Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq43 277 2e-69
seq23 141 1e-28
seq11 123 3e-23
seq2 114 2e-20
>seq43
Length=605699
Score = 277 bits (306), Expect = 2e-69
Identities = 978/1508 (65%), Gaps = 51/1508 (3%)
Strand=Plus/Plus
Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671
|| ||| ||||| ||||||| ||||| | || || ||||| || || ||||| |
Sbjct 33223 CCGCAGCACATGATCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAGGCC 33282
Query 111672 TTGGAGACATACGACAAGATGTCC-CGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730
| ||||||||| || ||||| | | | |||| |||||| | || ||||||||
Sbjct 33283 ATTGAGACATACAACCTCATGTCTTCCAAGCAC-TTCACACACGCATCGCCTACCCTCTT 33341
Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790
|||||| ||||| || | || ||| | || ||| |||||| | ||| ||||| ||
Sbjct 33342 CAACGCCGGTACGCCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATGA 33401
Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850
|| ||| ||||||| |||| ||| |||| |||||| ||||| ||| || ||
Sbjct 33402 CTCGATCGATGGCATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCGG 33461
Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACA---AGTCTCGTATTAGAGGTAC 111907
||| || || | | |||| || | || |||| ||| | ||| |||||
Sbjct 33462 TGGCATTGGTCTCAATGTCCACTGCATCCGTGC-AACAGGCAGTTAC--ATTGCCGGTAC 33518
Query 111908 AAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTA 111967
||||||| ||| | || || || || ||||| || || || ||| ||| || | ||
Sbjct 33519 AAATGGTACATCCAACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCAGGTA 33578
Query 111968 TGTAAACCAAGCTGG------GCGTCGCAAGGGATCTATCGCAGTCTATCTTGAGCCATG 112021
||| |||||| ||| ||||| ||| || | || | || ||||||||||
Sbjct 33579 TGTCGACCAAGGTGGCAACAAGCGTCC--AGGTGCCTTT-GCTATTTACATTGAGCCATG 33635
Query 112022 GCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGGCGCG 112081
|||||| || ||| | | |||||||| ||||| ||||| || | || |||| ||
Sbjct 33636 GCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCG 33695
Query 112082 GTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGA 112141
||||| | |||| ||||||||||| || ||||||||||||||| | || |||||
Sbjct 33696 CGCACGCGACTTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGGA 33755
Query 112142 GAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGG 112201
|| |||| | ||||| ||| | || || || | || ||| | ||| | ||
Sbjct 33756 GAATGGCGAGTGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGTATGG 33815
Query 112202 TGAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGCGACGGT 112261
|| || ||||||||| | ||||| ||||||||| | | | || | ||| |
Sbjct 33816 CGATGAATTTGAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAGACCAT 33875
Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320
| || | || | ||||| | ||||||||| || | ||||| ||||| || | || |
Sbjct 33876 -CAAGGCACAGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAATCCCT 33934
Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380
||||| ||||| |||||||| |||| ||| || || ||||| | ||| ||||
Sbjct 33935 TCATGCTGTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACCATCA 33994
Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440
|| | |||| | ||||| || || | || | | | |||||| |||||| |
Sbjct 33995 AGTGCAGCAACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGCTGTCT 34054
Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGT------ATGTGGATCCAGAGACAAAGACAT 112494
| || ||||| || || || | |||| | | || |||| ||| |
Sbjct 34055 GCAATCTCGCCTCCATTGCCTTGCCCACCTTCATCGACATGCGCGCAGAAACACCCGTCT 34114
Query 112495 TTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTA 112554
|| | | || |||||||| || | || ||| | ||| | |||| | |
Sbjct 34115 ACGACTTCAAGAAGCTCCACGATGTCGCCAAGGTTGTTGCTCGCAACTTGAACAAGATCA 34174
Query 112555 TTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACACCGTC 112611
| || || | ||||| | |||| ||| ||| || || | | | ||||| |
Sbjct 34175 TCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGT---TCCAACAAGCGTCACCGAC 34231
Query 112612 CAATTGGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGCATTT 112670
| || ||||| ||||| ||||||||||| |||| ||| | | | || | ||||
Sbjct 34232 CCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGC-CATTC 34290
Query 112671 GATTCCGACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCT 112730
|| || ||| || ||||| | || | || |||||||| || || |||| |||
Sbjct 34291 GACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGGTGCT 34350
Query 112731 CTTGAGGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCT 112790
||||| || | ||| ||||| | | || |||||||| |||| ||||| ||
Sbjct 34351 CTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGGCTCA 34410
Query 112791 CCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGCTTCA 112846
|| || || || || | | || | ||| ||| |||| || | ||||||||
Sbjct 34411 CCTGCCTCTCAGGGACTTTTGCAGTATGACTTGT-GGAATGTCACACCCACCAAGCT--- 34466
Query 112847 CTACGACTGGGACGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAGTCTT 112904
|| ||||||| | ||||| || | || ||| || | ||| | || ||| ||
Sbjct 34467 CTGGGACTGGGCGACGCTCAAAGAGCAGATTGCAA--AGCATGGTATCCGCAACTCCCTG 34524
Query 112905 TTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTT 112964
||| ||||| ||||| || || ||||| |||| || ||||| ||||||||||||
Sbjct 34525 TTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTGGGTTTCAATGAATGCTTT 34584
Query 112965 GAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTC 113024
|| |||||||||| ||||| || | | | ||| || || ||||| | | ||
Sbjct 34585 GAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCCGGTGAGTTCCAGGTGGTG 34644
Query 113025 AAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAG 113081
||| | ||| |||| ||| ||||| || |||||||| || ||||||||
Sbjct 34645 AACCCTTGGTTGCTCAAGGAT---CTCGTTGAGATGGGACTCTGGTCAGAGAATATGAAG 34701
Query 113082 GATCTCAT 113089
||| |||
Sbjct 34702 AATCGCAT 34709
Score = 86.0 bits (94), Expect = 8e-12
Identities = 139/197 (71%), Gaps = 10/197 (5%)
Strand=Plus/Plus
Query 16058 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGCGA 16113
||| || ||||| | ||| || |||||||| || | || || ||||| |||
Sbjct 591537 TCCAACAGCATCGAGCTCGTCGATGAAGACAATTGAAGGGGCCTTCTCCTTCGCCTGCG- 591595
Query 16114 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173
| ||||| || || | |||||| || || |||||||||||||| || |||||| |
Sbjct 591596 ---CGAAGAGTTCTCGAATACGCTTCGCACCAACACCAACAAACATTTCGTCAAAGTCAG 591652
Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232
| | || ||| || |||||| || || | || || ||||||||||| || || |||
Sbjct 591653 AGCCTGA-CATGAAGAAGAAGGGCACGTTGGCCTCCCCAGCAATGGCTCGAGCAAGGAGA 591711
Query 16233 GTCTTACCCGTACCTGG 16249
|| || || ||||||||
Sbjct 591712 GTTTTGCCGGTACCTGG 591728
>seq23
Length=690853
Score = 141 bits (156), Expect = 1e-28
Identities = 363/544 (67%), Gaps = 18/544 (3%)
Strand=Plus/Plus
Query 102085 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGATTGGGCTA 102144
|||| ||||| || || ||| | ||| | || || || | | ||||| || |||||
Sbjct 88694 AGCACCTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCAC 88753
Query 102145 TGAAGTGGTTTG-ATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 102201
|| ||| ||| | || | |||| | ||||||| ||| || | || |||||
Sbjct 88754 TGCGCTGGATTGCAGACGACGAGTC---TACCTTTGCACTGCGTCTTGTGGCTTTTGCTG 88810
Query 102202 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 102261
||| ||||| ||||| |||||||| || ||| | | || | ||||||||||||||| |
Sbjct 88811 CTGTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTG 88870
Query 102262 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 102321
|||||||||| || ||| ||| ||| ||||| ||||||||||||||||| ||||||
Sbjct 88871 GTCTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACA 88930
Query 102322 AAGAGTTTGCGGTGGAACTTTTCAAATTA-TTGCGTATTAAACCAACGACTGAGACTATT 102380
||| || || || ||| | | | | ||| | || || | | | |
Sbjct 88931 CAGATTTCGC-CTGTCTCTTGTTTAGTCACTTGAAGAACAAGCCTTCAAAGCAACAGGTA 88989
Query 102381 CATTCTATTGTTAAGGAAGCCGTTGAGATTGAGAAGGGATTCATATTGGATGCCCTTCCA 102440
|| || ||| ||||| |||||||||||| ||| ||| | || |||| |||
Sbjct 88990 CAAGACATCATTACTGAAGCTGTTGAGATTGAGCAGGCTTTCCTCACAGACTCCCTACCA 89049
Query 102441 TGCGCTCTCATCGGTATGAATTCTGAAAAG---ATGTCCGAATATATTGAGTATGTATCT 102497
||| | | | ||||| || || |||| ||| ||| || ||||| | ||| ||
Sbjct 89050 TGCCCCTTATTGGGTATCAA---TGCAAAGCTCATGCGCGAGTACATTGAATTTGTCGCT 89106
Query 102498 GATAGATTGTTGAAGCAGATCGGGGTGCCTCCAATTTGGA--ACTCCAAGAATCCATTTG 102555
||| || | | | || || | || || | || ||| ||||||||||
Sbjct 89107 GATCGACTCCT--CGTCTCTCTTGGCAACAAAAAGTTCTATCACACCAGCAATCCATTTG 89164
Query 102556 ACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTCTTCGAAAAGAGGGTTGGGG 102615
|||| |||||||||||| |||| || ||||| |||||||| || ||| | || || |
Sbjct 89165 ACTTTATGGAGAACATTTCACTCGCTGGCAAGACCAACTTCTTTGAGAAGCGTGTCGGTG 89224
Query 102616 ACTA 102619
||||
Sbjct 89225 ACTA 89228
>seq11
Length=330268
Score = 123 bits (136), Expect = 3e-23
Identities = 212/301 (70%), Gaps = 14/301 (5%)
Strand=Plus/Plus
Query 176722 ATTGAGAATGAGACCCTTGATGTGGGAACCGTCGTTATCGGCATCCGTCATGATCATGAG 176781
||||| ||||| || |||||||| || ||||||| ||| ||| ||||| ||||||||
Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976
Query 176782 ACGACCATACCG-AAG-CTCGGAAACATCTTGATAGTCCTTACCCTGTTGAAGACCCAAG 176839
| |||| || || ||| || || | || || || | || || || || | ||| |
Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034
Query 176840 ATCTTCTTGAGATCGTTGAACTC----TTGGTT-TGATGTGAGCTGTGTGACAGAGGCAT 176894
||| |||||| || | || || |||| |||| ||||| | | | ||||
Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAG-----CTGCTGCAT 287089
Query 176895 CACGAACATTCTTACACTTCCCACGAAGAGGGAAGACACCGTAGTGATCGCGACCAACCA 176954
| || ||||| |||| ||||| | ||||| ||||| ||||||| || ||||| |
Sbjct 287090 CTCGCACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAA 287149
Query 176955 CAGAGAGACCCGCAACCGCGAGCGTTTTCGCAGAATCACCCTCTGTCACGATGAGTGTAC 177014
|||| | || |||| |||||||| || || ||||| || || |||| |||||||||||
Sbjct 287150 CAGACATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTAC 287209
Query 177015 A 177015
|
Sbjct 287210 A 287210
Score = 98.7 bits (108), Expect = 1e-15
Identities = 318/486 (65%), Gaps = 16/486 (3%)
Strand=Plus/Plus
Query 175841 CCCGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 175900
|| ||||| |||||| |||||||| || || | ||| || || |||| || |
Sbjct 286039 CCAGTACCAATACCCGAGGTACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCAT 286098
Query 175901 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTC--TCG 175958
|||||||| | | |||| || || || || ||||| | ||| |||| |||
Sbjct 286099 TCTGGCTCTACCATGAGACCGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCG 286158
Query 175959 GATCAAAGATCTTTCGGGCATCTTTTGTGAGC----TTTGTAAAGATATACCTCGTTTGA 176014
| |||||||||| | | || |||| | ||||||||| || | ||
Sbjct 286159 CA--AAAGATCTTTTTTG----TGATGCGAGCCAAGTCTGTAAAGATGTAACGCGCGCTG 286212
Query 176015 GACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGC-TCAAGAAGATT 176073
| ||||| ||||||||| | |||| ||||| || |||||| ||| |||||| |||
Sbjct 286213 GCAGCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAGAC-ATT 286271
Query 176074 GATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC 176133
||| ||||||| |||| || | ||||| |||||| || | || || |||||
Sbjct 286272 GATGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGAC 286331
Query 176134 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCA 176192
||||||||| ||||| ||| | | ||| | || | ||| | | ||| || || || |
Sbjct 286332 TTCACCGTGATGGTAGGCAGTGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGA 286390
Query 176193 TCTCATCCTTGAGATTCTTGTGGAAACATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 176252
| || ||||||| || | ||| || || ||| || || || || |||||||
Sbjct 286391 TTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGA 286450
Query 176253 GACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGT 176312
||||||| | || | || ||||| | |||||||| |||| | ||| |
Sbjct 286451 AACCATCCATGACGTTGGGAATGGAACGAATGTTGTCCGCCATTGAGAAGAGAATGAGCT 286510
Query 176313 CCTTGT 176318
||||||
Sbjct 286511 CCTTGT 286516
>seq2
Length=565986
Score = 114 bits (126), Expect = 2e-20
Identities = 223/326 (68%), Gaps = 9/326 (3%)
Strand=Plus/Minus
Query 15970 TATCAAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCG 16029
|||| || ||||||||||| | |||||||| | ||| ||| |||||||| || |
Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613
Query 16030 CTGGCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 16085
||| || | |||||| || || |||||| | || ||||| ||||| | |||
Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553
Query 16086 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 16145
|||||||| ||| ||| | ||| || |||| | || || || || | |||
Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493
Query 16146 ACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTAG 16203
||||| |||||||| ||||| || | || | | || | || ||| || || |
Sbjct 335492 ACACCGACAAACATTTCCACGAACTCTGAACCACTGACGCT--GAAGAAAGGTACGCCTG 335435
Query 16204 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 16263
|||||| ||| | ||| || || || ||||| || ||||||||| ||| | || |
Sbjct 335434 CTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAA 335375
Query 16264 GGGCACCTCGTGGAATCTTGGCGCCA 16289
||||||||| || ||||||||||||
Sbjct 335374 TGGCACCTCGAGGGATCTTGGCGCCA 335349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620742058591680
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