Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq43 129 6e-25 seq23 98.7 1e-15 seq40 87.8 2e-12 >seq43 Length=605699 Score = 129 bits (142), Expect = 6e-25 Identities = 168/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || || || | |||||||||| ||||||||||||||| | Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||||| || || || || | | |||| |||||||| ||||| || || Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| ||| | || | || | ||| || | |||||| | ||||| | Sbjct 450544 ATACCTTCCTTGTC-TTGAATCTTGCTCTTGACGTTG-TCAATGGTGTCTGATGACTCTA 450601 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||||| || | || || ||||||||||| || || ||||| ||||| Sbjct 450602 CCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 100 bits (110), Expect = 3e-16 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || ||||||||||| || ||| || |||||| || || || || | Sbjct 450911 TTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAG 450970 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTT 138537 | | || |||||||| ||||| || || |||||||| ||||| ||| || | || Sbjct 450971 CAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTTGA 451030 Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597 |||| || | |||||| | ||||| ||||| | || | || || ||||||| || Sbjct 451031 CATTG-TCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGTC 451089 Query 138598 TTTACAAAAATCTGCAT 138614 || || ||||| ||||| Sbjct 451090 TTGACGAAAATTTGCAT 451106 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| || || |||||||| | || || |||||| || || || || | Sbjct 450683 TTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAG 450742 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | | || |||||||| ||||| || || || || || ||||| ||| | || | || Sbjct 450743 CAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT-TGAATCTTGCTCTTG 450801 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | |||| | | |||||| | || || || |||| || | || || ||||||| ||| Sbjct 450802 ACGTTGT-CAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGT 450860 Query 138597 TTTTACAAAAATCTGCAT 138614 || || ||||||||||| Sbjct 450861 CTTAACGAAAATCTGCAT 450878 >seq23 Length=690853 Score = 98.7 bits (108), Expect = 1e-15 Identities = 123/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 52669 TGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG 52728 |||| || || || || |||| |||||||||| || ||||| || ||||| || | | Sbjct 89060 TGGGTATCAATGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCG 89119 Query 52729 TGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788 | || || | ||||| || || | ||||||| ||||| |||||| | |||| Sbjct 89120 TCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACA 89179 Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||| || | |||||||||||||| || |||||||| ||||| || || Sbjct 89180 TTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 89228 >seq40 Length=667070 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | || || ||||||||| || || || | | Sbjct 1471 GACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCA 1412 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539 |||| |||||||| ||||| || || || ||||| ||||| |||||| || | | Sbjct 1411 AAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTGACA 1352 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 ||| || | ||||| | ||||| ||||||| || | || || || || || || || Sbjct 1351 TTG-TCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTT 1293 Query 138600 TACAAAAATCTGCAT 138614 || || || ||||| Sbjct 1292 GACGAAGATTTGCAT 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262127055680