Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq43 248 2e-60 seq23 172 1e-37 >seq43 Length=605699 Score = 248 bits (274), Expect = 2e-60 Identities = 1014/1575 (64%), Gaps = 74/1575 (5%) Strand=Plus/Minus Query 212577 GCAGCCTTGGTGCGTAGATAGTACATGCCGGTCTTTAGGCCCTTGCCCCAGCCGTGCATG 212636 |||||| |||| || || ||||||||||| ||||| || ||||| ||| || | | | Sbjct 34964 GCAGCCATGGTACGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAG 34905 Query 212637 TGCATTGCTGTGAGTTTCTTCAGCTTAATATTCTGGTCATCCTCGTGGCCCAGATGTAGG 212696 ||||| | ||| | ||| | ||| ||| | | || ||||| | | Sbjct 34904 TGCATCGATGTAATTTTA-----CCGAAT------GTCGGCGCCTTG----AGATGCAAG 34860 Query 212697 TTCAGGGACTGACTCTGGTCTATGAATGGGGCCCTGTCAGCGGCCATGTCTATGATATCT 212756 || ||||| || ||| || || || | | | |||||| ||||| || || | || Sbjct 34859 TTGAGGGATTGCGACTGATCAATAAAGGCACCACGGTCAGCAGCCATATCGATCACCACT 34800 Query 212757 CTCTGGGAGAGCTCCCACACGGTCTTGAAGATTTCTTTGAGGTCCTCTGGGAAGCCGGGG 212816 | || ||||||||||| || |||||| ||| |||| || | |||| | ||| Sbjct 34799 TTTTGAGAGAGCTCCCATACAGTCTTGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGG 34740 Query 212817 ATGTTCTGCACAGACCCCCTGTGTATGGTCA--GCTGC-AGGCG-CATGTCCTCGTTCCA 212872 ||||| |||||||| || | || | || | ||| | | ||| | ||| ||| Sbjct 34739 ATGTTTTGCACAGAGCCACC----ATCGGCAATGATGCGATTCTTCATATTCTCTGACCA 34684 Query 212873 GAGGCCCCTGGTCTCCAGGCACTTGACCAGGTGAGGGTTGACTATCTGGAAGTCACCTGA 212932 ||| ||| | | || ||||| || |||||| || | |||||| ||||| | Sbjct 34683 GAGTCCCATCTCAACGAGATCCTTGAGCAACCAAGGGTTCACCACCTGGAACTCACCGGC 34624 Query 212933 GAGCACCCTCCTCTGGTAAAAGTTTGAAGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAG 212992 || || | | | ||||| ||| ||||||||||| | || || ||| ||||| Sbjct 34623 AAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAG 34564 Query 212993 AATCTGTGCAGTGCTGGCTGTGGGCATGGGAGC---CACCAGGAGACTGTTCCTCACTCC 213049 |||||||| ||| || |||||||| || || || |||| || ||| | | || Sbjct 34563 AATCTGTGACGTGGACGCAGTGGGCATCGGTGCACACAACAGG-GA--GTTGCGGATACC 34507 Query 213050 GTGCTCGCCGATGAGGCGCCGAAGCTCTGCCCAGTCCCATCTGCCAGACAGGTCCTCGTC 213109 |||| | || | ||| ||||||||||| || | ||| Sbjct 34506 ATGCTTTGCAATCTGCTCTTTGAGCGTCGCCCAGTCCCAGA-GCTTGGTGGGTG------ 34454 Query 213110 CTTCACGTTCCACATGTCAAACTGCAAGATGCCTTTGCTCACGGGGCTGCCCTGGTAAGA 213169 | || ||||||| |||| ||||||| | || | | || ||||| ||| | Sbjct 34453 --TGACATTCCACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCTCGTAGGT 34396 Query 213170 GGAGTAGGGGCCATGCTCCTTG-GCCAGCTCGCAGGACGCCTGCAGGGCAGCGTAGTAGA 213228 ||||| || || | || |||| |||||||| || || || | || ||| ||| ||||| Sbjct 34395 AGAGTATGGACCCT-CTTCTTGTGCCAGCTCACACGAGGCTTCAAGAGCACCGTGGTAGA 34337 Query 213229 TGGTTTCAAATATCTCCCTGTTGAGCTTCTTGGCCTCTGGGGACGTGAAGGGCATCATCA 213288 |||| ||||| || | |||| |||| ||||||||| || || ||| |||| | | | Sbjct 34336 TGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAGTCGAATGGCAGCTTAA 34277 Query 213289 -TGCGTTGGAACACATCAGCCAGCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGG 213347 ||| | || |||| || || || || || || | |||||||||| ||| | | | Sbjct 34276 GTGCCAAG-AAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGGTCGGTGACGCTTG 34218 Query 213348 TTAGACTTGGAGCACTC--CTCCAAGG----GGTAAAAGTTGCAGTCGATGATCTTGTTG 213401 || ||| | ||| || ||| | |||| ||||| ||||||||||||||| Sbjct 34217 TT------GGAACGCTCAGCTTCAATGACTGGGTAGTAGTTGACGTCGATGATCTTGTTC 34164 Query 213402 AGGTTGCGGGTGGCCACTTTGGTGACATGGGCCAGGTACTCGTGATTGAACACG----TA 213457 | |||||| | | || |||| ||||| | || | || | | | | ||| | Sbjct 34163 AAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGTAGACGGGTGTT 34104 Query 213458 GCCCCCGTCCTGCACA--AACTCAGGCAGGGCGATGCTGGCCAGGTTGCAAACGGCCACC 213515 | | | || | || |||| ||| ||| ||| || ||||| || |||||| Sbjct 34103 TCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGAGGCGAGATTGCAGACAGCCACC 34044 Query 213516 TCCTGAGAGTCTGTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCC 213575 || | | | | |||||| | |||||||| |||| ||||||||| |||||| || Sbjct 34043 TCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCTGCACTTGATGGTACCG 33984 Query 213576 AGGTTCTGGTGGTTTGACTTTGCGTTGGCAGAA-TCCTTGTAGAGCATGTAGGGGGACCC 213634 ||||||| ||||| ||||| ||| | |||| |||||||| |||||| |||| || Sbjct 33983 AGGTTCTTCTGGTTCGACTT-GCGGTTGCAGGCGTCCTTGTACAGCATGAAGGGATTGCC 33925 Query 213635 GGTCTCTAGCTGGGACACCAGTATCTGGCTCCAGAGGTACCTGGCCTTGACCACCCGCCT 213694 ||||| || | | | || || | ||| || | | ||||||| | | | Sbjct 33924 CGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGTGCCTTGATGGTCTTCAT 33865 Query 213695 GACAGCTCCGGGCGTAGCCTCGTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGAC 213754 ||| |||| | | |||||||| ||| | | | ||||| | ||| | || Sbjct 33864 GACCTTGCCGGCCTT---CTCGTACTTGGTGTACAAGGCTTCAAATTCATCGCCATACAC 33808 Query 213755 CCTGTCCAGTCCCGGACAGGATGCGGGACACATGAGGCTCCAGTCCCCGTCATCTCTGAC 213814 | || || || ||||| ||| |||||||| ||| || || | || || Sbjct 33807 CTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCACTCGCCATTCTCCTCCAC 33748 Query 213815 TCTCTGCATGAACAGGTCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTC 213874 | || |||||| || || |||| ||| || || ||||| ||| | | | ||| Sbjct 33747 ACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAAGTCGCGTGCGCGGACCTC 33688 Query 213875 GTCCACTCCAGAGTTTTTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTC 213934 ||| || ||| ||||||| || || ||| |||||||||| |||||||| ||||| Sbjct 33687 TTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTC 33628 Query 213935 CATGTAGATGGCAAAGGCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCAC 213991 ||||| || |||||||| || || | |||| || || ||||| || |||||| Sbjct 33627 AATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGT 33568 Query 213992 CATGTTGAAGATGCGCAGGACGGGTACCAGCCCGTTGGACTGT-CCGTTGGTTCCCGCTA 214050 ||||||||| ||||| | ||| | | |||||||| ||| || || || || || | Sbjct 33567 GTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGA-TGTACCATTTGTACCGGCAA 33509 Query 214051 TATACGAGCCGGAGGCCCTCAGGT--TGCTCATGGAGAGCCCTATGCCACCGGCGTACTT 214108 | || ||| | || | | | || ||| |||| || ||||||||||| ||| Sbjct 33508 TGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGA--CCAATGCCACCGGCTGTCTT 33451 Query 214109 GGAGATCATGGCGCA 214123 ||||||||||| || Sbjct 33450 AGAGATCATGGCACA 33436 >seq23 Length=690853 Score = 172 bits (190), Expect = 1e-37 Identities = 560/862 (65%), Gaps = 16/862 (2%) Strand=Plus/Minus Query 47840 TGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTCC 47899 |||||||| || || | |||||||||||||| ||||| || | | || ||||||||| Sbjct 89231 TGGTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCC 89172 Query 47900 ATGAAGAGGAAGGGGTTGGGTGTGTTATACACCCGTGTCAGGCCCATCTGTTCCAGCAGG 47959 || ||| || || ||| |||| ||| | | | | ||| | | || || Sbjct 89171 ATAAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGCCAAGAGAGACGAGGAGT 89112 Query 47960 TGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTA-TGAGGGA 48018 |||| ||||| | || ||||| | |||||| | || || || | | |||| Sbjct 89111 CGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGG 89052 Query 48019 CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTG 48078 || || | | | |||||| || ||| ||| |||| || ||||| | || | Sbjct 89051 CATGGT-AGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTC 88993 Query 48079 CTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTG-CTTGGCATAGAGCATGCAGGCAA 48137 | || | || ||| || ||||| || ||| || || |||| ||||| | Sbjct 88992 TTGTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACA-AGAGA---CAGGCGA 88937 Query 48138 AGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCA 48197 | || |||| | || ||||| || ||||||| | ||| ||| ||| || |||| Sbjct 88936 AATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCA 88877 Query 48198 TGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCT 48257 ||| || | || |||||||| || || | ||||| ||||||||||| ||||| |||| Sbjct 88876 TGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCT 88817 Query 48258 CCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGG 48317 | || || || || || || | | | | || | || | | ||||| |||||| Sbjct 88816 CGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCTGCAATCCAGC 88757 Query 48318 AAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCT 48377 || ||||||||||| || | ||||||||| || || ||||| || || |||||| | Sbjct 88756 GCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGT 88697 Query 48378 TCTTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAG 48434 || | | | || ||| | || || | |||| || | ||| |||| | Sbjct 88696 GCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAG---GGAGTAGGTCTCTG 88640 Query 48435 AGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCA 48494 |||| | || || ||||||||| || |||||| | ||||| || || | Sbjct 88639 AGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGGA 88580 Query 48495 CTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGA 48554 |||| ||||||| | ||| |||| ||| |||||||| || ||||| || ||||||| Sbjct 88579 CTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAGA 88520 Query 48555 AGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT---CCAGCCCT 48611 | || ||||| || | ||| ||| |||| || | |||| || |||| | | Sbjct 88519 AAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCGT 88460 Query 48612 GTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTTTGT 48671 | | ||| ||| ||||| | || || | ||||||||||| || ||| ||||||| Sbjct 88459 GCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTGT 88400 Query 48672 ACATGCCCCATATGTCCGGATA 48693 |||| ||| || || |||| Sbjct 88399 ACATTTGCCAAATCTCGTGATA 88378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931532287656960