Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq43 96.9 3e-14 seq24 91.5 1e-12 >seq43 Length=605699 Score = 96.9 bits (106), Expect = 3e-14 Identities = 158/223 (71%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGT--ACTTTCTTTGGTAATATTGTAATCAGCTAGAGTT 563313 ||||||||| ||||| || || || ||| | ||| |||||||| || || || || Sbjct 450660 GAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGG--ATATTGTAGTCTGCAAGCGTG 450717 Query 563314 CTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCT 563373 | || ||||| || || || |||||||| || | ||||| ||||| ||||| || Sbjct 450718 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCC 450777 Query 563374 TCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACA-TTCGAG 563432 || || |||||||| || || || ||||| || || | ||| | | |||||| Sbjct 450778 TCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGA-TGATTCGACTTCGAG 450836 Query 563433 AGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 |||| || || ||||| | ||| ||||||||||| |||||| Sbjct 450837 TGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCATA 450879 Score = 95.1 bits (104), Expect = 1e-13 Identities = 155/221 (70%), Gaps = 2/221 (1%) Strand=Plus/Plus Query 563256 GAGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCT 563315 ||||||||| ||||| || ||||| || || ||||||||| || || | ||| | Sbjct 451116 GAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCG 451175 Query 563316 TGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTC 563375 ||| ||||| || || || |||||||| || | ||||||||||| ||||| || || Sbjct 451176 ACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTC 451235 Query 563376 TTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGT-ACATTCGAGAG 563434 || || ||||| || || || ||||| || || | ||| | | ||||| | Sbjct 451236 CTTGTCCTGAATCTTGCTCTTGACATTGTCAATGGTGTCTG-ATGACTCAACCTCGAGTG 451294 Query 563435 TAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCATA 563475 | | || || ||||||||||| || || || || |||||| Sbjct 451295 TGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTGCATA 451335 Score = 87.8 bits (96), Expect = 1e-11 Identities = 132/185 (71%), Gaps = 2/185 (1%) Strand=Plus/Plus Query 563292 AATATTGTAATCAGCTAGAGTTCTTGAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCT 563351 ||| ||||| || || | ||| | ||| ||||| || ||||| ||||| || || | Sbjct 450468 AATGTTGTAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACG 450527 Query 563352 TTGCTGATCAGGAGGAATTCCTTCTTTATCTTGAATTTTTTGTTTTACTGCCTCAATTGT 563411 ||||| ||||| ||||| ||||| || |||||||| || || || ||||| || Sbjct 450528 CTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGT 450587 Query 563412 ATCAGTGTGAGTACAT-TCGAGAGTAACAGTTTTACCAGTAAGAGTTTTAACGAAAATTT 563470 || | ||| | | ||||| || | || || ||||| ||||| || |||||||||| Sbjct 450588 GTCTGA-TGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTT 450646 Query 563471 GCATA 563475 ||||| Sbjct 450647 GCATA 450651 >seq24 Length=98465 Score = 91.5 bits (100), Expect = 1e-12 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 550391 GTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACT 550450 || ||| | || || | ||||| || || || || || ||||| || |||||||| || Sbjct 57397 GTAACGAACGCTGTTGTCACTGTTCCTGCCTACTTCAACGACTCCCAGCGTCAAGCAACC 57338 Query 550451 AAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCT 550510 || ||||| || | ||||| || | |||||| | || || ||||| || ||||||||| Sbjct 57337 AAGGATGCCGGTCTCATTGCCGGTATGAATGTTTTGCGAATCATCAACGAGCCTACTGCT 57278 Query 550511 GCTGCACTTGCATATGGACTTGA 550533 ||||| ||||||| || || || Sbjct 57277 GCTGCTATTGCATACGGTCTCGA 57255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029293673081560