Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq40 122 1e-22
seq43 111 2e-19
>seq40
Length=667070
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | || ||||| |||| |||||||||||||| || ||
Sbjct 1469 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 1410
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | ||| | || ||||||||| ||| ||| ||||| |
Sbjct 1409 GATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTGACATT 1350
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | |||||||| |||||||| || || || ||
Sbjct 1349 GTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1290
Query 46582 AAAGATTTGCAT 46593
|||||||||||
Sbjct 1289 GAAGATTTGCAT 1278
>seq43
Length=605699
Score = 111 bits (122), Expect = 2e-19
Identities = 163/228 (71%), Gaps = 2/228 (1%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
||||| | | ||||||||||| |||||||| |||||| || || ||||||||||
Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| |||||| | || || |||||||| || || || || | ||||||||||| | ||
Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCAC 46545
| | |||||||| ||||| |||||| ||| | | | ||||| || || ||
Sbjct 450544 ATACCTTCCTTGTCTTGAATCTTGCTCTTGA-CGTTGTCAATGGTGTCTGATGACTCTAC 450602
Query 46546 ATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| | |||||||| || || ||||| || || || || ||||||||
Sbjct 450603 CTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Score = 107 bits (118), Expect = 2e-18
Identities = 141/193 (73%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| |||||||||||||| | || ||||| |||| || ||||||||||| || ||
Sbjct 450687 CTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 450746
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | || ||||||||| ||||| |||||| |||
Sbjct 450747 AATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGCTCTTGA-CGT 450805
Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580
| | | ||||| ||||| || || | || ||||| || || |||| || ||||
Sbjct 450806 TGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAA 450865
Query 46581 CAAAGATTTGCAT 46593
| || || |||||
Sbjct 450866 CGAAAATCTGCAT 450878
Score = 104 bits (114), Expect = 3e-17
Identities = 138/192 (72%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| || ||||||||||||| | |||||| | || || ||||||||||| || ||
Sbjct 451143 CTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTGCCAGCAAA 451202
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | |||||||| || | || | || |||||||||| ||||| |||||| |
Sbjct 451203 AATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACATT 451262
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | |||||||| || || || || || || ||
Sbjct 451263 GTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGAC 451322
Query 46582 AAAGATTTGCAT 46593
|||||| |||||
Sbjct 451323 AAAGATCTGCAT 451334
Score = 96.9 bits (106), Expect = 4e-15
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | || ||||| | || || |||||||| || |||||
Sbjct 451371 CTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAA 451430
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| ||||||||||| | || | | ||||||||| || ||| ||||| |
Sbjct 451431 AATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGAATTTTCGACTTGACATT 451490
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| ||||| || || | || ||||| ||||| || || || || ||
Sbjct 451491 GTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGAC 451550
Query 46582 AAAGAT 46587
||||||
Sbjct 451551 AAAGAT 451556
Score = 95.1 bits (104), Expect = 1e-14
Identities = 136/192 (71%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| |||||||| | | |||||| |||| || ||||||||||| || ||
Sbjct 450915 CTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 450974
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|| | ||||||||||| | || | | |||||||| |||||| |||||| |
Sbjct 450975 AATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTTGACATT 451034
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| || || || || | || ||||| || || |||| ||| || ||
Sbjct 451035 GTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGAC 451094
Query 46582 AAAGATTTGCAT 46593
|| ||||||||
Sbjct 451095 GAAAATTTGCAT 451106
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565238089118880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |