Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq43 127 2e-24 seq40 122 9e-23 >seq43 Length=605699 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | || || || || || |||||||| ||||| Sbjct 450879 ACCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGC 450938 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| |||||||||||||| ||| ||||||| ||||||||||| || || Sbjct 450939 CAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGG 450998 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || ||||| || ||||| || || ||| ||| || | || || | || || Sbjct 450999 GATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTAC 451058 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||| || ||||| || || |||||||||||||| Sbjct 451059 CTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | || || || || || || ||||| ||||| Sbjct 450651 ACCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGC 450710 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| |||| |||||||||||||| ||| ||||||| ||||||||||| || || Sbjct 450711 AAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGG 450770 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || || || ||||| || || ||| || || | || || | || || Sbjct 450771 AATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGAC 450830 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| | || | |||||| || |||||||| || |||||||| ||||| Sbjct 450831 TTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||||||||| || || | ||||| | || ||||||||||| || Sbjct 450454 GTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCA 450513 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||| || ||||| ||||| || ||||| || || ||| Sbjct 450514 GCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTG 450573 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || || | || || | || || || | || | |||||| || |||| ||| Sbjct 450574 ACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTC 450633 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||||||||| Sbjct 450634 TTGACGAAAATTTGCAT 450650 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| || || | || || || || || |||||||| ||||| | ||||| | ||| Sbjct 451351 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCT 451410 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 ||||||||||| || || |||| | ||||||||||| || ||||| ||||| || || Sbjct 451411 TCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCC 451470 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || ||||| ||| ||| || | || || || || || || | || | |||| Sbjct 451471 TGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTC 451530 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAAT 64437 ||||| || | || || || || || Sbjct 451531 TTGCCAGTAAGTGTCTTGACAAAGAT 451556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || ||||| ||||| || || | ||||| | || |||||||||||||| Sbjct 451138 GTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCA 451197 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| ||||||| |||||||| || || ||||| || || || || || || || ||| Sbjct 451198 GCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 451257 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | || || | || || || | || | |||||| || || | ||| Sbjct 451258 ACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTC 451317 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 451318 TTGACAAAGATCTGCAT 451334 >seq40 Length=667070 Score = 122 bits (134), Expect = 9e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || |||||||| ||||||| ||||| |||| || ||||||||||| Sbjct 1474 GTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 1415 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 ||| | ||||| ||||||||||| || || || ||||| || || || ||||| ||| Sbjct 1414 GCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTG 1355 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| || | ||| || || || || || | || | ||||||||| || | || Sbjct 1354 ACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 1295 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| |||||||| Sbjct 1294 TTGACGAAGATTTGCAT 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499644525195360