Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq24 199 3e-45 seq3 114 1e-19 >seq24 Length=98465 Score = 199 bits (220), Expect = 3e-45 Identities = 925/1451 (64%), Gaps = 18/1451 (1%) Strand=Plus/Plus Query 517214 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 517273 || ||||| ||| || |||| ||| ||| || |||| ||||| | || || Sbjct 56298 TTGGTAATGACAATGTTGTTGGTCTTGCCCGTTCCCTTTTCAGTGGCAGAAATGTTGAGG 56357 Query 517274 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 517333 || |||||||||| ||||||||| || ||||| || || || || | |||||||| Sbjct 56358 ATCGAGTTGGCATCCACATCAAATGTCACCTCAATCTGTGGAACACCACGAGGAGCAGGT 56417 Query 517334 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 517393 || || || ||| | ||| | || || || || || || | || ||| Sbjct 56418 GGAATACCAGTCAAGTCAAACTTGCCGAGCAAGTTGCAGTCCTTGGTACGTGCACGCTCA 56477 Query 517394 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 517453 || || || | || || || ||| || || || || || | ||| ||| Sbjct 56478 CCTTCAAACACCTGAATCAACACACCAGGCTGGTTGTCGCTGTAGGTAGAAAAGG-TCTC 56536 Query 517454 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCTGC 517512 || || || |||||| || ||||| | ||| | ||||| | |||||| || Sbjct 56537 CGACTTCTTTGTAGGAATCGTCGTGTTGCGTGTAATGAGGGGTGTCATCACACCACCGGC 56596 Query 517513 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 517572 || || | ||| | ||| || || | ||||| | | || | | || ||||| Sbjct 56597 AGTCTCAATACCCATAGAGAGTGGTGCAACATCGAGCAAGAGCAAGTCCTGGGTCTTTTC 56656 Query 517573 ATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 517631 ||| | ||| |||| |||||| ||||| | |||||||| ||||||||||| |||| Sbjct 56657 TGAAGTGTCGCCAGACAA-AATAGCAGCTTGGACGGCAGCACCGTATGCAACAGCCTCAT 56715 Query 517632 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT- 517690 |||| || | || | || || | || || ||||| || | || | ||| | ||| Sbjct 56716 CAGGGTTGATGGTCTTGTTGAGCTCCTTGCCGTTGAAGAAGTCAGAGACAAGCT-TCTGG 56774 Query 517691 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 517750 || || ||||| | ||||| ||||| | ||||| |||| ||| || || ||| Sbjct 56775 ACACGTGGGATACGGGTCGATCCACCAACAAGCACAATCTCATCCACACTCGACTTGTCC 56834 Query 517751 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAA--GACCCGCTCTAAACAAGTCTG 517808 | || | ||| || || || ||||| || || | | |||| |||||||||| Sbjct 56835 ATCTTGGCATCACGCAACACCTTCTCAACAGGCTCCATGGTACCGCGG--AACAAGTCTG 56892 Query 517809 AACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACA 517868 |||||| || ||||| | || | |||| || | | | || |||| || || | Sbjct 56893 CACAAAGCTCCTCGAACCTGGCACGCGTAATGCTGGTGTAAAAGTCGGTTCCCTCAAAGA 56952 Query 517869 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCAC 517928 || |||| ||||||| || || | ||| || || |||| ||| || ||||| || | Sbjct 56953 GCGAGTCAATCTCAATCGATGTCTGTGCCGATGAGGAAAGTGTACGCTTGGCACGCTCGC 57012 Query 517929 ATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTC 517988 | || || | | | || | || || | | ||||||| | || | || | Sbjct 57013 AAGCAGTACGCAAACGACGCAGAGCACGAGCATTTGTAGTCAAATCCTTCTTGAACTTGC 57072 Query 517989 TCTTGAAATCT-TCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAAT 518047 |||||| || | | | | ||| || ||||| || ||||| |||||||| || | Sbjct 57073 GCTTGAACTCAGTGCAGA-AGTGTGTAACGAGACGGTTGTCAAAGTCTTCACCACCGAGA 57131 Query 518048 TTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTT 518107 | || | || | |||| | || | || | |||||||||| | | || | | Sbjct 57132 TGTGTGTCACCGGCAGTAGACTTGACCTCAAAGATGCCATCTTCAATGGTGAGGAGCGAT 57191 Query 518108 ACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTT 518167 |||||| ||| |||||||||| ||| || || || || || || || | | || Sbjct 57192 ACATCAAAGGTACCACCACCCAAATCGAAGATGAGCACGTTTTGCTCCTTCTGTCCCTTC 57251 Query 518168 TTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTA 518227 | || ||||| || |||| |||||||||||| || || || || |||| ||||||||| Sbjct 57252 CTGTCGAGACCGTATGCAATAGCAGCAGCAGTAGGCTCGTTGATGATTCGCAAAACATTC 57311 Query 518228 AGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCA 518287 | ||| ||||| || ||||| || || ||||| | || || ||||| || || ||| Sbjct 57312 ATACCGGCAATGAGACCGGCATCCTTGGTTGCTTGACGCTGGGAGTCGTTGAAGTAGGCA 57371 Query 518288 GGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATATAAGCGCTTGCCGTTTGTTTC 518347 |||||||| | ||| || | ||||| | |||| | || || || || | | Sbjct 57372 GGAACAGTGACAACAGCGTTCGTTACCTTGGTACCGAGGTATGCTTCAGCAGTCTCACGC 57431 Query 518348 ATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGAATATTGCTTGGATTCA-TTTTG 518406 || || | | | |||||| || |||| || || | ||| ||| ||| ||| Sbjct 57432 ATCTTTGTAAGGACCATTGAAGAGATTTCCTCGGGTGTGAATTCCTTCTTCTCACCCTTG 57491 Query 518407 ATATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAGTATTT 518466 | | || || | ||||| | | || || || |||||||||| || Sbjct 57492 A-ACTCCACCTCGATGACGGGTTTTGATGCCTTGTCGATGACCTTGAATGGCCAGTGCTT 57550 Query 518467 CATATCTGATTGAACACTTTG--GTCATTAAAATCTCTACCAATTAATCGTTTTGCATCA 518524 ||| |||| ||| ||| | | ||| ||| | | ||||| | || || ||||| Sbjct 57551 CATGTCTGCTTG--CACCTCGCTGTCTGCAAAGTTGCGGCCAATGAGACGCTTCGCATCG 57608 Query 518525 AAAATAGTATTGGTTGGATTAATTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGT 518584 || | || ||| ||| || || || |||| | ||||| ||||| ||||||| Sbjct 57609 AAGACTGTGTTGTGTGGGTTCATGGCGACTTGGTTCTTGGCGGCATCACCAATCAACCTC 57668 Query 518585 TCTGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATA 518644 || || || | || | || || || || ||||| || || || || |||||||| || Sbjct 57669 TCGGTATCGTTGAAAGCGACGTACGACGGTGTTGTACGGTTTCCCTGGTCATTCGCGATG 57728 Query 518645 ATTTCAACTTT 518655 || || || || Sbjct 57729 ATGTCGACGTT 57739 >seq3 Length=560494 Score = 114 bits (126), Expect = 1e-19 Identities = 254/380 (67%), Gaps = 6/380 (2%) Strand=Plus/Plus Query 517259 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 517318 |||||||| || || | |||||| |||| | ||||| || || ||||| ||||| || Sbjct 199050 GCAGTCACCTTGAGGACACCATTCTCATCAATCTCAAAGGTCACCTCAATCTGAGGCACA 199109 Query 517319 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 517378 || | ||||||||||||| || ||| | || | || || || || | || Sbjct 199110 CCACGAGGAGCAGGTGGGATACCAGTCAAGTCGAACTTACCAAGCAAGTTGTTGGCCTTG 199169 Query 517379 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 517438 || || ||| ||||| || || | ||| || | ||| | || ||| || || || Sbjct 199170 GTCAAGGATCGCTCACCTTCAAACACTTGAATGGAAACAATAGCTTGGTTGTCGGACGCC 199229 Query 517439 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 517498 |||| || | | || || || || || ||||| | | |||| | |||||| Sbjct 199230 GTTGAGAAGATTTGAGACTTCTTTGTTGGGATGACGGTGTTGCGACCAATCAACTTGGTC 199289 Query 517499 ATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 517558 || | |||||||| ||| || | |||||||| || || |||||||||| || | | | Sbjct 199290 ATGACACCACCTGTTGTCTCAATACCAAGAGTGAGTGGGTTGACATCAACGAGCAAGACA 199349 Query 517559 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 517618 | |||| ||| ||| | ||||| | || | || | |||||||||||| Sbjct 199350 TCCTGAACACCTTCCTCA-----CGCGACAAG-ACGGCACCCTGCACAGCAGCACCATAG 199403 Query 517619 GCAACAGCTTCATCAGGATT 517638 ||||||||||||||||| || Sbjct 199404 GCAACAGCTTCATCAGGGTT 199423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780820216575064