Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq43 109 4e-18 >seq43 Length=605699 Score = 109 bits (120), Expect = 4e-18 Identities = 157/219 (72%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 || |||||||| ||||| || || || || || | ||| || || || || || Sbjct 450658 CGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTG 450717 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | | || ||||| ||||| ||||||||||| ||||| || || ||||| ||||| || Sbjct 450718 CGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCC 450777 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||||||||| ||||| ||||| || || | || | | ||| || Sbjct 450778 TCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCGA-CTTCGAG 450836 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||||||||||||| || Sbjct 450837 TGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTG 450875 Score = 105 bits (116), Expect = 4e-17 Identities = 157/220 (71%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| ||||| || || || || || || ||| || || || | ||| Sbjct 451113 ACGGAGACGGAGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGT 451172 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||| ||||| ||||| ||||||||||| ||||| || |||||||| ||||| || Sbjct 451173 GCGACCATCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCC 451232 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| |||||||| |||||| ||||| || || | || | || || | Sbjct 451233 CTCCTTGTCCTGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAA-CCTCGA 451291 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || || || |||||||| || || || || Sbjct 451292 GTGTGATGGTCTTTCCAGTAAGAGTCTTGACAAAGATCTG 451331 Score = 104 bits (114), Expect = 2e-16 Identities = 117/154 (76%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 480617 ATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCTTCCTT 480676 ||| ||||| |||||||||||||| || ||||| || || ||||| ||||| |||||||| Sbjct 450495 ATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTT 450554 Query 480677 GTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAGGGTAA 480735 |||||||||||| ||||| ||||| || || | || | | || || || | Sbjct 450555 GTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTA-CCTCGAGTGTGA 450613 Query 480736 TAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || |||||||| ||||||||||| Sbjct 450614 TGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTG 450647 Score = 100 bits (110), Expect = 2e-15 Identities = 155/219 (71%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 480552 CGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGTT 480611 ||||||||||| ||||| || || || || || | || || || || | ||| Sbjct 450886 CGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTG 450945 Query 480612 CTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCCT 480671 | || ||||| ||||| ||||||||||| ||||| || || ||||| || || ||| Sbjct 450946 CGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCT 451005 Query 480672 TCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAAG 480730 ||||||||||| ||||| |||||| ||||| || || | || | | ||||| Sbjct 451006 TCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCTA-CCTCAAG 451064 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || || || || | ||||| ||||||||||| Sbjct 451065 TGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTG 451103 Score = 100 bits (110), Expect = 2e-15 Identities = 157/225 (70%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||||||||| ||||| || || || || || | || || || || || || Sbjct 451341 ACGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGT 451400 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | ||||||||| ||||| ||||| ||||| | ||| || || || || ||||| || Sbjct 451401 GCGACCATCTTCAAGCTGCTTACCAGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCC 451460 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||| ||||| || |||||| ||||| || || | | | | ||||| Sbjct 451461 TTCCTTGTCCTGAATTTTCGACTTGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAG 451520 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGGAACGA 480775 |||||| || || || || || ||||| || || || | ||| || Sbjct 451521 GGTAATGGTCTTGCCAGTAAGTGTCTTGACAAAGATCTAGAAGGA 451565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268177312626512