Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq43 122 8e-23 seq23 116 4e-21 >seq43 Length=605699 Score = 122 bits (134), Expect = 8e-23 Identities = 172/238 (72%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 126877 CTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATT 126936 || ||||| ||| || || | ||||||||||| || | || ||||| || ||||| || Sbjct 450415 CTTTACTG-TCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTT 450473 Query 126937 GTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTG 126996 ||| ||| ||| |||||| ||| || ||||| |||||||| |||| | |||||||| Sbjct 450474 GTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTG 450533 Query 126997 ATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCG 127055 || || || || || |||||||| || || ||||| |||| || | |||||| | Sbjct 450534 GTCAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTG-TCAATGGTGTCTG 450592 Query 127056 TACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| || |||| || | || || || |||||||| || || ||||| ||||| Sbjct 450593 ATGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||||||||| ||| ||| |||||| ||| || ||||| || ||| Sbjct 451138 GTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCA 451197 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || | || | ||||||||||| || || ||||||||||||||| || || |||| Sbjct 451198 GCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTG 451257 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | || | |||||| | ||| || |||| || | || || || || ||||| Sbjct 451258 ACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTC 451317 Query 127097 TTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 451318 TTGACAAAGATCTGCAT 451334 Score = 98.7 bits (108), Expect = 9e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||| | || | || ||||| || || |||||||| || | Sbjct 450652 CCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCA 450711 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | |||||| || || ||||| || ||||| | || | |||||||| || || || Sbjct 450712 AGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGA 450771 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||||||||| || || ||||| |||| || | |||||| | ||||| Sbjct 450772 ATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTG-TCAATGGTGTCTGATGATTCGAC 450830 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||| || | || || || |||| ||| || || ||||||||||| Sbjct 450831 TTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 >seq23 Length=690853 Score = 116 bits (128), Expect = 4e-21 Identities = 281/421 (67%), Gaps = 7/421 (2%) Strand=Plus/Plus Query 47160 GTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATATTTTACATGAAAACCAAAGGA 47219 |||||||| |||| ||||| ||| || || | || |||| | || | || Sbjct 88813 GTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGT 88872 Query 47220 GTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCGAGAGACGAAGGCCTGCACACC 47279 | ||||| || ||||| |||||||| ||||| ||||| | ||||| || || ||||| Sbjct 88873 CTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACACA 88932 Query 47280 AACTTTGCCTGTCTCTACTACAA-CACTAGAGTCGATCAAAAGTTGGACGTGCCCACCGT 47338 | || |||||||||| | | |||| || || ||| || | | | || | Sbjct 88933 GATTTCGCCTGTCTCTTGTTTAGTCACTTGAA--GAACAAGCCTTCAAAG---CAACAGG 88987 Query 47339 CAGC-GACATGTTTGCCGAAGCCGTCGCCATTGAGATGGAGTTTTTCGCCGAGGCTCTGC 47397 | ||||| || | ||||| || | |||||| || || || | || | || | Sbjct 88988 TACAAGACATCATTACTGAAGCTGTTGAGATTGAGCAGGCTTTCCTCACAGACTCCCTAC 89047 Query 47398 CCGAATCTTTAGTGGGAATGAACGCGGAGATGATGAGAAAGTACATCGAATTTGTCGCCG 47457 | | ||| |||| || || || || | ||| | ||||||| ||||||||||| | Sbjct 89048 CATGCCCCTTATTGGGTATCAATGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCTG 89107 Query 47458 ACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATTTACCACACCGAGAATCCATTCGAGT 47517 | || || ||||| || | ||| | || |||||| |||||||| || | Sbjct 89108 ATCGACTCCTCGTCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTGACT 89167 Query 47518 TTATGAACAACATTTCGCTCGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCGGCGAAT 47577 ||||| | |||||||| |||| |||||||||||||| || |||||||| ||||| || | Sbjct 89168 TTATGGAGAACATTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTGACT 89227 Query 47578 A 47578 | Sbjct 89228 A 89228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500538474560