Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq43 170 4e-37 seq40 125 2e-23 >seq43 Length=605699 Score = 170 bits (188), Expect = 4e-37 Identities = 163/209 (78%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || |||||||| || ||||| || | || || || Sbjct 450670 ACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCA 450729 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || || || ||||| || |||||||| || ||||||||| Sbjct 450730 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGA 450789 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| || ||| ||||| || |||| |||||| Sbjct 450790 ATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTT 450849 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||||||| || ||||| | ||||| Sbjct 450850 CCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 154 bits (170), Expect = 3e-32 Identities = 145/185 (78%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||| || ||||| || | |||||||| Sbjct 451354 ACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCA 451413 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||| || | || || ||||| || ||||| ||||| ||||| ||| Sbjct 451414 AGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCCTGA 451473 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| || ||||||||||| || ||| || |||||||||| ||||| Sbjct 451474 ATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTG 451533 Query 195112 CCTGT 195116 || || Sbjct 451534 CCAGT 451538 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| || | ||| | || ||||| || ||||| ||||| ||||| | ||| | ||||| Sbjct 450438 CAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATC 450497 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 || |||||||| || || ||||| || || || ||||| || ||||| ||||| ||||| Sbjct 450498 CTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTC 450557 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 |||||| || ||||||||| ||||||||||| || || || || || || | || Sbjct 450558 TTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGT 450617 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 |||||| |||| ||| || ||||| | |||||| Sbjct 450618 CTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||| ||||| || || || ||||| || || | ||| | || || || Sbjct 450898 ACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCA 450957 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || || || ||||| || || || ||||| |||||||| Sbjct 450958 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGG 451017 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||||||||| || || || ||||| |||| |||||| Sbjct 451018 ATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTT 451077 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || ||||| || || ||||| | |||||| Sbjct 451078 CCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| || || ||||| || ||||||||||| ||||| | ||| | ||||| || Sbjct 451126 ACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCCTCA 451185 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || || || || || || || || || |||||||| || ||||| ||| Sbjct 451186 AGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGA 451245 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || |||||| || ||||||||||| || || || || || || | |||||| Sbjct 451246 ATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTT 451305 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | ||| || || || | ||||| Sbjct 451306 CCAGTAAGAGTCTTGACAAAGATCTGCAT 451334 >seq40 Length=667070 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| || || || || | || || ||| Sbjct 1486 ACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCG 1427 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || || ||||| || || || ||||| || || |||||||| ||||| || Sbjct 1426 AGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGG 1367 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 ||||| |||||| || || || ||||| || || || || ||||| | ||||| Sbjct 1366 ATTTTCGACTTGACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTG 1307 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | |||||| Sbjct 1306 CCCGTGAGGGTCTTGACGAAGATTTGCAT 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109480974529748