Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq23 250 2e-61 seq40 132 5e-26 seq43 100 3e-16 >seq23 Length=690853 Score = 250 bits (276), Expect = 2e-61 Identities = 377/532 (71%), Gaps = 13/532 (2%) Strand=Plus/Minus Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975 |||||||| | || ||||| || ||||| || || | || |||||||| || || || Sbjct 88922 CCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACCACGCTTC 88863 Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035 ||||||||||| |||| |||||| ||| || || |||| |||||||| || || ||| Sbjct 88862 TTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGCAGCAAAA 88803 Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095 ||||| || ||| | || || | || | | || ||||||||||| ||||| || Sbjct 88802 GCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGCAATCCAGCGCAGTGCCCAGTCT 88743 Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCC 133155 || |||| |||| |||||| || || ||||| || | || | || | | | || Sbjct 88742 GCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGA---GGTGCTGCCGTT-- 88688 Query 133156 GAG---GAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCT 133210 ||| | | | ||| || || |||||| || || | || ||||| | ||| | Sbjct 88687 GAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTTTT 88628 Query 133211 CCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGA 133270 || ||| || ||||| || ||||| || ||||| || || ||||| | | || Sbjct 88627 CCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGACTTCGTTGGAGA 88568 Query 133271 AACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGT 133330 ||||||||| || |||||| ||||| ||||| || |||||||| || || || || |||| Sbjct 88567 AACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAGAAAGCGAGGACGT 88508 Query 133331 GCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGG 133387 | |||||| ||| |||| |||||| | | |||||||||| || |||||||| Sbjct 88507 GGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGG 88448 Query 133388 ACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | ||||| | ||||||| ||||||| || || || || || ||||||||||| Sbjct 88447 AGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTACAT 88396 >seq40 Length=667070 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || ||||||||||| ||||||||| |||| |||||| || | Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362 |||| | | | | || ||||||| ||||| || || || |||||| ||||| Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCAT-CCCGCCTGACCA 1396 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| ||||| | || ||||| ||||| || |||| ||||| ||| |||||||| Sbjct 1397 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAA 1456 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || | || || ||| Sbjct 1457 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGT 1493 >seq43 Length=605699 Score = 100 bits (110), Expect = 3e-16 Identities = 155/218 (71%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || || |||||||| |||| || ||| | | Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || || | ||||| || || ||||| | |||| Sbjct 450590 GACACCATTGACAACG--TCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACC 450533 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || || || ||||| || || | ||||| | |||||||| Sbjct 450532 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACA 450473 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||| || ||||| | || |||| |||||| ||||| Sbjct 450472 ACATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGT 450435 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/218 (70%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || ||| | || || || ||||| || | || || ||| | | Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || |||| ||||| || || || || | |||| Sbjct 451046 GACACCATTGACAATG--TCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 450989 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||||| || ||||| ||||| || |||| ||||| | ||||||| Sbjct 450988 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACA 450929 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | || || || | ||||| ||| Sbjct 450928 ACATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGT 450891 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172524904960