Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_020104.1
Length=1021348
Score E
Sequences producing significant alignments: (Bits) Value
seq43 109 4e-18
>seq43
Length=605699
Score = 109 bits (120), Expect = 4e-18
Identities = 157/219 (72%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
|| |||||||| ||||| || || || || || | ||| || || || || ||
Sbjct 450658 CGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTG 450717
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| | || ||||| ||||| ||||||||||| ||||| || || ||||| ||||| ||
Sbjct 450718 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCC 450777
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730
||||||||||||||||| ||||| ||||| || || | || | | ||| ||
Sbjct 450778 TCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGA-CTTCGAG 450836
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | ||||||||||||||| ||
Sbjct 450837 TGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTG 450875
Score = 105 bits (116), Expect = 4e-17
Identities = 157/220 (71%), Gaps = 2/220 (1%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
||| |||||||| ||||| || || || || || || ||| || || || | |||
Sbjct 451113 ACGGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGT 451172
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||| ||
Sbjct 451173 GCGACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCC 451232
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729
|||||||| |||||||| |||||| ||||| || || | || | || || |
Sbjct 451233 CTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAA-CCTCGA 451291
Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || || || |||||||| || || || ||
Sbjct 451292 GTGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTG 451331
Score = 104 bits (114), Expect = 2e-16
Identities = 117/154 (76%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676
||| ||||| |||||||||||||| || ||||| || || ||||| ||||| ||||||||
Sbjct 450495 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTT 450554
Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735
|||||||||||| ||||| ||||| || || | || | | || || || |
Sbjct 450555 GTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTA-CCTCGAGTGTGA 450613
Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
| || || || || |||||||| |||||||||||
Sbjct 450614 TGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTG 450647
Score = 100 bits (110), Expect = 2e-15
Identities = 155/219 (71%), Gaps = 2/219 (1%)
Strand=Plus/Plus
Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611
||||||||||| ||||| || || || || || | || || || || | |||
Sbjct 450886 CGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTG 450945
Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671
| || ||||| ||||| ||||||||||| ||||| || || ||||| || || |||
Sbjct 450946 CGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCT 451005
Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730
||||||||||| ||||| |||||| ||||| || || | || | | |||||
Sbjct 451006 TCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTA-CCTCAAG 451064
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769
||||| || || || || | ||||| |||||||||||
Sbjct 451065 TGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTG 451103
Score = 100 bits (110), Expect = 2e-15
Identities = 157/225 (70%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610
|||||||||||| ||||| || || || || || | || || || || || ||
Sbjct 451341 ACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGT 451400
Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670
| ||||||||| ||||| ||||| ||||| | ||| || || || || ||||| ||
Sbjct 451401 GCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCC 451460
Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730
||||||||| ||||| || |||||| ||||| || || | | | | |||||
Sbjct 451461 TTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAG 451520
Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACGA 480775
|||||| || || || || || ||||| || || || | ||| ||
Sbjct 451521 GGTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTAGAAGGA 451565
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3268177312626512
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |