Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq43 150 4e-31 seq40 134 3e-26 seq30 105 2e-17 seq19 105 2e-17 >seq43 Length=605699 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || || | ||| | || |||||||| || | ||||||||| |||||||| Sbjct 450430 CGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTG 450489 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || ||||||||||| || |||||||||||||||||||| || ||| ||| Sbjct 450490 CGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCT 450549 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || |||||||| ||| ||| || | |||||||| || ||||| || | Sbjct 450550 TCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGT 450609 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| || || ||||| || || |||||||| Sbjct 450610 GTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTG 450647 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 |||||||||||||| || |||||||| || | |||||||| |||||||| | ||||| Sbjct 451123 AGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCC 451182 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || |||||||||||||| || || ||| || || ||| Sbjct 451183 TCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCC 451242 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| || || | |||||||| || || || || | ||||| ||| Sbjct 451243 TGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTC 451302 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || ||||| || ||||| || || Sbjct 451303 TTTCCAGTAAGAGTCTTGACAAAGATCTG 451331 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||||||||| |||||||| |||| ||||||||| |||||||| Sbjct 450886 CGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTG 450945 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| || || || ||||||||||||||||| || || ||| Sbjct 450946 CGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCT 451005 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || || || ||||| ||| || || | |||||||| || ||||| || | Sbjct 451006 TCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACCTCAAGT 451065 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || | || || || |||||||| Sbjct 451066 GTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTG 451103 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | || |||||||||||||| |||||||| |||| ||||||||| || | || Sbjct 451342 CGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTG 451401 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||| |||||||| || ||||| || | ||||||||||||||| ||| ||| Sbjct 451402 CGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCT 451461 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || |||||||| || ||| || || | |||||||| | ||| || || | Sbjct 451462 TCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGG 451521 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAAT 199623 || || ||||| || || || || || ||||| || Sbjct 451522 GTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGAT 451556 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || |||||||||||||| |||||||| |||| |||||||| || | || | || || Sbjct 450667 AGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCC 450726 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || || ||||||||||||||||| || ||| || || || Sbjct 450727 TCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCT 450786 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| || | |||||||| || ||| || || | || || ||| Sbjct 450787 TGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTC 450846 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || | ||| || || ||||| || Sbjct 450847 TTTCCAGTCAAAGTCTTAACGAAAATCTG 450875 >seq40 Length=667070 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| |||||||||||||||||||| |||| ||||||||| || | || | || || Sbjct 1489 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 1430 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || |||||||| || || |||||||||||||||||||| || || ||||| ||| Sbjct 1429 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 1370 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || || || ||| || |||| ||||||| | || || || | ||||| ||| Sbjct 1369 TGGATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTC 1310 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || |||||||| || || || || ||||| Sbjct 1309 TTGCCCGTGAGGGTCTTGACGAAGATTTG 1281 >seq30 Length=10296 Score = 105 bits (116), Expect = 2e-17 Identities = 130/167 (78%), Gaps = 17/167 (10%) Strand=Plus/Plus Query 43096 TAGTCTCTGAACCTTTTCTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATCCTCAA- 43153 ||||||||||||||| |||| || | | |||||||||||||||||||||| |||| Sbjct 2174 TAGTCTCTGAACCTT--CTTCCCGTGAGGGAGCTTGGCTGCGGATTGTCCAATC-TCAAG 2230 Query 43154 CATTTTTACCATACCC-ACGCCATTACGCTTGGTGCAAC------TCTTTCG--AGAAGC 43204 | || ||||||||||| | | | ||| || ||||| || ||| | | || ||| Sbjct 2231 CGTTGTTACCATACCCGAGGTCGTTAACCT-GGTGCCACAACCCATCTCTGGGCAGCAGC 2289 Query 43205 GGTAG-TTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGTTGCC 43250 ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct 2290 GGTAGCTTGAG-CTCTAAGGAGTTTCCCGCAATTTGATTGTGTTGCC 2335 >seq19 Length=179986 Score = 105 bits (116), Expect = 2e-17 Identities = 130/167 (78%), Gaps = 17/167 (10%) Strand=Plus/Plus Query 43096 TAGTCTCTGAACCTTTTCTTCTTTCGAAGAA-CTTGGCTGCGGATTGTCCAATCCTCAA- 43153 ||||||||||||||| |||| || | | |||||||||||||||||||||| |||| Sbjct 174274 TAGTCTCTGAACCTT--CTTCCCGTGAGGGAGCTTGGCTGCGGATTGTCCAATC-TCAAG 174330 Query 43154 CATTTTTACCATACCC-ACGCCATTACGCTTGGTGCAAC------TCTTTCG--AGAAGC 43204 | || ||||||||||| | | | ||| || ||||| || ||| | | || ||| Sbjct 174331 CGTTGTTACCATACCCGAGGTCGTTAACCT-GGTGCCACAACCCATCTCTGGGCAGCAGC 174389 Query 43205 GGTAG-TTGAGGCTCTAAGGAGTTTCCCGCAATTTGAGGATGTTGCC 43250 ||||| ||||| ||||||||||||||||||||||||| ||||||| Sbjct 174390 GGTAGCTTGAG-CTCTAAGGAGTTTCCCGCAATTTGATTGTGTTGCC 174435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178920935382948