Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_015326.1
Length=346754
Score E
Sequences producing significant alignments: (Bits) Value
seq43 170 4e-37
seq40 125 2e-23
>seq43
Length=605699
Score = 170 bits (188), Expect = 4e-37
Identities = 163/209 (78%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| || || |||||||| || ||||| || | || || ||
Sbjct 450670 ACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCA 450729
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || || || ||||| || |||||||| || |||||||||
Sbjct 450730 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGA 450789
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || ||||||||| ||||||||||| || ||| ||||| || |||| ||||||
Sbjct 450790 ATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTT 450849
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| |||||||| || ||||| | |||||
Sbjct 450850 CCAGTCAAAGTCTTAACGAAAATCTGCAT 450878
Score = 154 bits (170), Expect = 3e-32
Identities = 145/185 (78%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| || || || ||||| || ||||| || | ||||||||
Sbjct 451354 ACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCA 451413
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
||||||||||| ||||| || | || || ||||| || ||||| ||||| ||||| |||
Sbjct 451414 AGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGA 451473
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| |||||| || ||||||||||| || ||| || |||||||||| |||||
Sbjct 451474 ATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTG 451533
Query 195112 CCTGT 195116
|| ||
Sbjct 451534 CCAGT 451538
Score = 150 bits (166), Expect = 4e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987
||| || | ||| | || ||||| || ||||| ||||| ||||| | ||| | |||||
Sbjct 450438 CAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATC 450497
Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047
|| |||||||| || || ||||| || || || ||||| || ||||| ||||| |||||
Sbjct 450498 CTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTC 450557
Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107
|||||| || ||||||||| ||||||||||| || || || || || || | ||
Sbjct 450558 TTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGT 450617
Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|||||| |||| ||| || ||||| | ||||||
Sbjct 450618 CTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Score = 143 bits (158), Expect = 6e-29
Identities = 157/209 (75%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| ||||| ||||| || || || ||||| || || | ||| | || || ||
Sbjct 450898 ACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCA 450957
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || || || ||||| || || || ||||| ||||||||
Sbjct 450958 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGG 451017
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || ||||||||||| || || || ||||| |||| ||||||
Sbjct 451018 ATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTT 451077
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| ||||| || || ||||| | ||||||
Sbjct 451078 CCAGTCAACGTCTTGACGAAAATTTGCAT 451106
Score = 134 bits (148), Expect = 3e-26
Identities = 155/209 (74%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|||||||| || || ||||| || ||||||||||| ||||| | ||| | ||||| ||
Sbjct 451126 ACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCA 451185
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || || || || || || || || || |||||||| || ||||| |||
Sbjct 451186 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGA 451245
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
|| || |||||| || ||||||||||| || || || || || || | ||||||
Sbjct 451246 ATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTT 451305
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | ||| || || || | |||||
Sbjct 451306 CCAGTAAGAGTCTTGACAAAGATCTGCAT 451334
>seq40
Length=667070
Score = 125 bits (138), Expect = 2e-23
Identities = 153/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991
|| ||||| ||||| ||||| || || || ||||| || || || || | || || |||
Sbjct 1486 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCG 1427
Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051
|||||||| || || ||||| || || || ||||| || || |||||||| ||||| ||
Sbjct 1426 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 1367
Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111
||||| |||||| || || || ||||| || || || || ||||| | |||||
Sbjct 1366 ATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTG 1307
Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140
|| || | || || ||||| | ||||||
Sbjct 1306 CCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1109480974529748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |