Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq43 242 4e-59
seq23 129 7e-25
seq2 104 3e-17
seq11 91.5 2e-13
>seq43
Length=605699
Score = 242 bits (268), Expect = 4e-59
Identities = 1059/1652 (64%), Gaps = 65/1652 (4%)
Strand=Plus/Minus
Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTC 105756
||| ||||| ||| |||||| | || |||||||| || || | || || ||
Sbjct 34845 CTGATCAATAAAGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTC 34786
Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816
||| || || |||||| || | || | ||||| | || ||| ||||| | ||
Sbjct 34785 CCATACAGTCTTGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGA 34726
Query 105817 ACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAG 105876
|| || | | ||| ||| |||||||| || ||||| || || |||| |||
Sbjct 34725 GCCACCATCGGCAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAG 34666
Query 105877 ATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATA 105936
||| |||| | ||| || | | ||||| || || ||| | | | ||
Sbjct 34665 ATCCTTGAGCAACCAAGGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTA 34606
Query 105937 GATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGC 105996
||||| |||||||||| |||||||||||||| ||||| || |||| ||||| ||
Sbjct 34605 AATGTTGCTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGC 34546
Query 105997 TGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTTCC 106054
|| ||||| ||||| ||| || ||| || | ||| | | ||| || | ||
Sbjct 34545 AGTGGGCATCGGTGCACACAACAGGGAGTTGCGGATACCATGCT--TTGCAATCTGCTCT 34488
Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTT----TCACCTTCCCACATATCAAATTG 106110
||||| ||||||| || |||||||| | || |||| ||| ||| | ||
Sbjct 34487 TTGAGCGTCGCCCAGTCCCAG---AGCTTGGTGGGTGTGACATTCC-ACAAGTCATACTG 34432
Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170
| | || || || | || || ||||| | || || | ||| | ||| ||
Sbjct 34431 CAAAAGTCCCTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGC 34372
Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230
|| ||||| || || || | |||| || ||||| |||||||| | ||||
Sbjct 34371 CAGCTCACACGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAG 34312
Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA---CAAAATAAATACATCCGCGAG 106287
||||||||| || || || |||| | ||| | | || || |||| |||||
Sbjct 34311 CTCCTTGGCCTCGGGCGAGTCGAATG-GCAGCTTAAGTGCCAAG--AAGGCATCGGCGAG 34255
Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347
|||||| ||||| | ||| || |||| ||| ||| | || || ||| ||| ||||
Sbjct 34254 ACCTTGCACACCAAGACCGATGGGTCGGTGACGCTTGTTGGAA---CGCTCAGCTTCAAT 34198
Query 106348 G---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404
| || || | || ||| |||| ||| | || | ||||| ||| | ||
Sbjct 34197 GACTGGGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGAC 34138
Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGAC-AT--ACTTTGG 106458
|| || || || | | || | | | || ||| | || | || | | ||
Sbjct 34137 ATCGTGGAGCTTCTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGG 34078
Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518
| ||| || || || | |||||| |||||| |||||| | | |||||| | |||
Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018
Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578
|| |||||||||||| | ||| || || || | ||||| ||||| ||| |||
Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958
Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638
||| || |||||||| |||||| |||| | |||||||| || || | || |||||| ||
Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898
Query 106639 CTTCCACA-CATCGGCGGCTGGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTACT 106694
| ||||| | || | | || | |||| | || || || || ||||||||
Sbjct 33897 GTACCACAGCTTCTGTGCCTTG----ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACT 33842
Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754
| ||||| | ||||||||| || || || | | ||| | ||| || | || |
Sbjct 33841 TGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGG 33782
Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814
| || | || ||||| | ||| |||||| || ||||||||||| || || || ||||
Sbjct 33781 GGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCC 33722
Query 106815 ACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873
| || | | || | || | | | | || ||||||| | || ||||| || ||
Sbjct 33721 AGAGAGCATAGAACAAGTCGCGTGCGCGGA-CCTCTTCCTTGCCGTGGTTCTTGCGCAAG 33663
Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933
|||||||| | | ||| || |||||||||||||||| || | || | | || |
Sbjct 33662 TCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACC---T 33606
Query 106934 CGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987
||||| ||| |||| | ||||| | || ||| ||| || || || |||||
Sbjct 33605 GGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATG 33546
Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT--CA 107045
|| || || || | ||| ||||||||| || ||| | | || || | ||
Sbjct 33545 GGGATGATGCCGTTGGATGTACCATTTGTACCGGCAAT------GTAACTGCCTGTTGCA 33492
Query 107046 C--AT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101
| || || |||| | | ||||| || || || ||| ||||| ||||||
Sbjct 33491 CGGATGCAGTGGACATTGAGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTT 33432
Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161
| || || | ||||| || | ||| ||||| ||||| | | || ||||||||||
Sbjct 33431 TTGAGTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGAC 33372
Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221
|| | || || | || ||||| || ||||||||||| || | |||||| ||| |
Sbjct 33371 GAGAGTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGT 33314
Query 107222 CCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGC 107279
||||| ||||| || ||||||||| | | | |||||||| || || || ||||
Sbjct 33313 GCTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGC 33254
Query 107280 CGATGGCCACACGCATAAACATGTATTGGGGT 107311
| | || |||||||| | ||||| || |||
Sbjct 33253 CAACAGCGACACGCATGATCATGTGCTGCGGT 33222
>seq23
Length=690853
Score = 129 bits (142), Expect = 7e-25
Identities = 378/575 (66%), Gaps = 12/575 (2%)
Strand=Plus/Minus
Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045
||||| || || ||||||||||||||||||||||| ||| | || |||||| ||||||
Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169
Query 117046 AAGTCAAATGGATTCTTCGCGT--TCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103
|||||||||||||| | | || | || | || || || |||||| |
Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCC--AAGAGAGACGAGGAGTC 89111
Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163
|||| | ||| | |||||||||||| ||| || | || ||||| | | |
Sbjct 89110 GATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGGC 89051
Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223
|||| || | ||| || ||| | | |||||||||||| || || | | |||| | |
Sbjct 89050 ATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCTT 88991
Query 117224 GGATAGTTTCGGTAGTGGGTCTATTACGCAAA-GTCTTGAAGAGCTCCACGGCAAACTCC 117282
| | || | | || | || ||| | || | || || ||| || ||
Sbjct 88990 GTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAATCT 88932
Query 117283 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGA 117342
|||||||||||| || || || || || ||||| ||| || || |||||||||
Sbjct 88931 GTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGA 88872
Query 117343 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 117402
|| |||||||| | |||| | || | | ||| || || ||||| ||||| ||||| |||
Sbjct 88871 CCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACA 88812
Query 117403 CACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGTGT-CAAACCATTTC 117459
||||| || | ||| ||| || |||| ||||| | || | ||| ||| |
Sbjct 88811 GCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCCAGCGC 88755
Query 117460 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 117519
| |||||| | || || | || || || || | || | ||| || || || | |||
Sbjct 88754 AGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGC 88695
Query 117520 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554
| | || || | ||||| |||||| | |||||
Sbjct 88694 TGCCGTTGAGCTTGTTCCTTGATGTATGTATCAAT 88660
>seq2
Length=565986
Score = 104 bits (114), Expect = 3e-17
Identities = 247/368 (67%), Gaps = 13/368 (4%)
Strand=Plus/Minus
Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336
|||| || ||||||||||| | || ||||| | ||| ||| |||||||| || |
Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613
Query 9337 CTGGCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9392
||| || | |||||| || || |||||| | || ||||| ||||| | |||
Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553
Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452
|| || || ||| ||| | ||| || | |||| | ||||| || | | |||
Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493
Query 9453 ACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTAG 9510
||||| |||||||| ||||| || | || | | || | || ||| || || |
Sbjct 335492 ACACCGACAAACATTTCCACGAACTCTGAACCACTGACGCT--GAAGAAAGGTACGCCTG 335435
Query 9511 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9570
|||||| ||| | ||| || || || ||||| || ||||||||| ||| | || |
Sbjct 335434 CTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAA 335375
Query 9571 GGGCACCCCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCAGGTTGCTTGAGAAA 9628
|||||| || || |||||||||||| |||| | || || |||| | |||||| ||
Sbjct 335374 TGGCACCTCGAGGGATCTTGGCGCCAAGCTTCTCA--TAGATCCCAGGCTCCTTGAGGAA 335317
Query 9629 ATCCACAA 9636
| ||||
Sbjct 335316 CTTGACAA 335309
>seq11
Length=330268
Score = 91.5 bits (100), Expect = 2e-13
Identities = 201/296 (68%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 169172 ATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAG 169231
||| | |||||| || |||||||| || || || | ||| ||| ||||||||||| ||
Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976
Query 169232 ACGACCATAGCG-AAGT-TCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAG 169289
| |||| || || |||| | || | || | ||| | ||| || || || | ||| |
Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGT-GTACTTTTTCCCATGCTGCAAACCGAGA 287034
Query 169290 ATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGG 169349
||| |||||| || | || || || | ||| || || ||| || || ||
Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094
Query 169350 ACATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAG 169409
||||| |||| ||||| | || || || ||| ||||||| |||||||| || ||
Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154
Query 169410 AGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465
| || || | || || || || || ||||| || ||||| | ||||| |||||
Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589980475510560
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