Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq43 242 4e-59 seq23 129 7e-25 seq2 104 3e-17 seq11 91.5 2e-13 >seq43 Length=605699 Score = 242 bits (268), Expect = 4e-59 Identities = 1059/1652 (64%), Gaps = 65/1652 (4%) Strand=Plus/Minus Query 105697 CTGGTCAATGAAGCGACCACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTC 105756 ||| ||||| ||| |||||| | || |||||||| || || | || || || Sbjct 34845 CTGATCAATAAAGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTC 34786 Query 105757 CCACACTGTGCGGTAGAGATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGA 105816 ||| || || |||||| || | || | ||||| | || ||| ||||| | || Sbjct 34785 CCATACAGTCTTGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGA 34726 Query 105817 ACCCCCCGCCTTGACCATGAGATCCTTCATATCCTTGGACCAAAGACCAATCTTCTTGAG 105876 || || | | ||| ||| |||||||| || ||||| || || |||| ||| Sbjct 34725 GCCACCATCGGCAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAG 34666 Query 105877 ATCATTGACGAGATGCTTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATA 105936 ||| |||| | ||| || | | ||||| || || ||| | | | || Sbjct 34665 ATCCTTGAGCAACCAAGGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTA 34606 Query 105937 GATGTTCGTCGTGTAGGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGC 105996 ||||| |||||||||| |||||||||||||| ||||| || |||| ||||| || Sbjct 34605 AATGTTGCTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGC 34546 Query 105997 TGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTTTCCTTG--ATGCGTTCC 106054 || ||||| ||||| ||| || ||| || | ||| | | ||| || | || Sbjct 34545 AGTGGGCATCGGTGCACACAACAGGGAGTTGCGGATACCATGCT--TTGCAATCTGCTCT 34488 Query 106055 TTGAGAACATCCCAGTCGTAGTTGAGCTTGGTT----TCACCTTCCCACATATCAAATTG 106110 ||||| ||||||| || |||||||| | || |||| ||| ||| | || Sbjct 34487 TTGAGCGTCGCCCAGTCCCAG---AGCTTGGTGGGTGTGACATTCC-ACAAGTCATACTG 34432 Query 106111 AAGCACCCCTTGGGACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGC 106170 | | || || || | || || ||||| | || || | ||| | ||| || Sbjct 34431 CAAAAGTCCCTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGC 34372 Query 106171 CAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCAT 106230 || ||||| || || || | |||| || ||||| |||||||| | |||| Sbjct 34371 CAGCTCACACGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAG 34312 Query 106231 CTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA---CAAAATAAATACATCCGCGAG 106287 ||||||||| || || || |||| | ||| | | || || |||| ||||| Sbjct 34311 CTCCTTGGCCTCGGGCGAGTCGAATG-GCAGCTTAAGTGCCAAG--AAGGCATCGGCGAG 34255 Query 106288 ACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAAC 106347 |||||| ||||| | ||| || |||| ||| ||| | || || ||| ||| |||| Sbjct 34254 ACCTTGCACACCAAGACCGATGGGTCGGTGACGCTTGTTGGAA---CGCTCAGCTTCAAT 34198 Query 106348 G---GGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGAT 106404 | || || | || ||| |||| ||| | || | ||||| ||| | || Sbjct 34197 GACTGGGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGAC 34138 Query 106405 TTCATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCAT---TGAC-AT--ACTTTGG 106458 || || || || | | || | | | || ||| | || | || | | || Sbjct 34137 ATCGTGGAGCTTCTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGG 34078 Query 106459 AAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAAT 106518 | ||| || || || | |||||| |||||| |||||| | | |||||| | ||| Sbjct 34077 CAAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAAT 34018 Query 106519 TTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTT 106578 || |||||||||||| | ||| || || || | ||||| ||||| ||| ||| Sbjct 34017 CTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTT 33958 Query 106579 GCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGC 106638 ||| || |||||||| |||||| |||| | |||||||| || || | || |||||| || Sbjct 33957 GCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGC 33898 Query 106639 CTTCCACA-CATCGGCGGCTGGTACAATGGCGT---TGGCCCGTCCCTCCGCCTCGTACT 106694 | ||||| | || | | || | |||| | || || || || |||||||| Sbjct 33897 GTACCACAGCTTCTGTGCCTTG----ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACT 33842 Query 106695 TTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTG 106754 | ||||| | ||||||||| || || || | | ||| | ||| || | || | Sbjct 33841 TGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGG 33782 Query 106755 GACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCC 106814 | || | || ||||| | ||| |||||| || ||||||||||| || || || |||| Sbjct 33781 GGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCC 33722 Query 106815 ACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAAC 106873 | || | | || | || | | | | || ||||||| | || ||||| || || Sbjct 33721 AGAGAGCATAGAACAAGTCGCGTGCGCGGA-CCTCTTCCTTGCCGTGGTTCTTGCGCAAG 33663 Query 106874 TCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTT 106933 |||||||| | | ||| || |||||||||||||||| || | || | | || | Sbjct 33662 TCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACC---T 33606 Query 106934 CGACGC------CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATT 106987 ||||| ||| |||| | ||||| | || ||| ||| || || || ||||| Sbjct 33605 GGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATG 33546 Query 106988 GGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT--CA 107045 || || || || | ||| ||||||||| || ||| | | || || | || Sbjct 33545 GGGATGATGCCGTTGGATGTACCATTTGTACCGGCAAT------GTAACTGCCTGTTGCA 33492 Query 107046 C--AT-CA-TGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCC 107101 | || || |||| | | ||||| || || || ||| ||||| |||||| Sbjct 33491 CGGATGCAGTGGACATTGAGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTT 33432 Query 107102 GTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTG 107161 | || || | ||||| || | ||| ||||| ||||| | | || |||||||||| Sbjct 33431 TTGAGTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGAC 33372 Query 107162 GACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATA 107221 || | || || | || ||||| || ||||||||||| || | |||||| ||| | Sbjct 33371 GAGAGTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGT 33314 Query 107222 CCTTGG--GACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGC 107279 ||||| ||||| || ||||||||| | | | |||||||| || || || |||| Sbjct 33313 GCTTGGAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGC 33254 Query 107280 CGATGGCCACACGCATAAACATGTATTGGGGT 107311 | | || |||||||| | ||||| || ||| Sbjct 33253 CAACAGCGACACGCATGATCATGTGCTGCGGT 33222 >seq23 Length=690853 Score = 129 bits (142), Expect = 7e-25 Identities = 378/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 116986 TAGTCCCCAACTCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 117045 ||||| || || ||||||||||||||||||||||| ||| | || |||||| |||||| Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169 Query 117046 AAGTCAAATGGATTCTTCGCGT--TCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGAC 117103 |||||||||||||| | | || | || | || || || |||||| | Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCC--AAGAGAGACGAGGAGTC 89111 Query 117104 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGATTAC 117163 |||| | ||| | |||||||||||| ||| || | || ||||| | | | Sbjct 89110 GATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGGC 89051 Query 117164 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 117223 |||| || | ||| || ||| | | |||||||||||| || || | | |||| | | Sbjct 89050 ATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCTT 88991 Query 117224 GGATAGTTTCGGTAGTGGGTCTATTACGCAAA-GTCTTGAAGAGCTCCACGGCAAACTCC 117282 | | || | | || | || ||| | || | || || ||| || || Sbjct 88990 GTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAATCT 88932 Query 117283 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGA 117342 |||||||||||| || || || || || ||||| ||| || || ||||||||| Sbjct 88931 GTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGA 88872 Query 117343 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 117402 || |||||||| | |||| | || | | ||| || || ||||| ||||| ||||| ||| Sbjct 88871 CCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACA 88812 Query 117403 CACGCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACT--TTGTGT-CAAACCATTTC 117459 ||||| || | ||| ||| || |||| ||||| | || | ||| ||| | Sbjct 88811 GCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCCAGCGC 88755 Query 117460 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 117519 | |||||| | || || | || || || || | || | ||| || || || | ||| Sbjct 88754 AGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGC 88695 Query 117520 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 117554 | | || || | ||||| |||||| | ||||| Sbjct 88694 TGCCGTTGAGCTTGTTCCTTGATGTATGTATCAAT 88660 >seq2 Length=565986 Score = 104 bits (114), Expect = 3e-17 Identities = 247/368 (67%), Gaps = 13/368 (4%) Strand=Plus/Minus Query 9277 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9336 |||| || ||||||||||| | || ||||| | ||| ||| |||||||| || | Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613 Query 9337 CTGGCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9392 ||| || | |||||| || || |||||| | || ||||| ||||| | ||| Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553 Query 9393 ACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCC 9452 || || || ||| ||| | ||| || | |||| | ||||| || | | ||| Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493 Query 9453 ACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTAG 9510 ||||| |||||||| ||||| || | || | | || | || ||| || || | Sbjct 335492 ACACCGACAAACATTTCCACGAACTCTGAACCACTGACGCT--GAAGAAAGGTACGCCTG 335435 Query 9511 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9570 |||||| ||| | ||| || || || ||||| || ||||||||| ||| | || | Sbjct 335434 CTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAA 335375 Query 9571 GGGCACCCCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCAGGTTGCTTGAGAAA 9628 |||||| || || |||||||||||| |||| | || || |||| | |||||| || Sbjct 335374 TGGCACCTCGAGGGATCTTGGCGCCAAGCTTCTCA--TAGATCCCAGGCTCCTTGAGGAA 335317 Query 9629 ATCCACAA 9636 | |||| Sbjct 335316 CTTGACAA 335309 >seq11 Length=330268 Score = 91.5 bits (100), Expect = 2e-13 Identities = 201/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 169172 ATTTAGGATGAGACCCTTGATGTGAGAACCATCATTATCGGCATCTGTCATAATCATAAG 169231 ||| | |||||| || |||||||| || || || | ||| ||| ||||||||||| || Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976 Query 169232 ACGACCATAGCG-AAGT-TCAGAAACATCTTGGTAGTCTTTTCCTTGTTGAAGACCCAAG 169289 | |||| || || |||| | || | || | ||| | ||| || || || | ||| | Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGT-GTACTTTTTCCCATGCTGCAAACCGAGA 287034 Query 169290 ATCTTCTTGAGATCGTTGAACTCTTGGTTTGATGTGAGCTGTGCCACTGAAGCGTCGCGG 169349 ||| |||||| || | || || || | ||| || || ||| || || || Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094 Query 169350 ACATTCTTACACTTCCCACGGAGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAG 169409 ||||| |||| ||||| | || || || ||| ||||||| |||||||| || || Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154 Query 169410 AGACCCGCGACCGCAAGGGTTTTCGCTGAATCACCCTCCGTGACAATGAGGGTACA 169465 | || || | || || || || || ||||| || ||||| | ||||| ||||| Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589980475510560