Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq43 116 4e-21 seq23 100 3e-16 >seq43 Length=605699 Score = 116 bits (128), Expect = 4e-21 Identities = 296/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 48105 TCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACAT 48164 ||||| || || || || ||||||||||| |||||||| | | | ||||||||| Sbjct 33848 TCGTACTTGGTGTACAAGGCTTCAAATTCATCGCCATACACCTCGTGCATACCAGGACAT 33789 Query 48165 TCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCT 48224 || || || ||||| | ||||| || ||| | | || | |||| || | ||| Sbjct 33788 TCGTTGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCA 33729 Query 48225 GGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCT 48283 || ||||| ||||| ||| || || || | | | | ||||| ||||| ||| | Sbjct 33728 GGGATCCAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTT 33670 Query 48284 TTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTAC 48343 | ||||| ||| | | || || || |||||||| || | || || || | | Sbjct 33669 GCGCAAGTCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGC 33610 Query 48344 ACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAA 48403 |||||| || || || || ||||| || | ||| |||||||| ||||| | || | | Sbjct 33609 ACCTGGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAG 33550 Query 48404 CATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCT 48463 ||| |||| || || || ||| ||||||| || || | ||| ||||| || | || | Sbjct 33549 CATGGGGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACG 33490 Query 48464 TAT--ATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGT 48521 || | | |||| | ||| || ||||| || | ||||| || | |||||| | Sbjct 33489 GATGCAGTGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTT 33432 Query 48522 TTAAGGGTATCATAAATTCCTTCTAT 48547 || || || || || || || || || Sbjct 33431 TTGAGTGTGTCGTAGATGCCATCGAT 33406 >seq23 Length=690853 Score = 100 bits (110), Expect = 3e-16 Identities = 288/442 (65%), Gaps = 6/442 (1%) Strand=Plus/Minus Query 18950 TAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAG 19009 |||||| | ||| || ||||| || || |||||||| | | || | ||||| Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 19010 AAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATC 19069 ||| || | || ||||| || || | || || | ||| || || || || || || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 19070 CAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCAT 19129 |||| || || || || || || || |||||||| || || | | || | ||| | Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 19130 CATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCT 19189 | | | |||||| ||||||||| || || || | || | || || ||||||| Sbjct 88774 CGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCT 88715 Query 19190 CTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATA 19249 | || | || || || | | || | | || || || | |||| ||| || | | Sbjct 88714 CGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGA 88655 Query 19250 AACTGTACATTTCTGAATGAATATTTTCTATAGCCAT---CTGAAATCCGTAAAAACATC 19306 ||| | ||||| || || ||||| ||||| ||| || || || || |||| Sbjct 88654 GGGAGTAGGTCTCTGAGTGGATGTTTTCC---GCCATGATCTGGAAGCCATAGAAGCATC 88598 Query 19307 TTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTC 19366 ||| |||| || || ||||| | | || | |||| |||||||||||| || || | Sbjct 88597 GTGCCTCTGGTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGC 88538 Query 19367 CATCACTAGCTGCAAAAAATGC 19388 ||||||| || ||||| || || Sbjct 88537 CATCACTGGCGGCAAAGAAAGC 88516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108490840160