Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq43 228 1e-54 seq23 203 4e-47 >seq43 Length=605699 Score = 228 bits (252), Expect = 1e-54 Identities = 1115/1748 (64%), Gaps = 57/1748 (3%) Strand=Plus/Minus Query 109408 CGAAGATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAG 109467 || || || ||||| ||||| ||||| || |||||| | || | ||||| || | Sbjct 34952 CGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTA 34893 Query 109468 AGTTTGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAAT 109527 | ||| | |||||| || | | |||||| | || || |||||||| || || Sbjct 34892 ATTTTACCGAATGTCGGCGCCTTGAGATGCAAGTTGAGGGATTGCGACTGATCAATAAAG 34833 Query 109528 CGACCACGATCAGCCGCCATGTCGATGATACACTTTTGGCTA-ATTTCCCAGACAGTCTT 109586 |||||| ||||| ||||| ||||| | ||||||| | | | ||||| |||||||| Sbjct 34832 GCACCACGGTCAGCAGCCATATCGATCAC-CACTTTTTGAGAGAGCTCCCATACAGTCTT 34774 Query 109587 GTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTT 109646 ||| | || | || | || |||| ||||||||| | |||||||||| | Sbjct 34773 GTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGGC 34714 Query 109647 CACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT----CAA 109702 | ||| ||| |||||| | | |||||||| || | || |||||| | ||| Sbjct 34713 AATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTTGAGCAA 34654 Query 109703 CAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAG 109762 | | | | ||| ||||| || ||||| ||||| || || ||| ||||| Sbjct 34653 CCA-AGG---GTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGC 34598 Query 109763 TCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCA 109822 |||||||||| || || || |||||| || || || |||| ||||| || ||||||| Sbjct 34597 TCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCA 34538 Query 109823 TGGGAGCCATGAGAAGACTGTTTCGGAGACCCTTCGTCTTTACCCGCTCACGCATTGCGT 109882 | || || | || ||| |||| ||| | | | | | |||| | |||| Sbjct 34537 TCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGCAATCTGCTCTTTGA--GCGT 34480 Query 109883 C--CCAATCATAACGACCACTAAATTTAGTCTCACCATCCCACATATCTGGTTGAAGTAC 109940 | ||| || | | || | || | || || ||||| || || | | Sbjct 34479 CGCCCAGTCCCAGAG----CTTGGTGG-GTGTGAC-ATTCCACAAGTCATACTGCAAAAG 34426 Query 109941 ACCCTCAGCAGCAGGAGAACCCTTGAAACTCTCGTACGACCCCTCAACCTCGGCCAACTC 110000 |||| || ||||| || |||| | | | ||| | ||||| | | |||| ||| Sbjct 34425 TCCCTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTC 34366 Query 110001 GGATGAAGCCTCTAGTGCCGCATGATACATAGTCTCAAAAATATGAGCATTCATGAGGCG 110060 | || || || || || | || || || |||||||| || || |||| Sbjct 34365 ACACGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTT 34306 Query 110061 AGACTCTTCACAGTCGAAGGGAAGACCA----CAAAGAATAAACACATCCGCTAGACCCT 110116 | ||| ||||||| || || | | ||||| |||| || ||||| | Sbjct 34305 GGCCTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAGAAGG----CATCGGCGAGACCTT 34250 Query 110117 GAACACCGAGACCAATGGGGCGATGCTTCATGTTAGAGCGTCGAGCAGTTTCTACG---G 110173 | ||||| ||||| ||||| || || | |||| || || ||| ||| | | | Sbjct 34249 GCACACCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTCAGC---TTCAATGACTG 34193 Query 110174 GGTAAAAGTTGCGGTCGATGACCCGATTGAGATTCTTCGTCACAGTCTTCGTGATTTCAT 110233 |||| ||||| |||||||| | || | || | ||| ||| | || || | Sbjct 34192 GGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGT 34133 Query 110234 GGAGTTTGTCGTAATCGAAC----GT-TTTCGTCTC-CTTATTGACATATTTGGGGAGAG 110287 |||| || | | | ||| | || |||| | | | | | || | |||| | | Sbjct 34132 GGAGCTTCTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGG 34073 Query 110288 CAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCCG 110347 |||| || || |||||||| |||| ||| || | | ||| || | ||| || | Sbjct 34072 CAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGG 34013 Query 110348 TACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCATG 110407 ||||||||||| | ||| ||| ||| | ||||||||| ||||| ||| |||||| | Sbjct 34012 TACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGG 33953 Query 110408 CATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTCC 110467 | ||||| || |||||| | || | || || || || || | || |||||| || | || Sbjct 33952 CGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACC 33893 Query 110468 ATA-CATCGGCGGCGGGGACAGT-TGCGTTAGCGAGACCTTCCTCCTCGTACTTGGTGTA 110525 | | | || | | | | | || | | | | | | || ||| ||||||||||||||| Sbjct 33892 ACAGCTTCTGTGCCTTG-ATGGTCTTCATGACCTTG-CCGGCCTTCTCGTACTTGGTGTA 33835 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 |||| | |||||||| | || ||||| || | ||| | || ||| || | Sbjct 33834 CAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACAT 33775 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| ||||| | ||| |||||| || | ||||||||| || ||||| ||||| | || Sbjct 33774 GAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGC 33715 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 |||| | ||| || || ||||||| | || ||||| ||| | || | || Sbjct 33714 ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAA 33655 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACG 110762 | | | ||| || | ||||||||| || | || | ||| | || || ||| Sbjct 33654 GCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTT 33595 Query 110763 ACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCC 110822 || | |||| ||||| | || ||| |||||||| | ||||| || || || || Sbjct 33594 GCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCC 33535 Query 110823 ATCGGATTGACCATTTGTACCCCTAAT---TCTGGACTTATTGGCACGAATGTCGTGGAT 110879 | |||| |||||||||||| ||| ||| | | || ||||| ||| ||||| Sbjct 33534 GTTGGATGTACCATTTGTACCGGCAATGTAACTG--CCTGTT-GCACGGATGCAGTGGAC 33478 Query 110880 ATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATA 110939 || | |||||| ||||| || |||| || |||||| | ||||||| | || Sbjct 33477 ATTGAGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTA 33418 Query 110940 AATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACG 110999 || ||||| ||||| || |||| | | | || |||||||| || | || || Sbjct 33417 GATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTT 33358 Query 111000 AGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGG--GACATC 111057 ||||| || || |||||||| ||||| | || || ||| || ||||| ||||| Sbjct 33357 GGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATG 33300 Query 111058 TTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACCGTGAATACCAATGGCAACTCGC 111117 ||||||||| || | || | || | ||| ||||| |||| || || ||| Sbjct 33299 AGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGC 33240 Query 111118 ATGAACAT 111125 |||| ||| Sbjct 33239 ATGATCAT 33232 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 11677 CCGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCG 11736 || ||||| || | ||| |||||||| || || | || || | ||||| || Sbjct 591538 CCAACAGCATCGAGCTCGTCGATGAAGACAATTGAAGGGGCCTTCTCCTTCGCCTGCGCG 591597 Query 11737 AAAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCA 11796 || ||||| || | ||||||||| |||||||| || ||||| || | |||| | | | Sbjct 591598 AAGAGTTCTCGAATACGCTTCGCACCAACACCAACAAACATTTCGTCAAAGTCAGAGCCT 591657 Query 11797 GAACACTGAAT--GAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCT 11854 || || |||| |||||| || || | ||| ||||| ||||||||||| |||||||| | Sbjct 591658 GA-CA-TGAAGAAGAAGGGCACGTTGGCCTCCCCAGCAATGGCTCGAGCAAGGAGAGTTT 591715 Query 11855 TACCCGTACCAGG 11867 | || ||||| || Sbjct 591716 TGCCGGTACCTGG 591728 >seq23 Length=690853 Score = 203 bits (224), Expect = 4e-47 Identities = 577/872 (66%), Gaps = 25/872 (3%) Strand=Plus/Minus Query 119208 TAGTCACCCACCCTCTTTTCGAAGAAATTCGTCTTACCATCGAGTGAGATGTTTTCCATA 119267 |||||||| || | ||| || ||||| || ||||| ||| ||||||| ||||| |||||| Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169 Query 119268 AAGTCAAAAGGATTTTTGGAGTTCCAGAT-TGGTGGTTGACCAACTTGTTTCAGAAGACG 119326 |||||||| ||||| ||| || ||| | | |||| |||| || || || Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTG-CCAAGAGAGACGAGGAGTCG 89110 Query 119327 ATCGGAGACATACTCGATATATTCGGACAT---CTTTTCCGAATTCATACCTATGAGATT 119383 ||| | |||| | || || || ||| ||| |||| | ||| ||||| | | Sbjct 89109 ATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGC---ATTGATACCCAATAAGGG 89053 Query 119384 ACACGGGAGAGCATCGAGGATGAAGTTCTTCTCGATCTCCACAGCTTCTTTCACGATGGA 119443 || || || | || || ||| || ||| ||||| |||||||| | | |||| Sbjct 89052 GCATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTC 88993 Query 119444 GTGAATA-GTTTCTGTCGATGGTTTGTTTCTCAAGAGTTTAAACAACTCTACGGCAAATT 119502 || | ||| || | || || ||||| ||||| | ||||||| ||| || | Sbjct 88992 TTGTACCTGTTGCTTT-GAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACAGGCGAAAT 88934 Query 119503 CTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGA 119562 || || || || || || ||||||||||||||||| || ||| ||||| ||||||| Sbjct 88933 CTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGA 88874 Query 119563 GTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCA 119622 | || | ||||| ||||||||||||| || ||||| || ||||| ||||| | Sbjct 88873 GACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGA 88814 Query 119623 CACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCG------AACCACT 119676 || || ||||| | |||||| || |||||| ||||| |||| | ||| Sbjct 88813 CAGCAGCAAAAGCCACAAGACGCAGTGC-AAAGGT--AGACTCGTCGTCTGCAATCCAGC 88757 Query 119677 TGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTT 119736 || ||||||| || || ||| ||||| |||| || | ||| || ||||| || | Sbjct 88756 GCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGT 88697 Query 119737 GCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCAT 119796 ||| | || ||| ||||| || ||| |||||||||| ||||||||||| | Sbjct 88696 GCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGT 88637 Query 119797 GAACCATTTCATTGTGTGA-CTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACT 119855 | | |||| ||| ||| || |||| || | || || || | | ||| ||| Sbjct 88636 GGATGTTTTC-CGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGACT 88578 Query 119856 TCGTCAGCAAAATTGTTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAAT 119915 |||| | ||| | | | ||||||| ||||| ||||| | || ||||| Sbjct 88577 TCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAGAAA 88518 Query 119916 GCTAAGATGTACTTTATGAATTTCTGTTCATTATCGTTGAG--TGTT-TTCCAGTCGTCC 119972 || | || || ||||| |||| | |||||||| |||| | |||||||| | Sbjct 88517 GCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGTGC 88458 Query 119973 ATATCTTTAGACAAGTCCACCTCTTCAGCTGTCCAGTTAGACATCTGTGCCTTTTTATAG 120032 | || || || | ||| | ||| || || |||||| || | ||||||||| || Sbjct 88457 AGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGTAC 88398 Query 120033 AGTTCCCAAAGTTCAGGATACTTCA-GGGGAA 120063 | || ||||| || ||||||| | |||||| Sbjct 88397 ATTTGCCAAATCTCGTGATACTTGATGGGGAA 88366 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975676063200