Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq43 228 2e-54
seq23 156 8e-33
>seq43
Length=605699
Score = 228 bits (252), Expect = 2e-54
Identities = 757/1157 (65%), Gaps = 33/1157 (3%)
Strand=Plus/Minus
Query 221420 AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGGAGAA 221479
|| ||| |||||||||||||||||||||| |||| || |||||||||||| ||
Sbjct 34352 AGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAG 34293
Query 221480 GTGAAGGGCATACGCAGCATCTGAAAGACGTCGGCCAGTCCCTGTACTCCGATACCGATG 221539
||| |||| || | ||| | ||||| || || || || || | |||||||
Sbjct 34292 TCGAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATG 34233
Query 221540 GGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTGACGTCGATC 221599
|| | ||| | | |||||||| | ||||| || || || |||||||||||||
Sbjct 34232 GGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATGACTGGGTAGTAGTTGACGTCGATG 34173
Query 221600 AGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGGTGATTGAAC 221659
| ||||| | ||| ||| | || || | || ||| ||||||| | | | |
Sbjct 34172 ATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGTAG 34113
Query 221660 ACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACGCTGGCCAGG 221719
|| | | | || | | | || | || | | | ||||| | ||| ||
Sbjct 34112 ACGGGT--GTTTCTG-CGCGCATG---TCGATGAAGGTGGGCAAGGCAATGGAGGCGAGA 34059
Query 221720 TTACACACGGCCACCTCGTCCTTGTTG--GTATACTGTATGATCTCTGTACAGAGGTTGC 221777
|| || || |||||||| || | || | |||| | ||||| ||||| | |||||
Sbjct 34058 TTGCAGACAGCCACCTCATCG--GGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGC 34001
Query 221778 TGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTTGTAGA 221837
||||||||||||| || |||| || || || |||||||| ||| ||||||||||| |
Sbjct 34000 TGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACA 33941
Query 221838 GCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAG-TTCTCTG 221896
|||| |||||| ||| ||||| || ||| | ||||| || ||| || |||| |
Sbjct 33940 GCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGT- 33882
Query 221897 GCGCTCACCGTCCTCTTGAC--TGCACCCTCGGTCTTTTCATACCCGGTATAGAGCATGT 221954
|| | | ||| || |||| ||| ||| ||| || ||| ||| || | |
Sbjct 33881 GCCTTGATGGTCTTCATGACCTTGC-----CGGCCTTCTCGTACTTGGTGTACAAGGCTT 33827
Query 221955 CAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAGACTCC 222014
|||| | || || ||| |||||| || || ||||| | ||| ||||| || ||
Sbjct 33826 CAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACC 33767
Query 222015 AGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGAAAGA 222074
| | || || | || | || ||||||||| || |||||||| || || | || |
Sbjct 33766 ACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACA 33707
Query 222075 GATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTCAAA 222132
|| | || ||| | ||| ||| ||||| ||| || | || || | || ||||
Sbjct 33706 AGTCGC--GTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAA 33649
Query 222133 AATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCCACC 222192
||||| |||||||| ||||| | || | || | || || || ||||||||||||||
Sbjct 33648 GATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACC 33589
Query 222193 CTGATCCACCATCCTCTCCAGAG-CGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTTGG 222251
|| || | ||| | ||| | |||||||| || || | || | | |||||||
Sbjct 33588 TTGGTCGA-CATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530
Query 222252 ATCGACCGTTGGTGCCCTTAATGTACGCACCGCC-GGCCCTCAGGT-TACTGG-CAGACA 222308
|| ||| || || || |||||| || ||| | | | | | | ||| || |
Sbjct 33529 ATGTACCATTTGTACCGGCAATGTA---ACTGCCTGTTGCACGGATGCAGTGGACATTGA 33473
Query 222309 TGCCGATACCACCGGCGTGT-TTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGATG 222367
|| || |||||||| ||| || ||||||||||| || | ||||| ||||| ||||
Sbjct 33472 GACCAATGCCACCGGC-TGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATG 33414
Query 222368 CCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGAGATTTGGTG 222427
|| || || ||||| ||||| | | | || || |||||||| | || | ||||
Sbjct 33413 CCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGC 33354
Query 222428 GAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGACATCAGATCG 222487
| || |||||| || || || || |||||||| |||| |||||| || | |
Sbjct 33353 GTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTG 33294
Query 222488 TACGTCTCTACGACTCTGGCGATGTTGTCCCCGTGAATCTGCATGGCGCATCTCATGTAC 222547
|| ||||| | | | | | |||| || || ||||| | ||| | |||| |
Sbjct 33293 TATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATC 33234
Query 222548 ATGTACTGGGGCCTCTC 222564
|||| ||| || |||||
Sbjct 33233 ATGTGCTGCGGTCTCTC 33217
>seq23
Length=690853
Score = 156 bits (172), Expect = 8e-33
Identities = 384/570 (67%), Gaps = 17/570 (3%)
Strand=Plus/Plus
Query 25474 GATATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGAT 25533
|| || ||| | |||||||| ||||| || || |||||||||||| ||||||||
Sbjct 88384 GAGATTTGGCAAATGTACAAAAAGGCAGAAGCATCCTTCTGGACCGCCGAGGAGATTGAC 88443
Query 25534 CTGGCCAAGGACATGGACGGCTGGTACGCTCTATC-CAAAGACGAGCAGCATTTTCTCAA 25592
|| |||||||| || ||| |||| | | | | | ||| ||||| | | || |||
Sbjct 88444 CTCTCCAAGGACCTGCACGACTGGGA-GAACAAGCTCAACGACGACGAACGCTTCTTCAT 88502
Query 25593 GT---ACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGA 25649
| |||| | || |||||||| ||| |||||| || || || || ||| || |||
Sbjct 88503 CTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGATGGCATTGTCAATGAAAATTTGCTCGA 88562
Query 25650 GAGATTCACCAGGGAAGTGCA-GTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGG 25708
| | ||| ||| ||||| || |||| | |||| || ||||| || ||||||||
Sbjct 88563 GCGTTTCTCCAACGAAGTCCAAGTACCAG-AGGCACGATGCTTCTATGGCTTCCAGAT-- 88619
Query 25709 CCATCG---AAAATGTGCACTCTGAGGTGTATGCCAAGCTTCT-GATGACGTACATTACA 25764
||| | |||| | ||||| ||| || || || | ||| || ||||| |
Sbjct 88620 -CATGGCGGAAAACATCCACTCAGAGACCTACTCCCTCCTCATTGAT-ACATACATCAAG 88677
Query 25765 GACGTCGCCGAGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGG 25824
|| || | | | | || || | ||| |||||| || || ||||||||
Sbjct 88678 GAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAA 88737
Query 25825 AAGGCGCGGTGGGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCT 25883
|| || ||||| || ||||| ||| | | | |||| |||| ||| ||
Sbjct 88738 AAAGCAGACTGGGCACTGCGCTGGATTG-CAGACGACGAGTCTACCTTTGCACTGCGTCT 88796
Query 25884 GGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTG 25943
|| || ||||||||||| ||||| ||||||||| || ||||| || ||||||| ||
Sbjct 88797 TGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTG 88856
Query 25944 GCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGA 26003
||||||| || || |||||| || || |||| ||| ||||||||| | ||
Sbjct 88857 GCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGA 88916
Query 26004 CGAGGGTCTCCACAGAGATTTTGCCTGCCT 26033
|||||||||||||| |||||| ||||| ||
Sbjct 88917 CGAGGGTCTCCACACAGATTTCGCCTGTCT 88946
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928844289135360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |