Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq43 100 3e-16 >seq43 Length=605699 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 45113 TCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCT 45172 |||||| || || | |||||| | |||| ||||| ||||| || || || || ||| Sbjct 450423 TCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGC 450482 Query 45173 GACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGG 45232 | || | ||| || | || ||||| || | || | || |||||||| || || Sbjct 450483 CAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGG 450542 Query 45233 AATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGA 45291 ||| ||||| || |||||||| || |||| || | || | |||||| || ||||| | Sbjct 450543 AATACCTTCCTTGTCTTGAATCTTGCTCTTGA-CGTTGTCAATGGTGTCTGATGACTCTA 450601 Query 45292 CTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| || | || || || || ||||| || || ||||||||||| Sbjct 450602 CCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 45131 CACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA--ATCG 45188 ||| || || || ||||| ||||| ||||| || || || || || | || ||| Sbjct 451353 CACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTC--TGCAAGTGTGCGACCATCT 451410 Query 45189 TCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCT 45248 || | || || || ||| | ||||| || ||||||||||| ||||| ||||| || || Sbjct 451411 TCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCC 451470 Query 45249 TGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTT 45308 |||||||| |||| || | |||||| || || || || || || |||| || Sbjct 451471 TGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTC 451530 Query 45309 TTGCCGGTTAGAGTTTTTACAAAAAT 45334 ||||| || || || || ||||| || Sbjct 451531 TTGCCAGTAAGTGTCTTGACAAAGAT 451556 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452002951398240