Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq43 228 2e-54 seq23 156 8e-33 >seq43 Length=605699 Score = 228 bits (252), Expect = 2e-54 Identities = 757/1157 (65%), Gaps = 33/1157 (3%) Strand=Plus/Minus Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479 || ||| |||||||||||||||||||||| |||| || |||||||||||| || Sbjct 34352 AGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAG 34293 Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539 ||| |||| || | ||| | ||||| || || || || || | ||||||| Sbjct 34292 TCGAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATG 34233 Query 221540 GGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATC 221599 || | ||| | | |||||||| | ||||| || || || ||||||||||||| Sbjct 34232 GGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATGACTGGGTAGTAGTTGACGTCGATG 34173 Query 221600 AGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAAC 221659 | ||||| | ||| ||| | || || | || ||| ||||||| | | | | Sbjct 34172 ATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGTAG 34113 Query 221660 ACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGG 221719 || | | | || | | | || | || | | | ||||| | ||| || Sbjct 34112 ACGGGT--GTTTCTG-CGCGCATG---TCGATGAAGGTGGGCAAGGCAATGGAGGCGAGA 34059 Query 221720 TTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTGC 221777 || || || |||||||| || | || | |||| | ||||| ||||| | ||||| Sbjct 34058 TTGCAGACAGCCACCTCATCG--GGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGC 34001 Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837 ||||||||||||| || |||| || || || |||||||| ||| ||||||||||| | Sbjct 34000 TGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACA 33941 Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTG 221896 |||| |||||| ||| ||||| || ||| | ||||| || ||| || |||| | Sbjct 33940 GCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGT- 33882 Query 221897 GCGCTCACCGTCCTCTTGAC--TGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954 || | | ||| || |||| ||| ||| ||| || ||| ||| || | | Sbjct 33881 GCCTTGATGGTCTTCATGACCTTGC-----CGGCCTTCTCGTACTTGGTGTACAAGGCTT 33827 Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014 |||| | || || ||| |||||| || || ||||| | ||| ||||| || || Sbjct 33826 CAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACC 33767 Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074 | | || || | || | || ||||||||| || |||||||| || || | || | Sbjct 33766 ACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACA 33707 Query 222075 GATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132 || | || ||| | ||| ||| ||||| ||| || | || || | || |||| Sbjct 33706 AGTCGC--GTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAA 33649 Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192 ||||| |||||||| ||||| | || | || | || || || |||||||||||||| Sbjct 33648 GATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACC 33589 Query 222193 CTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251 || || | ||| | ||| | |||||||| || || | || | | ||||||| Sbjct 33588 TTGGTCGA-CATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530 Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCC-GGCCCTCAGGT-TACTGG-CAGACA 222308 || ||| || || || |||||| || ||| | | | | | | ||| || | Sbjct 33529 ATGTACCATTTGTACCGGCAATGTA---ACTGCCTGTTGCACGGATGCAGTGGACATTGA 33473 Query 222309 TGCCGATACCACCGGCGTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367 || || |||||||| ||| || ||||||||||| || | ||||| ||||| |||| Sbjct 33472 GACCAATGCCACCGGC-TGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATG 33414 Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427 || || || ||||| ||||| | | | || || |||||||| | || | |||| Sbjct 33413 CCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGC 33354 Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487 | || |||||| || || || || |||||||| |||| |||||| || | | Sbjct 33353 GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTG 33294 Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547 || ||||| | | | | | |||| || || ||||| | ||| | |||| | Sbjct 33293 TATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATC 33234 Query 222548 ATGTACTGGGGCCTCTC 222564 |||| ||| || ||||| Sbjct 33233 ATGTGCTGCGGTCTCTC 33217 >seq23 Length=690853 Score = 156 bits (172), Expect = 8e-33 Identities = 384/570 (67%), Gaps = 17/570 (3%) Strand=Plus/Plus Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533 || || ||| | |||||||| ||||| || || |||||||||||| |||||||| Sbjct 88384 GAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGGACCGCCGAGGAGATTGAC 88443 Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACGAGCAGCATTTTCTCAA 25592 || |||||||| || ||| |||| | | | | | ||| ||||| | | || ||| Sbjct 88444 CTCTCCAAGGACCTGCACGACTGGGA-GAACAAGCTCAACGACGACGAACGCTTCTTCAT 88502 Query 25593 GT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649 | |||| | || |||||||| ||| |||||| || || || || ||| || ||| Sbjct 88503 CTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTGTCAATGAAAATTTGCTCGA 88562 Query 25650 GAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708 | | ||| ||| ||||| || |||| | |||| || ||||| || |||||||| Sbjct 88563 GCGTTTCTCCAACGAAGTCCAAGTACCAG-AGGCACGATGCTTCTATGGCTTCCAGAT-- 88619 Query 25709 CCATCG---AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACA 25764 ||| | |||| | ||||| ||| || || || | ||| || ||||| | Sbjct 88620 -CATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCTCATTGAT-ACATACATCAAG 88677 Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824 || || | | | | || || | ||| |||||| || || |||||||| Sbjct 88678 GAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAA 88737 Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCT 25883 || || ||||| || ||||| ||| | | | |||| |||| ||| || Sbjct 88738 AAAGCAGACTGGGCACTGCGCTGGATTG-CAGACGACGAGTCTACCTTTGCACTGCGTCT 88796 Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943 || || ||||||||||| ||||| ||||||||| || ||||| || ||||||| || Sbjct 88797 TGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTG 88856 Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003 ||||||| || || |||||| || || |||| ||| ||||||||| | || Sbjct 88857 GCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGA 88916 Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033 |||||||||||||| |||||| ||||| || Sbjct 88917 CGAGGGTCTCCACACAGATTTCGCCTGTCT 88946 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844289135360