Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq23 250 2e-61
seq40 132 5e-26
seq43 100 3e-16
>seq23
Length=690853
Score = 250 bits (276), Expect = 2e-61
Identities = 377/532 (71%), Gaps = 13/532 (2%)
Strand=Plus/Minus
Query 132916 CCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTT 132975
|||||||| | || ||||| || ||||| || || | || |||||||| || || ||
Sbjct 88922 CCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACCACGCTTC 88863
Query 132976 TTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAA 133035
||||||||||| |||| |||||| ||| || || |||| |||||||| || || |||
Sbjct 88862 TTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGCAGCAAAA 88803
Query 133036 GCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCG 133095
||||| || ||| | || || | || | | || ||||||||||| ||||| ||
Sbjct 88802 GCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGCAATCCAGCGCAGTGCCCAGTCT 88743
Query 133096 GCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACGGAGTTTCTCTTCC 133155
|| |||| |||| |||||| || || ||||| || | || | || | | | ||
Sbjct 88742 GCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGA---GGTGCTGCCGTT-- 88688
Query 133156 GAG---GAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCT 133210
||| | | | ||| || || |||||| || || | || ||||| | ||| |
Sbjct 88687 GAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTTTT 88628
Query 133211 CCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGA 133270
|| ||| || ||||| || ||||| || ||||| || || ||||| | | ||
Sbjct 88627 CCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGACTTCGTTGGAGA 88568
Query 133271 AACGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGT 133330
||||||||| || |||||| ||||| ||||| || |||||||| || || || || ||||
Sbjct 88567 AACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAGAAAGCGAGGACGT 88508
Query 133331 GCTTGATGAAATGGCGCTCGTTGTCGTT---CAAGCGCTCCCAGTCGCGCGTGTCCTTGG 133387
| |||||| ||| |||| |||||| | | |||||||||| || ||||||||
Sbjct 88507 GGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGG 88448
Query 133388 ACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439
| ||||| | ||||||| ||||||| || || || || || |||||||||||
Sbjct 88447 AGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTACAT 88396
>seq40
Length=667070
Score = 132 bits (146), Expect = 5e-26
Identities = 161/217 (74%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || ||||||||||| ||||||||| |||| |||||| || |
Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACCA 38362
|||| | | | | || ||||||| ||||| || || || |||||| |||||
Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCAT-CCCGCCTGACCA 1396
Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422
||||| ||||| | || ||||| ||||| || |||| ||||| ||| ||||||||
Sbjct 1397 GCAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAA 1456
Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||||| ||||| |||| || || | || || |||
Sbjct 1457 CATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGT 1493
>seq43
Length=605699
Score = 100 bits (110), Expect = 3e-16
Identities = 155/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || || || || || || |||||||| |||| || ||| | |
Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | |||| | |||| || || | ||||| || || ||||| | ||||
Sbjct 450590 GACACCATTGACAACG--TCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACC 450533
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||| | || || || ||||| || || | ||||| | ||||||||
Sbjct 450532 AGCAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACA 450473
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
|||| || ||||| | || |||| |||||| |||||
Sbjct 450472 ACATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGT 450435
Score = 91.5 bits (100), Expect = 1e-13
Identities = 153/218 (70%), Gaps = 4/218 (2%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
|||||||| ||||| || ||| | || || || ||||| || | || || ||| | |
Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047
Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361
|||| | | | || | | |||| || |||| ||||| || || || || | ||||
Sbjct 451046 GACACCATTGACAATG--TCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACC 450989
Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421
| ||||| ||||||| || ||||| ||||| || |||| ||||| | |||||||
Sbjct 450988 AGCAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACA 450929
Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459
||||||| ||||| | || || || | ||||| |||
Sbjct 450928 ACATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGT 450891
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500172524904960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |