Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq24 426 2e-114 seq5 210 3e-49 seq3 181 1e-40 >seq24 Length=98465 Score = 426 bits (472), Expect = 2e-114 Identities = 1052/1586 (66%), Gaps = 20/1586 (1%) Strand=Plus/Plus Query 6572 TCTTCATCTTTATACTTTTCCGCATCTTGGACCATCTTTTCAATGTCTTCTTTCGATAAT 6631 || ||||| ||||||||| || || |||||| ||||| || || || || || Sbjct 56226 TCCTCATCAGCATACTTTTCAGCCTCAGAGACCATGCGCTCAATCTCCTCCTTGGACAAA 56285 Query 6632 CTCCCCTTATCATTCGTAATCGTAATCTTTTCGGATTTACCCGAGGCCTTATCTTCAGCA 6691 | ||||| || || ||||| ||| || | || || |||| |||| || ||| Sbjct 56286 CGTCCCTTGTCGTTGGTAATGACAATGTTGTTGGTCTTGCCCGTTCCCTTTTCAGTGGCA 56345 Query 6692 CTTACATTCAAAATACCATTTGCATCAACATCGAACCTTACATTAATTTGTGGTGTACCC 6751 | || | || || ||||| ||||| || | || | ||| ||||| ||| Sbjct 56346 GAAATGTTGAGGATCGAGTTGGCATCCACATCAAATGTCACCTCAATCTGTGGAACACCA 56405 Query 6752 CTCGGTGCGGCTGGAATACCCGTTAAATCAAATGTACCAAGTAAACTGTTATCCGTCGCC 6811 | || || | ||||||||| || || ||||| | || || || || ||| | | Sbjct 56406 CGAGGAGCAGGTGGAATACCAGTCAAGTCAAACTTGCCGAGCAAGTTGCAGTCCTTGG-- 56463 Query 6812 TTCTT--ACGTTCACCTTCATAGACTTTAATTGTCACCGCAGGTTGATTATCT-TGTGCC 6868 | | | ||| ||||||||| | || | ||| ||| |||| || || || ||| Sbjct 56464 TACGTGCACGCTCACCTTCAAACACCTGAATCAACACACCAGGCTGGTTGTCGCTGTAG- 56522 Query 6869 GTTGAGAAGATTTGTTCTTTCTTAGATGGAATCGTCGTATTTCTCGGAATAACCGGGGTC 6928 || || ||| | | ||||| | ||||||||||| || | | ||| | || ||| Sbjct 56523 GTAGAAAAGGTCTCCGACTTCTTTGTAGGAATCGTCGTGTTGCGTGTAATGAGGGGTGTC 56582 Query 6929 ATAATACCACCCATAGTTTCGAGTCCAAGAGACAGAGGTGTCACGTC---CAAGAGTAAC 6985 || | |||||| ||| || | || | ||| || |||| || || |||||| || Sbjct 56583 ATCACACCACCGGCAGTCTCAATACCCATAGAGAGTGGTGCAACATCGAGCAAGAGCAA- 56641 Query 6986 AGGTCTTGAACAGATTCGTTCCCTTCACCCGTTAAGATGGCGGCTTGGACCGTCGCCCCG 7045 ||| || ||| || || | || || || |||||||| | || ||| Sbjct 56642 --GTCCTGGGTCTTTTCTGAAGTGTCGCCAGACAAAATAGCAGCTTGGACGGCAGCACCG 56699 Query 7046 TATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGTTCTTTACCGTTAAAATAATCC 7105 ||||| || |||||||| ||||| || || || || || || || ||||| || | || Sbjct 56700 TATGCAACAGCCTCATCAGGGTTGATGGTCTTGTTGAGCTCCTTGCCGTTGAAGAAGTCA 56759 Query 7106 GATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCACCGACCAAAACGATTTCATTC 7165 || | | | || | ||||| || ||||||||||| || | || || |||| | Sbjct 56760 GAGACAAGCTTCTGGACACGTGGGATACGGGTCGATCCACCAACAAGCACAATCTCATCC 56819 Query 7166 ACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTTTCGACAGGTTCCATACATTTA 7225 || |||| || || ||||| | || || | || || ||||| ||||| Sbjct 56820 ACACTCGACTTGTCCATCTTGGCATCACGCAACACCTTCTCAACAGGCTCCATGGTACCG 56879 Query 7226 CGGAACAAGTCCATACACAGTTCCTCAAAACGTGCACGGGTAATGGATGTATAGAAATCA 7285 ||||||||||| ||| || ||||| || | ||||| |||||| || || || || Sbjct 56880 CGGAACAAGTCTGCACAAAGCTCCTCGAACCTGGCACGCGTAATGCTGGTGTAAAAGTCG 56939 Query 7286 ACGCCGTCGTATAACGAATCAATTTCAATGGTTGTTTGTGCCGTCGAAGATAACGTTCGC 7345 || || | | ||| ||||| ||||| | ||| ||||||| || || | || ||| Sbjct 56940 GTTCCCTCAAAGAGCGAGTCAATCTCAATCGATGTCTGTGCCGATGAGGAAAGTGTACGC 56999 Query 7346 TTTGCGCGCTCACACGCCGTTCGTAAACGACGAAGGGCACGCGGGTTACCGGAAATATCT 7405 || || ||||| || || || || |||||||| || ||||| | || | | ||| Sbjct 57000 TTGGCACGCTCGCAAGCAGTACGCAAACGACGCAGAGCACGAGCATTTGTAGTCAAATCC 57059 Query 7406 TTCTTATGTTTACGTTTAAACTCTTCAGAGAAGTGTCGAAGGAGTCTCGAATCGAAATCT 7465 ||||| || || || ||||| |||||||| || ||| | || || ||| Sbjct 57060 TTCTTGAACTTGCGCTTGAACTCAGTGCAGAAGTGTGTAACGAGACGGTTGTCAAAGTCT 57119 Query 7466 TCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCTCCTTCAATG 7525 |||||||| | ||||| || || || || | ||||| |||||||| || |||||||| Sbjct 57120 TCACCACCGAGATGTGTGTCACCGGCAGTAGACTTGACCTCAAAGATGCCATCTTCAATG 57179 Query 7526 TTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACGTTCGTATCG 7585 | | | ||| |||||||| ||||||||||||| || || ||||| ||||| || Sbjct 57180 GTGAGGAGCGATACATCAAAGGTACCACCACCCAAATCGAAGATGAGCACGTTTTGCTCC 57239 Query 7586 TCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCATTAATAATA 7645 | | | ||| | ||||||||||| || ||||| || || || || || || || || Sbjct 57240 TTCTGTCCCTTCCTGTCGAGACCGTATGCAATAGCAGCAGCAGTAGGCTCGTTGATGATT 57299 Query 7646 CG-AAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGTTGCGAATC 7704 || || ||| |||| || ||||| | ||||| || || ||||| || || || || Sbjct 57300 CGCAAAACA-TTCATACCGGCAATGAGACCGGCATCCTTGGTTGCTTGACGCTGGGAGTC 57358 Query 7705 GTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGATACGATTC 7764 ||| |||||||| || || || || || |||| ||| || || ||||||| || | ||| Sbjct 57359 GTTGAAGTAGGCAGGAACAGTGACAACAGCGTTCGTTACCTTGGTACCGAGGTATGCTTC 57418 Query 7765 CGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCAAACTGTTT 7824 || | || ||| || ||||| ||||| || || || || || | | || | || Sbjct 57419 AGCAGTCTCACGCATCTTTGTAAGGACCATTGAAGAGATTTCCTCGGGTGTGAATTCCTT 57478 Query 7825 CGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGGATAACCTT 7884 | | ||||| || || || || || || | |||||| | || | ||| ||||| Sbjct 57479 CTTCTCACCCTTGAACTCCACCTCGATGACGGGTTT---TGATGCCTTGTCGATGACCTT 57535 Query 7885 ATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTTCCGATAAG 7944 | | ||| | ||||| || |||| |||| ||| | ||| || | || || || Sbjct 57536 GAATGGCCAGTGCTTCATGTCTGCTTGCACCTCGCTGTCTGCAAAGTTGCGGCCAATGAG 57595 Query 7945 ACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTCGCCGCGTC 8004 |||||| ||||| || |||||||| | ||||||||||| ||||||||| || || || Sbjct 57596 ACGCTTCGCATCGAAGACTGTGTTGTGTGGGTTCATGGCGACTTGGTTCTTGGCGGCATC 57655 Query 8005 CCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTTCGATTCCC 8064 || || | | || || || | || ||||||||||| || || || || || || Sbjct 57656 ACCAATCAACCTCTCGGTA---TCGTTGAAAGCGACGTACGACGGTGTTGTACGGTTTCC 57712 Query 8065 TTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGCCGACGCACGAATACGT 8124 ||||| ||||| || || || ||| || | ||| ||| | |||| || || || || Sbjct 57713 CTGGTCATTCGCGATGATGTCGACGTTGTTATGTTGGAAGATGGCGACACATGAGTATGT 57772 Query 8125 TGTTCCTAAATCAATACCGATTGCTT 8150 || || | ||| || ||||| |||| Sbjct 57773 AGTGCCGAGATCGATTCCGATGGCTT 57798 >seq5 Length=451031 Score = 210 bits (232), Expect = 3e-49 Identities = 689/1058 (65%), Gaps = 27/1058 (3%) Strand=Plus/Minus Query 7025 GCGGCTTGGACCGTCGCCCCGTATGCGACCGCCTCATCGGGGTTAATCGTTTTATTCAGT 7084 ||||| ||||| | || ||||| || || |||||||||||||| || | || || Sbjct 85039 GCGGCCTGGACGGCAGCACCGTAAGCAACAGCCTCATCGGGGTTGATGGACTTGTTGCAC 84980 Query 7085 TCTTTACCGTTAAAATAATCCGATAACATTTGTTGAATTTTCGGGATTCGTGTCGATCCA 7144 || || ||| ||| | || || | | | || ||||| ||||| || || |||||| Sbjct 84979 TCCTTGCCG---AAAAAGTCAGACACGAGCTTCTGGATTTTGGGGATACGGGTAGATCCA 84923 Query 7145 CCGACCAAAACGATTTCATTCACTTTCGATTTATCGATCTTTGAGTCTCGAAGTGTTTTT 7204 || || | || || || | ||| || || || || ||||| ||||| || || || Sbjct 84922 CCCACGAGGACAATATCGTCCACCTTGGACTTGTCAATCTTGGAGTCCCGGAGAACCTTC 84863 Query 7205 TCGACAGGTTCCAT-----ACATTTACGGAACAAGTCCATACACAGTTCCTCAAAACGTG 7259 || ||||| || || || || | || | || | | || ||| |||| ||||| | Sbjct 84862 TCAACAGGGTCAATGGTCGAC-TTGAAGGTAGCAG--CGTTCA-AGT-CCTCGAAACGAG 84808 Query 7260 CACGGGTAATGGATGTATAGAAATCAACGCCGTCGTATAACGAATCAATTTCAATGGTTG 7319 |||| |||||| | | || || || | | | | ||| ||||| |||| || | Sbjct 84807 CACGAGTAATGTTGGCGGAAAAGTCGGTTCCCTGGAAGAGCGAGTCAATCTCAACAGTGG 84748 Query 7320 TTTGTGCCGTCGAAGATAACGTTCGCTTTGCGCGCTCACACGCCGTTCGTAAACGACGAA 7379 | |||| | || || | || ||||| || ||||| || || | | | |||||||| Sbjct 84747 TCTGTGTCACAGACGAGAGAGTACGCTTGGCACGCTCGCAAGCAGACCTGAGACGACGAA 84688 Query 7380 GGGCACGCGGGTTACCGGAAATATCTTTCTTATGTTTACGTTTAAACTCTTCAGAGAAGT 7439 | ||||| |||| ||||||| || | ||| || || || || | ||||| Sbjct 84687 GTGCACGTGGGTCGTCGGAAATGTCGTGCTTGGACTTGCGGAGGAATTCAGCCTTGAAGT 84628 Query 7440 G-TCGAAGGAG-TCTCGAATCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGC 7497 | |||| || | | | || || || |||||||| | || || || || || || || Sbjct 84627 GCTCGAGCAAGGTGTTG--TCAAAGTCCTCACCACCGAGATGAGTGTCTCCGGCAGTGGC 84570 Query 7498 TTTGACTTCAAAGATACCTCCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACC 7557 || || | |||| ||| || | ||| | | | || ||||| || |||||||| || Sbjct 84569 CTTAACCTGGAAGACACCACCCTGGATGGTCAGGATGGACACATCGAAAGTACCACCTCC 84510 Query 7558 CAGGTCAAAAATGAGTACGTTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGAT 7617 ||||| |||||||| || ||| | || | ||| || ||||||||||| || || Sbjct 84509 GAGGTCGAAAATGAGAACATTCTTCTCCTTCTCTGAACGCTGGTCGAGACCGTAAGCAAT 84450 Query 7618 AGCCGCCGCCGTTGGTTCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGC 7677 || || || ||||| || || || ||||| || ||| || || ||||| | | || Sbjct 84449 GGCGGCGGCAGTTGGCTCGTTGATGATACGGAGGACGTTGAGTCCGGCAATGGCACCGGC 84390 Query 7678 ATCTTTCGTCGCTTGTCGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTC 7737 ||| || || || || || || ||| ||||||||| || || || | || || | Sbjct 84389 ATCCTTGGTGGCGGTACGCTGAGAGTCGGAAAAGTAGGCAGGCACAGTAATAACGGCCTT 84330 Query 7738 CGTGACTTTCTTACCGAGATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGA 7797 | || ||||| ||| | | || || || || ||||| ||| || ||||| | Sbjct 84329 CTCAACCTTCTTGTTGAGCTTGGTCTCTGCAATCTCCTTCATCTTGACGAGGACCATGGC 84270 Query 7798 TGAAATCTCTTCAGCCGCAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGG 7857 || ||||| | || | || || ||| | |||||| | || || ||||| || Sbjct 84269 AGAGATCTCCTGAGGTGTGAATTGCTTCTTCTCACCGAGGTACTCGACCTCAATTTGAGG 84210 Query 7858 TTTATCCGCAGCACCGGGGATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTG 7917 | | | | ||| | | || || | | ||| | ||| | || | | ||||| Sbjct 84209 CTGACCATCGGCATC---CACGACATTGAAAGGCCAGACCTTCTTGTCTGCCTTGACCTC 84153 Query 7918 TTGGTC--CGAAAACTTTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGG 7975 | ||| || || | || ||||| |||||||| || || || ||||| ||| Sbjct 84152 TGCGTCATCGTAA--CGACGGCCAATAAGGCGCTTTGCGTCGAATACGGTGTTGCGAGGG 84095 Query 7976 TTCATGGCTGTTTGGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAAC 8035 ||||| || | |||||||| |||| ||| || | ||||| || | | || ||||| Sbjct 84094 TTCATAGCGGCCTGGTTCTTGGCCGAGTCTCCAACGAGACGCTCTTCA---TCTGTAAAA 84038 Query 8036 GCGACGTACGATGGGGTCGTTCGATTCCCTTGGTCGTT 8073 |||||||| || ||||| || || || |||||||| Sbjct 84037 GCGACGTATGAAGGGGTTGTACGGGCACCCTGGTCGTT 84000 >seq3 Length=560494 Score = 181 bits (200), Expect = 1e-40 Identities = 458/688 (67%), Gaps = 25/688 (4%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 || || ||||||||||| | ||| || || || | ||| || ||||||||| | |||| Sbjct 199812 TCAAAGTCTTCACCACCGAGGTGGGTGTCACCGGAGGTTGCAAGGACTTCAAACACACCT 199871 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 |||||||| | | || |||||||| ||||||||||| || ||| | | || | Sbjct 199872 TCTTCAATGGAGAGGAGGGAGACATCAAAGGTACCACCACCGAGATCATACACGATAATC 199931 Query 7577 TT-CGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTC 7635 || ||| || || ||||| ||||| || || || || || |||||||| ||||| Sbjct 199932 TTGCGT----TCATCACCCTTCTTGTCGAGTCCATAGGCAATGGCAGCCGCCGTGGGTTC 199987 Query 7636 ATTAATAATACGAA-GACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTC 7694 ||| | ||| |||| |||| || || || | || || | ||||| || || ||||| | Sbjct 199988 ATTGACAATTCGAATGACA-TTGAGACCCGAGATGGTACCGGCATCCTTGGTGGCTTGCC 200046 Query 7695 GTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGA 7754 ||| | |||||| ||||||||||| || || || || || | || || | || | Sbjct 200047 TTTGAGCATCGTTGAAGTAGGCCGGCACTGTCACCACAGCATGGGTCACGGCGTGTCCCA 200106 Query 7755 GATACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCG 7814 | | || || || | || ||||| || || ||||| | ||||||||||| | | Sbjct 200107 AAAAGGACTCTGCCGTTTCCTTCATCTTACCGAGCACCATGGCGGAAATCTCTTCGGGTG 200166 Query 7815 CAAACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGG 7874 || || | | || || || | | ||||| | |||| || | |||| Sbjct 200167 TGAATTGACGCTTCTCGCCCTTCACCTTGACTTCGACACTGGG-----ACG-ACCACCTT 200220 Query 7875 GGATAACC---TTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACT 7931 | | ||| | | | | | |||||||| | ||| || | | ||| ||| Sbjct 200221 TGTTGACCATGGTGAAGGGAAGACCCTTCATATCCTTTTGCACTTCCTTGTCTTCAAAGG 200280 Query 7932 TTCTTCCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTG---TTT 7988 | | || || | ||| || || ||| | || ||||||| |||| | |||| || Sbjct 200281 TACGACCAATGAAACGTTTCGCGTCATACACGGTGTTTTCTGGGT---TTGCTGAGAATT 200337 Query 7989 GGTTCTTCGCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATG 8048 ||||||| || || || |||| ||||||||||| | || || || ||||| | || | Sbjct 200338 GGTTCTTGGCGGCATCACCGACAAGACGTTCATCA---TCGGTGAAGGCGACCCAGGAGG 200394 Query 8049 GGGTCGTTCGATTCCCTTGGTCGTTCGCAATAATTTCTACGCGGTCGTTTTGCCAGACGC 8108 | || | || || ||||||||||| || || |||| || || || |||| |||| Sbjct 200395 GTGTGATACGGTTACCTTGGTCGTTGGCGATGATTTGGACTCGTCCGCCTTGCATCACGC 200454 Query 8109 CGACGCACGAATACGTTGTTCCTAAATC 8136 |||| ||||| || |||||||| | ||| Sbjct 200455 CGACACACGAGTAGGTTGTTCCGAGATC 200482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132450676960