Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq43 96.9 2e-15 >seq43 Length=605699 Score = 96.9 bits (106), Expect = 2e-15 Identities = 152/216 (70%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCA 34826 ||| |||||||| | ||| || ||||||||||| ||||| | |||| | || || Sbjct 450438 CAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAG--TGCGACCA 450495 Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886 || || ||||| ||||| ||||| || || || |||||||| | || | || |||||| Sbjct 450496 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTG 450555 Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 || |||||| |||||| | || | || | ||| || |||| || ||| Sbjct 450556 TCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATG 450615 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 || ||||| || |||||||| || || || |||||| Sbjct 450616 GTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCATA 450651 Score = 93.3 bits (102), Expect = 3e-14 Identities = 138/194 (71%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848 || |||||||| || ||||| | |||| | || |||| || ||||| || || |||| Sbjct 451144 TCCTTCTGAATATTGTAGTCGGCCAAAG--TGCGACCATCCTCAAGCTGCTTGCCAGCAA 451201 Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908 | || || || ||||| || | || | ||||||||||| |||||| ||||| Sbjct 451202 AAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACAT 451261 Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968 | || | || | |||||| |||| || ||||| ||||| || |||||||| | Sbjct 451262 TGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGA 451321 Query 34969 CAAAGATCTGCATA 34982 |||||||||||||| Sbjct 451322 CAAAGATCTGCATA 451335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324633425915232