Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq43 96.9 2e-15
>seq43
Length=605699
Score = 96.9 bits (106), Expect = 2e-15
Identities = 152/216 (70%), Gaps = 4/216 (2%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTC--CGAAAGGCTTCGTTCA 34826
||| |||||||| | ||| || ||||||||||| ||||| | |||| | || ||
Sbjct 450438 CAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAG--TGCGACCA 450495
Query 34827 TCATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTG 34886
|| || ||||| ||||| ||||| || || || |||||||| | || | || ||||||
Sbjct 450496 TCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTG 450555
Query 34887 TCGCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
|| |||||| |||||| | || | || | ||| || |||| || |||
Sbjct 450556 TCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATG 450615
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982
|| ||||| || |||||||| || || || ||||||
Sbjct 450616 GTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCATA 450651
Score = 93.3 bits (102), Expect = 3e-14
Identities = 138/194 (71%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCG--AAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAA 34848
|| |||||||| || ||||| | |||| | || |||| || ||||| || || ||||
Sbjct 451144 TCCTTCTGAATATTGTAGTCGGCCAAAG--TGCGACCATCCTCAAGCTGCTTGCCAGCAA 451201
Query 34849 ATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGG 34908
| || || || ||||| || | || | ||||||||||| |||||| |||||
Sbjct 451202 AAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCTTGACAT 451261
Query 34909 ATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
| || | || | |||||| |||| || ||||| ||||| || |||||||| |
Sbjct 451262 TGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAGTCTTGA 451321
Query 34969 CAAAGATCTGCATA 34982
||||||||||||||
Sbjct 451322 CAAAGATCTGCATA 451335
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324633425915232
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |