Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq43 129 6e-25
seq23 98.7 1e-15
seq40 87.8 2e-12
>seq43
Length=605699
Score = 129 bits (142), Expect = 6e-25
Identities = 168/229 (73%), Gaps = 4/229 (2%)
Strand=Plus/Plus
Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447
|| || || | |||||| || || || | |||||||||| ||||||||||||||| |
Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483
Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507
| ||| || ||||| || || || || | | |||| |||||||| ||||| || ||
Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543
Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565
|||||||| ||||| ||| | || | || | ||| || | |||||| | ||||| |
Sbjct 450544 ATACCTTCCTTGTC-TTGAATCTTGCTCTTGACGTTG-TCAATGGTGTCTGATGACTCTA 450601
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614
|||||| || | || || ||||||||||| || || ||||| |||||
Sbjct 450602 CCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Score = 100 bits (110), Expect = 3e-16
Identities = 142/197 (72%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || ||||||||||| || ||| || |||||| || || || || |
Sbjct 450911 TTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAG 450970
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGAT-TTTTTGTTTT 138537
| | || |||||||| ||||| || || |||||||| ||||| ||| || | ||
Sbjct 450971 CAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTTGA 451030
Query 138538 AATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTT 138597
|||| || | |||||| | ||||| ||||| | || | || || ||||||| ||
Sbjct 451031 CATTG-TCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGTC 451089
Query 138598 TTTACAAAAATCTGCAT 138614
|| || ||||| |||||
Sbjct 451090 TTGACGAAAATTTGCAT 451106
Score = 82.4 bits (90), Expect = 8e-11
Identities = 139/198 (70%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478
|||||||||| || || |||||||| | || || |||||| || || || || |
Sbjct 450683 TTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAG 450742
Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538
| | || |||||||| ||||| || || || || || ||||| ||| | || | ||
Sbjct 450743 CAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT-TGAATCTTGCTCTTG 450801
Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
| |||| | | |||||| | || || || |||| || | || || ||||||| |||
Sbjct 450802 ACGTTGT-CAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGT 450860
Query 138597 TTTTACAAAAATCTGCAT 138614
|| || |||||||||||
Sbjct 450861 CTTAACGAAAATCTGCAT 450878
>seq23
Length=690853
Score = 98.7 bits (108), Expect = 1e-15
Identities = 123/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 52669 TGGGCATGAACGCGCAGTCCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGG 52728
|||| || || || || |||| |||||||||| || ||||| || ||||| || | |
Sbjct 89060 TGGGTATCAATGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCG 89119
Query 52729 TGCAGCTCGGGCAGCCAAAGTACTTCAACGCTCGCAATCCGTTTGAGTTTATGAACAACA 52788
| || || | ||||| || || | ||||||| ||||| |||||| | ||||
Sbjct 89120 TCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACA 89179
Query 52789 TTTCGCTTGAGGGCAAGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837
|||| || | |||||||||||||| || |||||||| ||||| || ||
Sbjct 89180 TTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 89228
>seq40
Length=667070
Score = 87.8 bits (96), Expect = 2e-12
Identities = 138/195 (71%), Gaps = 2/195 (1%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| | || || ||||||||| || || || | |
Sbjct 1471 GACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCA 1412
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA-A 138539
|||| |||||||| ||||| || || || ||||| ||||| |||||| || | |
Sbjct 1411 AAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTGACA 1352
Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599
||| || | ||||| | ||||| ||||||| || | || || || || || || ||
Sbjct 1351 TTG-TCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTT 1293
Query 138600 TACAAAAATCTGCAT 138614
|| || || |||||
Sbjct 1292 GACGAAGATTTGCAT 1278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496262127055680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |