Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq43 277 2e-69 seq23 141 1e-28 seq11 123 3e-23 seq2 114 2e-20 >seq43 Length=605699 Score = 277 bits (306), Expect = 2e-69 Identities = 978/1508 (65%), Gaps = 51/1508 (3%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| ||||| | || || ||||| || || ||||| | Sbjct 33223 CCGCAGCACATGATCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAGGCC 33282 Query 111672 TTGGAGACATACGACAAGATGTCC-CGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| || ||||| | | | |||| |||||| | || |||||||| Sbjct 33283 ATTGAGACATACAACCTCATGTCTTCCAAGCAC-TTCACACACGCATCGCCTACCCTCTT 33341 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || | || ||| | || ||| |||||| | ||| ||||| || Sbjct 33342 CAACGCCGGTACGCCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATGA 33401 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| ||||||| |||| ||| |||| |||||| ||||| ||| || || Sbjct 33402 CTCGATCGATGGCATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCGG 33461 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA---AGTCTCGTATTAGAGGTAC 111907 ||| || || | | |||| || | || |||| ||| | ||| ||||| Sbjct 33462 TGGCATTGGTCTCAATGTCCACTGCATCCGTGC-AACAGGCAGTTAC--ATTGCCGGTAC 33518 Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967 ||||||| ||| | || || || || ||||| || || || ||| ||| || | || Sbjct 33519 AAATGGTACATCCAACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCAGGTA 33578 Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021 ||| |||||| ||| ||||| ||| || | || | || |||||||||| Sbjct 33579 TGTCGACCAAGGTGGCAACAAGCGTCC--AGGTGCCTTT-GCTATTTACATTGAGCCATG 33635 Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081 |||||| || ||| | | |||||||| ||||| ||||| || | || |||| || Sbjct 33636 GCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCG 33695 Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141 ||||| | |||| ||||||||||| || ||||||||||||||| | || ||||| Sbjct 33696 CGCACGCGACTTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGGA 33755 Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201 || |||| | ||||| ||| | || || || | || ||| | ||| | || Sbjct 33756 GAATGGCGAGTGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGTATGG 33815 Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261 || || ||||||||| | ||||| ||||||||| | | | || | ||| | Sbjct 33816 CGATGAATTTGAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAGACCAT 33875 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || | || | ||||| | ||||||||| || | ||||| ||||| || | || | Sbjct 33876 -CAAGGCACAGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAATCCCT 33934 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||| ||||| |||||||| |||| ||| || || ||||| | ||| |||| Sbjct 33935 TCATGCTGTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACCATCA 33994 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 || | |||| | ||||| || || | || | | | |||||| |||||| | Sbjct 33995 AGTGCAGCAACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGCTGTCT 34054 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGT------ATGTGGATCCAGAGACAAAGACAT 112494 | || ||||| || || || | |||| | | || |||| ||| | Sbjct 34055 GCAATCTCGCCTCCATTGCCTTGCCCACCTTCATCGACATGCGCGCAGAAACACCCGTCT 34114 Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554 || | | || |||||||| || | || ||| | ||| | |||| | | Sbjct 34115 ACGACTTCAAGAAGCTCCACGATGTCGCCAAGGTTGTTGCTCGCAACTTGAACAAGATCA 34174 Query 112555 TTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611 | || || | ||||| | |||| ||| ||| || || | | | ||||| | Sbjct 34175 TCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGT---TCCAACAAGCGTCACCGAC 34231 Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTT 112670 | || ||||| ||||| ||||||||||| |||| ||| | | | || | |||| Sbjct 34232 CCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGC-CATTC 34290 Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730 || || ||| || ||||| | || | || |||||||| || || |||| ||| Sbjct 34291 GACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGGTGCT 34350 Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790 ||||| || | ||| ||||| | | || |||||||| |||| ||||| || Sbjct 34351 CTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGGCTCA 34410 Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCA 112846 || || || || || | | || | ||| ||| |||| || | |||||||| Sbjct 34411 CCTGCCTCTCAGGGACTTTTGCAGTATGACTTGT-GGAATGTCACACCCACCAAGCT--- 34466 Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTT 112904 || ||||||| | ||||| || | || ||| || | ||| | || ||| || Sbjct 34467 CTGGGACTGGGCGACGCTCAAAGAGCAGATTGCAA--AGCATGGTATCCGCAACTCCCTG 34524 Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964 ||| ||||| ||||| || || ||||| |||| || ||||| |||||||||||| Sbjct 34525 TTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTGGGTTTCAATGAATGCTTT 34584 Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024 || |||||||||| ||||| || | | | ||| || || ||||| | | || Sbjct 34585 GAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCCGGTGAGTTCCAGGTGGTG 34644 Query 113025 AAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081 ||| | ||| |||| ||| ||||| || |||||||| || |||||||| Sbjct 34645 AACCCTTGGTTGCTCAAGGAT---CTCGTTGAGATGGGACTCTGGTCAGAGAATATGAAG 34701 Query 113082 GATCTCAT 113089 ||| ||| Sbjct 34702 AATCGCAT 34709 Score = 86.0 bits (94), Expect = 8e-12 Identities = 139/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGCGA 16113 ||| || ||||| | ||| || |||||||| || | || || ||||| ||| Sbjct 591537 TCCAACAGCATCGAGCTCGTCGATGAAGACAATTGAAGGGGCCTTCTCCTTCGCCTGCG- 591595 Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 | ||||| || || | |||||| || || |||||||||||||| || |||||| | Sbjct 591596 ---CGAAGAGTTCTCGAATACGCTTCGCACCAACACCAACAAACATTTCGTCAAAGTCAG 591652 Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | || ||| || |||||| || || | || || ||||||||||| || || ||| Sbjct 591653 AGCCTGA-CATGAAGAAGAAGGGCACGTTGGCCTCCCCAGCAATGGCTCGAGCAAGGAGA 591711 Query 16233 GTCTTACCCGTACCTGG 16249 || || || |||||||| Sbjct 591712 GTTTTGCCGGTACCTGG 591728 >seq23 Length=690853 Score = 141 bits (156), Expect = 1e-28 Identities = 363/544 (67%), Gaps = 18/544 (3%) Strand=Plus/Plus Query 102085 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTA 102144 |||| ||||| || || ||| | ||| | || || || | | ||||| || ||||| Sbjct 88694 AGCACCTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCAC 88753 Query 102145 TGAAGTGGTTTG-ATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 102201 || ||| ||| | || | |||| | ||||||| ||| || | || ||||| Sbjct 88754 TGCGCTGGATTGCAGACGACGAGTC---TACCTTTGCACTGCGTCTTGTGGCTTTTGCTG 88810 Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 102261 ||| ||||| ||||| |||||||| || ||| | | || | ||||||||||||||| | Sbjct 88811 CTGTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTG 88870 Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321 |||||||||| || ||| ||| ||| ||||| ||||||||||||||||| |||||| Sbjct 88871 GTCTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACA 88930 Query 102322 AAGAGTTTGCGGTGGAACTTTTCAAATTA-TTGCGTATTAAACCAACGACTGAGACTATT 102380 ||| || || || ||| | | | | ||| | || || | | | | Sbjct 88931 CAGATTTCGC-CTGTCTCTTGTTTAGTCACTTGAAGAACAAGCCTTCAAAGCAACAGGTA 88989 Query 102381 CATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCA 102440 || || ||| ||||| |||||||||||| ||| ||| | || |||| ||| Sbjct 88990 CAAGACATCATTACTGAAGCTGTTGAGATTGAGCAGGCTTTCCTCACAGACTCCCTACCA 89049 Query 102441 TGCGCTCTCATCGGTATGAATTCTGAAAAG---ATGTCCGAATATATTGAGTATGTATCT 102497 ||| | | | ||||| || || |||| ||| ||| || ||||| | ||| || Sbjct 89050 TGCCCCTTATTGGGTATCAA---TGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCT 89106 Query 102498 GATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGA--ACTCCAAGAATCCATTTG 102555 ||| || | | | || || | || || | || ||| |||||||||| Sbjct 89107 GATCGACTCCT--CGTCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTG 89164 Query 102556 ACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGG 102615 |||| |||||||||||| |||| || ||||| |||||||| || ||| | || || | Sbjct 89165 ACTTTATGGAGAACATTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTG 89224 Query 102616 ACTA 102619 |||| Sbjct 89225 ACTA 89228 >seq11 Length=330268 Score = 123 bits (136), Expect = 3e-23 Identities = 212/301 (70%), Gaps = 14/301 (5%) Strand=Plus/Plus Query 176722 ATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAG 176781 ||||| ||||| || |||||||| || ||||||| ||| ||| ||||| |||||||| Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976 Query 176782 ACGACCATACCG-AAG-CTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAG 176839 | |||| || || ||| || || | || || || | || || || || | ||| | Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034 Query 176840 ATCTTCTTGAGATCGTTGAACTC----TTGGTT-TGATGTGAGCTGTGTGACAGAGGCAT 176894 ||| |||||| || | || || |||| |||| ||||| | | | |||| Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAG-----CTGCTGCAT 287089 Query 176895 CACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCA 176954 | || ||||| |||| ||||| | ||||| ||||| ||||||| || ||||| | Sbjct 287090 CTCGCACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAA 287149 Query 176955 CAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTAC 177014 |||| | || |||| |||||||| || || ||||| || || |||| ||||||||||| Sbjct 287150 CAGACATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTAC 287209 Query 177015 A 177015 | Sbjct 287210 A 287210 Score = 98.7 bits (108), Expect = 1e-15 Identities = 318/486 (65%), Gaps = 16/486 (3%) Strand=Plus/Plus Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900 || ||||| |||||| |||||||| || || | ||| || || |||| || | Sbjct 286039 CCAGTACCAATACCCGAGGTACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCAT 286098 Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTC--TCG 175958 |||||||| | | |||| || || || || ||||| | ||| |||| ||| Sbjct 286099 TCTGGCTCTACCATGAGACCGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCG 286158 Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGC----TTTGTAAAGATATACCTCGTTTGA 176014 | |||||||||| | | || |||| | ||||||||| || | || Sbjct 286159 CA--AAAGATCTTTTTTG----TGATGCGAGCCAAGTCTGTAAAGATGTAACGCGCGCTG 286212 Query 176015 GACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGC-TCAAGAAGATT 176073 | ||||| ||||||||| | |||| ||||| || |||||| ||| |||||| ||| Sbjct 286213 GCAGCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAGAC-ATT 286271 Query 176074 GATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC 176133 ||| ||||||| |||| || | ||||| |||||| || | || || ||||| Sbjct 286272 GATGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGAC 286331 Query 176134 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCA 176192 ||||||||| ||||| ||| | | ||| | || | ||| | | ||| || || || | Sbjct 286332 TTCACCGTGATGGTAGGCAGTGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGA 286390 Query 176193 TCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 176252 | || ||||||| || | ||| || || ||| || || || || ||||||| Sbjct 286391 TTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGA 286450 Query 176253 GACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGT 176312 ||||||| | || | || ||||| | |||||||| |||| | ||| | Sbjct 286451 AACCATCCATGACGTTGGGAATGGAACGAATGTTGTCCGCCATTGAGAAGAGAATGAGCT 286510 Query 176313 CCTTGT 176318 |||||| Sbjct 286511 CCTTGT 286516 >seq2 Length=565986 Score = 114 bits (126), Expect = 2e-20 Identities = 223/326 (68%), Gaps = 9/326 (3%) Strand=Plus/Minus Query 15970 TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCG 16029 |||| || ||||||||||| | |||||||| | ||| ||| |||||||| || | Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613 Query 16030 CTGGCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085 ||| || | |||||| || || |||||| | || ||||| ||||| | ||| Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553 Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 16145 |||||||| ||| ||| | ||| || |||| | || || || || | ||| Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493 Query 16146 ACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTAG 16203 ||||| |||||||| ||||| || | || | | || | || ||| || || | Sbjct 335492 ACACCGACAAACATTTCCACGAACTCTGAACCACTGACGCT--GAAGAAAGGTACGCCTG 335435 Query 16204 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 16263 |||||| ||| | ||| || || || ||||| || ||||||||| ||| | || | Sbjct 335434 CTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAA 335375 Query 16264 GGGCACCTCGTGGAATCTTGGCGCCA 16289 ||||||||| || |||||||||||| Sbjct 335374 TGGCACCTCGAGGGATCTTGGCGCCA 335349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742058591680