Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq23 105 1e-17 >seq23 Length=690853 Score = 105 bits (116), Expect = 1e-17 Identities = 372/570 (65%), Gaps = 22/570 (4%) Strand=Plus/Minus Query 159912 TAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGG 159971 |||||| ||| || || || || ||| || |||||||| |||||||||| ||| ||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 159972 ACATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCAC 160031 | | |||| |||||||||| |||||| ||||||||||| |||| || || | | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 160032 CGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGT 160091 | |||||||| ||||| || || ||||| ||||| || | | |||| | | | Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 160092 TGGTGTCATGGGTCCACCTTTTGGCCCATTCAGCCTTCTTTGC--GATGCACGGCATGCG 160149 | ||| |||| | ||||| || || | ||||| ||||||||| || Sbjct 88774 CGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGC--TTTTTGCTTGATGCACGGGATTGT 88717 Query 160150 CTCGACGGCGTTAAACAATCTGTCCTGCTCCTTCA----CATCCTTGATCAGAGTAGCAA 160205 ||||| || | || | || |||| | || | |||||||| ||| ||| Sbjct 88716 CTCGATTGCATCGAAGA---GGTGCTGC-CGTTGAGCTTGTTCCTTGATGTATGTATCAA 88661 Query 160206 TCAGCTTCGAGTACATTTCTGCGTGCACATTTT---CGATGGCCATCTGAAAGTTGTAGA 160262 | || ||||| | |||| ||| | |||| | ||| ||||| ||| |||| Sbjct 88660 TGAGGAGGGAGTAGGTCTCTGAGTGGATGTTTTCCGCCATG---ATCTGGAAGCCATAGA 88604 Query 160263 AATATGTCGCCTCCAGATAC-TGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTA 160321 | || |||| | | ||| || || || | | ||| | | || ||| |||| Sbjct 88603 AGCATCGTGCCT-CTGGTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTG 88545 Query 160322 ACCAACCCGTCGGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCT 160381 || | || || ||| ||||||||||| | ||||| |||||||| | ||||| Sbjct 88544 ACAATGCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCG 88485 Query 160382 TTGTTGAGTCTCTTTTCCCAGT-GTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCT 160440 | |||||| | || ||||||| ||| || ||| | || | |||| ||| || ||| | Sbjct 88484 TCGTTGAGCTTGTTCTCCCAGTCGTG-CAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGT 88426 Query 160441 CCAATTGGCAGCCTGAGCAGTTTTGTACAT 160470 ||| || || | || |||||||||| Sbjct 88425 CCAGAAGGATGCTTCTGCCTTTTTGTACAT 88396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795154762664640