
|||||||||||
Sbjct 1289 GAAGATTTGCAT 1278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 543212501232960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |