Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq43 293 3e-74 seq23 163 3e-35 seq11 136 5e-27 seq2 87.8 2e-12 >seq43 Length=605699 Score = 293 bits (324), Expect = 3e-74 Identities = 1145/1778 (64%), Gaps = 59/1778 (3%) Strand=Plus/Minus Query 115558 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 115617 || ||||||||||| ||||||||||| |||| |||||| |||| | ||||| || | Sbjct 34952 CGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTA 34893 Query 115618 AACTTGGAGAGTGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 115675 | || || ||| || ||| ||| | ||| | ||| || ||||| || | Sbjct 34892 ATTTTACCGAATGTCGGCGCCTTGAGATGCAA--GTTGAGGGATTGCGACTGATCAATAA 34835 Query 115676 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTC 115735 || || || || || |||||||| ||||| | || || ||||| ||||| Sbjct 34834 AGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATACAGTCT 34775 Query 115736 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATAGAGCCACCTGCCT 115795 |||||||| || | || | ||||| | ||| ||||| | ||||||||| | Sbjct 34774 TGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGG 34715 Query 115796 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTCTTGAGATCCT----CC 115851 | ||| ||| |||||||| || ||||||||| || |||| |||||||| | Sbjct 34714 CAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTTGAGCA 34655 Query 115852 ACGAGGTGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATGTTG 115911 || | | | || || || |||||||| || ||| || | | || |||||| Sbjct 34654 ACCAAGGG----TTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTG 34599 Query 115912 GTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGC 115971 ||||||| ||||||||||| |||||| ||||| || || | ||||| || |||||| Sbjct 34598 CTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGC 34539 Query 115972 ATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCCTTGAGGGCG 116031 || ||||| | ||| |||||||| ||| | ||| | || ||||| | Sbjct 34538 ATCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGCAATCTGCTCTTTGAGCGTC 34479 Query 116032 TCCCAGTCGTAGTTGAGCTTTGT---CTCCCCCTCCCACATATCAAACTGGAGGATACCT 116088 ||||||| | |||||| || | | ||||| ||| |||| | | || Sbjct 34478 GCCCAGTCCCA---GAGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCCC 34422 Query 116089 TGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAG 116148 || || || || || ||||| | || ||||| ||||| | | |||| || | Sbjct 34421 TGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACAC 34362 Query 116149 CTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGGCC 116208 || || || || |||| || || |||||||| || | |||| |||||||| Sbjct 34361 GAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCC 34302 Query 116209 TCGTCGGAATCAAACGCGAG---ACGGCACAAAATAAATACATCCGCGAGACCTTGGACA 116265 ||| || || || | || | | ||| || |||| ||||||||||| ||| Sbjct 34301 TCGGGCGAGTCGAATGGCAGCTTAAGTGCCAA---GAAGGCATCGGCGAGACCTTGCACA 34245 Query 116266 CCGAGGCCAATTGGGCGATGTCTCATATTAG-ACTTTCGAGCGGTCTCCACGGGATAAAA 116324 || || || || || || || | | | || | || || ||| || || || | Sbjct 34244 CCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTC-AGCTTCAATGACTGGGTAGTA 34186 Query 116325 ATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTT 116384 || ||||| | | | || | || | |||||||| | || || || ||||| Sbjct 34185 GTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTT 34126 Query 116385 TTCGTAATCAAAACTGCGAGTCTCTTC------ATTGACATACTTAGGAAGGGCGATTGA 116438 | | | || | | | || ||| | | || | | || | ||| || || Sbjct 34125 CTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGA 34066 Query 116439 CGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAA 116498 || ||||| || |||| |||||| | | |||||| | ||| || |||||||| Sbjct 34065 GGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAA 34006 Query 116499 ATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTT 116558 || | ||| ||||| || | |||||| || || ||||| ||| || || ||||| Sbjct 34005 GTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTT 33946 Query 116559 GTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-CAT 116617 ||| ||||| | || | |||||||| ||||| | || ||||||||| | ||| | | | Sbjct 33945 GTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTT 33886 Query 116618 CGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCCT 116677 | | | || | | || || | || ||| ||||||||| ||||| | ||| | Sbjct 33885 CTGTGCCTTG-ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTT 33827 Query 116678 CAAACTCTTCACC-CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGAAGAGAGAC 116736 |||| || || || ||| |||| | || || | | || || | ||| ||| Sbjct 33826 CAAATTCATCGCCATACA-CCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGAC 33768 Query 116737 CATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAG 116796 || | ||| |||||| || |||||||||||||| || ||||||||||| || |||| Sbjct 33767 CACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAAC 33708 Query 116797 AGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATG 116856 | || || ||| | ||||| | || || || ||||| || | ||| | | | Sbjct 33707 AAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAG 33648 Query 116857 ATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTGCGACG------ACCA 116910 || || |||||||| || || | ||| | || | | | ||| |||| ||| Sbjct 33647 ATGTCTGCGTGCCATGGCTCAATGTAAATAGC-AAAGGCACCT--GGACGCTTGTTGCCA 33591 Query 116911 GCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATACCATCA 116970 | |||| |||||||| || || ||| || || || ||||| || ||||| || | Sbjct 33590 CCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTG 33531 Query 116971 GATTGGCCATTTGTCCCCCGAATACGAGACT---TGTTGGCTCTGACATCGTGGATGTGC 117027 ||| |||||||| || ||| | ||| |||| || | || ||||| | Sbjct 33530 GATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTT-GCACGGATGCAGTGGACATTG 33474 Query 117028 ATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTAGATC 117087 | |||||| || || || ||| ||||| || ||| |||| || ||||||| Sbjct 33473 AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATG 33414 Query 117088 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCTTGGT 117147 ||||||||||||||| |||| ||| || |||||||| ||| | |||||| | || Sbjct 33413 CCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGC 33354 Query 117148 GTACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTTAT 117205 ||||| |||||||||||||| || | ||||| ||| | ||||| ||||| | Sbjct 33353 GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAGGT 33296 Query 117206 CGTAGGTCTCCAAGACAGAGGGAATGTCTTCCCCGTGAATACCGATTGAGACCCGCATAA 117265 ||| ||||| | | | |||||| || || ||||| || | | ||| ||||| | Sbjct 33295 TGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGA 33236 Query 117266 ACATGTATTGGGGTGTTTC--CATCAGGATACCATCGA 117301 ||||| || ||| | || || ||| |||||||| Sbjct 33235 TCATGTGCTGCGGTCTCTCTGCAACAG--CACCATCGA 33200 >seq23 Length=690853 Score = 163 bits (180), Expect = 3e-35 Identities = 392/583 (67%), Gaps = 20/583 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 |||||| ||||| |||||||| |||||||| ||||| ||| |||| || |||||||| Sbjct 89229 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCAT 89170 Query 127291 AAAATCAAATGGGTTCTTTGAGT--TCCAAATTGTTGGCACCCCAATCTGTTTGAGGAGA 127348 ||| |||||||| || | | || | || || ||| || || |||||| Sbjct 89169 AAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCC--AAGAGAGACGAGGAGT 89112 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||| | ||| | ||||||||||| ||| || | || ||||| | | | Sbjct 89111 CGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGG 89052 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 ||||| || | ||| || ||| ||| |||||| || |||||||| | |||| | Sbjct 89051 CATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCT 88992 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT--CTTGA--AGAGTTCCACAG-CAA 127523 || | | | ||| | || | | |||| || | |||| |||| | | Sbjct 88991 TGTACCTGTTGCTTTGAAGGCTTGTT-CTTCAAGTGACTAAACAAGAG----ACAGGCGA 88937 Query 127524 ACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCA 127583 | ||| |||||||||||||||||| |||||||| ||||| ||| || || |||| Sbjct 88936 AATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCA 88877 Query 127584 TGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCT 127643 ||||||| |||||||| | ||| || || | || ||||||||||| ||||| |||| Sbjct 88876 TGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCT 88817 Query 127644 CCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACT--TTGTAT-CAAACC 127700 | ||| || || || | |||||| ||||||| |||| | || | ||| || Sbjct 88816 CGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCC 88760 Query 127701 ACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGA 127760 | || ||||| | ||| |||| || ||| || |||| |||| ||| || || |||| Sbjct 88759 AGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGA 88700 Query 127761 GTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 127803 | | || | || | | | || |||||||| |||| ||||| Sbjct 88699 GGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAG 88657 >seq11 Length=330268 Score = 136 bits (150), Expect = 5e-27 Identities = 211/296 (71%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 176629 ATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATGAG 176688 ||||| |||||| || || ||||| || || |||| ||| ||| |||||||||||||| Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976 Query 176689 CCGACCATAGCG-AAG-CTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAA 176746 |||| || || ||| || || | || || || | || || || || | ||| | | Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034 Query 176747 ATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCGTCGCGG 176806 ||| |||||| || | || || || | ||| ||| || ||| || || || Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094 Query 176807 ACATTTTTACACTTCCCGCGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAG 176866 ||||| |||| || || | ||||||||||| ||||||| || ||||| ||||| Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154 Query 176867 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 176922 | ||||||| ||||| ||||| |||||||| || ||||||| |||||| ||||| Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210 Score = 116 bits (128), Expect = 5e-21 Identities = 309/459 (67%), Gaps = 16/459 (3%) Strand=Plus/Plus Query 175709 ATGTCCTTGGGATTGAATGGTGGCACATAGCAACTGA--AACCTGTGCCAATACCTTCGG 175766 ||||||||||||||||| ||| | | | || | || || |||||||| || Sbjct 286000 ATGTCCTTGGGATTGAAATTTGGAATGT--CTGTGGACCAGCCAGTACCAATACCCGAGG 286057 Query 175767 TGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAGTCTGGTTCAATCGCACGCC 175826 | ||||| || || | ||| || ||| |||| ||| | ||||| || | | | | Sbjct 286058 TACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCATTCTGGCTCTACCATGAGAC 286117 Query 175827 CATCATCGTCCAAATAGTTGAGCACGGGGTCATC--CCTCGGATCAAAGAT--TTTACGA 175882 | |||||| || || ||||||| || ||| | ||| | |||||| ||| | Sbjct 286118 CGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCGCA--AAAGATCTTTTTTGT 286175 Query 175883 GCATCCTTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATG 175942 | || | | ||| | || |||||||| | || | |||||||| |||||| | Sbjct 286176 G-ATGCGAGCCAAGTCT-GTAAAGATGTAACGCGCGCTGGCAGCATCTTTACCACCCTGG 286233 Query 175943 AGACGCGTCCCAAATTGACCACATGGC-TCAAGGAGATTGATATTGTTTGAGCCCATATA 176001 |||| || || ||||||||| ||| ||||| | |||||| ||||||| ||||| | | Sbjct 286234 TGACGTGTACCGAATTGACCATTGGGCATCAAG-ACATTGATGTTGTTTGCGCCCACAAA 286292 Query 176002 GTCATTCGCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAGGCCGA 176061 | | ||||| |||||| || | || |||||||||||||||||||||||||| | Sbjct 286293 GGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTTCACCGTGATGGTAGGCAGT 286352 Query 176062 CTTGTCCGCCACATACGCCGC-CAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTGT 176120 | || | || || ||| | | ||| || ||||| || || ||||||| || | Sbjct 286353 GTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGATTTCCGCCTTGAGCTTGCGCT 286411 Query 176121 GGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGA 176159 |||||| ||| ||| | || | |||| ||||||| Sbjct 286412 TGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGA 286450 >seq2 Length=565986 Score = 87.8 bits (96), Expect = 2e-12 Identities = 219/330 (66%), Gaps = 17/330 (5%) Strand=Plus/Minus Query 12787 TATCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCG 12846 ||||||| ||||||||||| | || || |||| ||| |||||||||||| || | Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613 Query 12847 CGGGCATA----CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAA 12902 | | || | ||||| || || ||| || | ||||||||||| || | || Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553 Query 12903 ACGATACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 12962 ||||| |||||| ||| | || ||| |||| | || ||||||| | ||| Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493 Query 12963 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACG 13016 ||||| |||||||| ||||| || | | ||| || || || ||| || ||| Sbjct 335492 ACACCGACAAACATTTCCACGAACT------CTGAACCACTGACGCTGAAGAAAGGTACG 335439 Query 13017 TTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCCGCG 13076 | |||||| || | ||| || || || ||||| || || ||||| || | Sbjct 335438 CCTGCTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAA 335379 Query 13077 AGAAGGGCACCACGTGGGATCCTGGCACCA 13106 |||| |||||| || |||||| |||| ||| Sbjct 335378 AGAATGGCACCTCGAGGGATCTTGGCGCCA 335349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613506862571040