Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq24 123 1e-22 seq43 114 5e-20 >seq24 Length=98465 Score = 123 bits (136), Expect = 1e-22 Identities = 246/363 (68%), Gaps = 5/363 (1%) Strand=Plus/Minus Query 451244 CCTGAAGAAATTTCATCTATGGTTCTTACTAAAATGAAAGAAACAGCAGAACAATATATT 451303 || || ||||| || || ||||| ||||| || ||| || || || ||| ||| | Sbjct 57466 CCCGAGGAAATCTCTTCAATGGTCCTTACAAAGATGCGTGAGACTGCTGAAGCATACCTC 57407 Query 451304 GGTTCTCCAGTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGG 451363 ||| | || || | || || | |||||||| || || ||||| || | || || Sbjct 57406 GGTACCAAGGTAACGAACGCTGTTGTCACTGTTCCTGCCTACTTCAACGACTCCCAGCGT 57347 Query 451364 CAAGCAACTAAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAA 451423 |||||||| || ||||| || | ||||| ||| | |||||| | ||||| || || || Sbjct 57346 CAAGCAACCAAGGATGCCGGTCTCATTGCCGGTATGAATGTTTTGCGAATCATCAACGAG 57287 Query 451424 CCTACAGCAGCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaa-aaaa 451482 ||||| || |||||| | ||||| || || | | ||| ||||||| | |||| Sbjct 57286 CCTACTGCTGCTGCTATTGCATACGGTCTCGACAGG----AAGGGACAGAAGGAGCAAAA 57231 Query 451483 TATTTTAGTATTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGA 451542 | | | || ||||| ||||| || || |||| || | || | |||||||| Sbjct 57230 CGTGCTCATCTTCGATTTGGGTGGTGGTACCTTTGATGTATCGCTCCTCACCATTGAAGA 57171 Query 451543 TGGGGTATTTGAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGA 451602 ||| | ||||| || ||| | || ||||| || ||||| || |||||||| |||| Sbjct 57170 TGGCATCTTTGAGGTCAAGTCTACTGCCGGTGACACACATCTCGGTGGTGAAGACTTTGA 57111 Query 451603 TAA 451605 || Sbjct 57110 CAA 57108 >seq43 Length=605699 Score = 114 bits (126), Expect = 5e-20 Identities = 144/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 391056 ATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCTGATAAC 391115 || || || || ||||| ||||| || || ||||| ||||| |||||||| || || | | Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497 Query 391116 ATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAACAACGT 391175 ||||| | | || |||||||| || |||||||| ||||| || || || || ||| Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437 Query 391176 TTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAATATTGAT 391235 || |||||| | || || || ||||||||||| | || | || || || || || | Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377 Query 391236 AAGGATGCAACACTTCAC 391253 ||||| |||| || ||| Sbjct 451376 AAGGAGTCAACTCTCCAC 451359 Score = 102 bits (112), Expect = 3e-16 Identities = 145/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 391050 ATGAATATTTTCGTTAAAACACTGACTGGTAAAACTATTACTCTTGATGTTGAATCATCT 391109 ||| | ||||||||||| || ||||||| || || ||||| || || || |||||||| Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 391110 GATAACATTGAAGCTATTAAACAAAAAATTCAAGATAAGGAAGGAATTCCTCCTGATCAA 391169 || | |||||| | || || |||||||| ||||| || ||||| ||||| || Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759 Query 391170 CAACGTTTAATTTTCTCAGGGAAACAACTTGAAGATGGAAGAACTTTGGCGGATTATAAT 391229 || ||| | ||||| | || || || ||||| || || | || | || || || ||| Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699 Query 391230 ATTGATAAGGATGCAACACTTCAC 391253 || | ||||| |||| || ||| Sbjct 450698 ATCCAGAAGGAGTCAACTCTCCAC 450675 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975717286188752