Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_014637.1
Length=617453
Score E
Sequences producing significant alignments: (Bits) Value
seq24 123 1e-22
seq43 114 5e-20
>seq24
Length=98465
Score = 123 bits (136), Expect = 1e-22
Identities = 246/363 (68%), Gaps = 5/363 (1%)
Strand=Plus/Minus
Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303
|| || ||||| || || ||||| ||||| || ||| || || || ||| ||| |
Sbjct 57466 CCCGAGGAAATCTCTTCAATGGTCCTTACAAAGATGCGTGAGACTGCTGAAGCATACCTC 57407
Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363
||| | || || | || || | |||||||| || || ||||| || | || ||
Sbjct 57406 GGTACCAAGGTAACGAACGCTGTTGTCACTGTTCCTGCCTACTTCAACGACTCCCAGCGT 57347
Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423
|||||||| || ||||| || | ||||| ||| | |||||| | ||||| || || ||
Sbjct 57346 CAAGCAACCAAGGATGCCGGTCTCATTGCCGGTATGAATGTTTTGCGAATCATCAACGAG 57287
Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaa-aaaa 451482
||||| || |||||| | ||||| || || | | ||| ||||||| | ||||
Sbjct 57286 CCTACTGCTGCTGCTATTGCATACGGTCTCGACAGG----AAGGGACAGAAGGAGCAAAA 57231
Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542
| | | || ||||| ||||| || || |||| || | || | ||||||||
Sbjct 57230 CGTGCTCATCTTCGATTTGGGTGGTGGTACCTTTGATGTATCGCTCCTCACCATTGAAGA 57171
Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602
||| | ||||| || ||| | || ||||| || ||||| || |||||||| ||||
Sbjct 57170 TGGCATCTTTGAGGTCAAGTCTACTGCCGGTGACACACATCTCGGTGGTGAAGACTTTGA 57111
Query 451603 TAA 451605
||
Sbjct 57110 CAA 57108
>seq43
Length=605699
Score = 114 bits (126), Expect = 5e-20
Identities = 144/198 (73%), Gaps = 0/198 (0%)
Strand=Plus/Minus
Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115
|| || || || ||||| ||||| || || ||||| ||||| |||||||| || || | |
Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497
Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175
||||| | | || |||||||| || |||||||| ||||| || || || || |||
Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437
Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235
|| |||||| | || || || ||||||||||| | || | || || || || || |
Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377
Query 391236 AAGGATGCAACACTTCAC 391253
||||| |||| || |||
Sbjct 451376 AAGGAGTCAACTCTCCAC 451359
Score = 102 bits (112), Expect = 3e-16
Identities = 145/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109
||| | ||||||||||| || ||||||| || || ||||| || || || ||||||||
Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819
Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169
|| | |||||| | || || |||||||| ||||| || ||||| ||||| ||
Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759
Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229
|| ||| | ||||| | || || || ||||| || || | || | || || || |||
Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699
Query 391230 ATTGATAAGGATGCAACACTTCAC 391253
|| | ||||| |||| || |||
Sbjct 450698 ATCCAGAAGGAGTCAACTCTCCAC 450675
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1975717286188752
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |