Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq43 224 1e-53 seq23 129 7e-25 seq2 109 7e-19 seq11 96.9 4e-15 >seq43 Length=605699 Score = 224 bits (248), Expect = 1e-53 Identities = 1053/1647 (64%), Gaps = 59/1647 (4%) Strand=Plus/Plus Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271 || ||| ||||| ||||||| ||||| | ||||| || || || |||||||| | | Sbjct 33223 CCGCAGCACATGATCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAGGCC 33282 Query 75272 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329 | ||||||||| || ||||| ||||| | ||| |||||| | || ||||||| Sbjct 33283 ATTGAGACATACAACCTCATGTCTTCCAAGCACT--TCACACACGCATCGCCTACCCTCT 33340 Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389 |||| || ||||| || | || || | || |||||||||| || | | ||||| | Sbjct 33341 TCAACGCCGGTACGCCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATG 33400 Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449 |||| ||| | || ||||| | || || | |||||| ||||| ||| || | Sbjct 33401 ACTCGATCGATGGCATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCG 33460 Query 75450 GGGGTATTGGGATGCACATCCA-TG-AT--GTG--AGAGCCAATAAATCTCGTATTCGGG 75503 | || ||||| | | |||| || || ||| | || || | | ||| | Sbjct 33461 GTGGCATTGGTCTCAATGTCCACTGCATCCGTGCAACAGGCAGTTAC------ATTGCCG 33514 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | ||||||||| ||| | || || || || ||||| || || || ||| ||| || Sbjct 33515 GTACAAATGGTACATCCAACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCA 33574 Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAAC 75617 | ||||| | |||| || ||||| ||| | || | || | ||| | || | Sbjct 33575 GGTATGTCGACCAAGGTGGCAACAAGCGTCC--AGGTG-CCTTTGCTATTTACATTGAGC 33631 Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677 ||||||| || || ||| | | |||||||| || || ||||| || | ||||||| Sbjct 33632 CATGGCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGG 33691 Query 75678 CTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736 || | | | | || | || | | || ||||| || || || ||||||||||| || Sbjct 33692 -TCCGCGCACGCGACTTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTG 33750 Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796 |||||| ||| | ||||| || | || || || | || ||| | ||| | | Sbjct 33751 GAGGAGAATGGCGAGTGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTG 33810 Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856 || || || ||||||||| | ||||| ||||| || ||| || | | || | Sbjct 33811 TATGGCGATGAATTTGAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAG 33870 Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915 || | | || | | || | | ||| | ||||||||| | | || || ||||| || | Sbjct 33871 ACCAT-CAAGGCACAGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAA 33929 Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975 || | ||||| |||||||| || || ||| ||| ||||| ||||| | || || Sbjct 33930 TCCCTTCATGCTGTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTAC 33989 Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035 |||||| || || | || || || ||| | |||||| | | |||||| ||| Sbjct 33990 CATCAAGTGCAGCAACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGC 34049 Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT--AT-GTCA---ATGAAGAGACTCG 76089 ||| |||||| | || || || ||| | || | | || | || | ||| || | Sbjct 34050 TGTCTGCAATCTCGCCTCCATTGCCTTGCCCACCTTCATCGACATGCGCGCAGAAACACC 34109 Query 76090 CACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCG 76149 | | || | | || || || || || | ||| ||||| | || | ||| Sbjct 34110 CGTCTACGACTTCAAGAAGCTCCACGATGTCGCCAAGGTTGTTGCTCGCAACTTGAACAA 34169 Query 76150 AGTCATTGACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACA 76206 |||| ||| || | || || | |||| ||| ||| || || | ||| || Sbjct 34170 GATCATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCG---TTCCAACAAGCGTCA 34226 Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG---TGCCGCTA 76263 | |||| || ||| | ||||| ||||||||||| |||| || || | | ||| Sbjct 34227 CCGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTT--CTTGGCACTTAAGCTG 34284 Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323 | |||| || || || ||||||||| |||| | |||||||| ||||| || || Sbjct 34285 C-CATTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCA 34343 Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383 || | || || || ||||| |||| ||| | ||| | || || | || Sbjct 34344 CGGTGCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGA 34403 Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGA----AACCA 76439 ||| || || || || || || | | |||| ||| ||| |||| || | |||| Sbjct 34404 GGGCTCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGT-GGAATGTCACACCCACCA 34462 Query 76440 AGCTCAACTACGACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 76497 |||| || ||||||| ||||| || | || ||| || | ||| | || || Sbjct 34463 AGCT---CTGGGACTGGGCGACGCTCAAAGAGCAGATTGCAA--AGCATGGTATCCGCAA 34517 Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557 | || ||| ||||| ||||| || || ||||| |||| || ||||| ||||| Sbjct 34518 CTCCCTGTTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTGGGTTTCAATGA 34577 Query 76558 ATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGT 76617 ||||||||| || ||||| | ||||| ||| | | | ||| || |||||||| Sbjct 34578 ATGCTTTGAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCCGGTGAGTTCCA 34637 Query 76618 CATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATAT 76677 | || ||| | |||| || ||| |||| || |||||||| || |||| Sbjct 34638 GGTGGTGAACCCTTGGTTGCTCAAGGATCTCGTTGAGATGGGACTCTGGTCAGAGAATAT 34697 Query 76678 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737 |||| ||| ||| | | ||||| || | ||||| ||| || | ||||| | || Sbjct 34698 GAAGAATCGCATCATTGCCGATGGTGGCTCTGTGCAAAACATCCCAAACATCCCTGCAGA 34757 Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGC 76797 | || |||||| || || ||||| || |||| || || || ||||| Sbjct 34758 GACGAAAGCCCTCTACAAGACTGTATGGGAGCTCTCTCAAAAAGTGGTGATCGATATGGC 34817 Query 76798 CGCAGATCGTGGTCGCTTCATTGATCA 76824 || || |||||| ||| |||||||| Sbjct 34818 TGCTGACCGTGGTGCCTTTATTGATCA 34844 >seq23 Length=690853 Score = 129 bits (142), Expect = 7e-25 Identities = 378/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Plus Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007 ||||| | |||||| ||||| | || || | |||| | || || || ||| | || Sbjct 88660 ATTGATACATACATCAAGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGACA 88719 Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTG-ACACAA--AGTCT 65064 | || || || || | || || | |||||| || ||| ||| | || | ||||| Sbjct 88720 ATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGACGACGAGTCT 88779 Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124 |||| || ||| ||| | || ||||| ||| ||||| ||||| ||||| || Sbjct 88780 A---CCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGC 88836 Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184 || ||| | | || | |||| | |||||||| ||||||||||| || || ||| Sbjct 88837 TCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGC 88896 Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG 65244 ||||| || || || || || |||||||||||| || || ||| || || | || Sbjct 88897 AATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCC-TGTCTCTTGTTTAG 88955 Query 65245 AC-TTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303 | ||| || | || | | || | || | |||| | | || || ||||| Sbjct 88956 TCACTTGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCATTACTGAAGCTGTTGA 89015 Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363 ||||||| | | ||| || ||| | || ||||| | | ||||| || | | Sbjct 89016 GATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCCCCTTATTGGGTATCAATGCAAA 89075 Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCC 65423 | ||| |||||||||||| | ||| | ||||| |||||| || || | Sbjct 89076 GCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTT--GGCAAC 89133 Query 65424 ACCCATTTGGA--ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481 | | || | || | | |||||||||||||||||||| |||||| || | ||| Sbjct 89134 AAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCACTCGCTGGC 89193 Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516 ||||||||||||||||||||||| || || ||||| Sbjct 89194 AAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 89228 >seq2 Length=565986 Score = 109 bits (120), Expect = 7e-19 Identities = 290/437 (66%), Gaps = 11/437 (3%) Strand=Plus/Plus Query 175163 CTGAACAGGAGATTAAAACCCGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATG 175222 ||||| ||| || |||||| |||| ||||||| || || | || ||||| | Sbjct 335237 CTGAAACGGACATCAAAACCAAGTTCAAGGATGTTGCTGGTGCAGATGAAGCGAAAGAGG 335296 Query 175223 AACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAG--TGGTGC 175280 | || || |||| | || |||||| | || | || ||| |||| ||| || Sbjct 335297 AGATTATGGAATTTGTCAAGTTCCTCAAGGAGCCTGGGATCTATGA--GAAGCTTGGCGC 335354 Query 175281 CAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGC 175340 ||||||||| ||||| ||| |||| | ||| ||||||||| |||||||| || || || Sbjct 335355 CAAGATCCCTCGAGGTGCCATTCTTTCCGGTCCGCCAGGTACAGGAAAGACACTGCTAGC 335414 Query 175341 CCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAACTTTG 175399 ||| | || |||||| || || || ||| | ||| | | || || | || | Sbjct 335415 AAAAGCAACTGCTGGTGAAGCAGGCGTACCTTTC-TTCAGCGTCAGTGGTTCAGAGTTCG 335473 Query 175400 TGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG 175459 |||| |||||||| ||||||||| | | || ||||| | |||| | || ||| Sbjct 335474 TGGAAATGTTTGTCGGTGTGGGTCCTTCTCGAGTGCGCGACTTGTTTGCCAATGCGCGCA 335533 Query 175460 AAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCG 175519 | ||| ||| || || ||||| | ||||| ||||| || | || ||| || | Sbjct 335534 AGAATGCACCGTGCATCGTCTTTGTCGATGAAATTGACGCTATTGGAAAGGCGCGTGGTC 335593 Query 175520 CTGGTGG----TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575 |||||| | || |||| || || || | ||| |||| | || || || ||| Sbjct 335594 GTGGTGGTCAATTTGGCAGC-AACGATGAACGTGAATCAACACTCAACCAGCTGCTCGTG 335652 Query 175576 GAGATGGATGGCTTTGA 175592 ||||||||||| || || Sbjct 335653 GAGATGGATGGATTCGA 335669 >seq11 Length=330268 Score = 96.9 bits (106), Expect = 4e-15 Identities = 202/296 (68%), Gaps = 4/296 (1%) Strand=Plus/Minus Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666 ||||| ||||| | || || || ||||| || || || ||||| |||| || | ||| Sbjct 287210 TGTACACTCATCCTGACGGAAGGAGATTCCGCCAAGACGCTCGCCATTGCTGGCATGTCT 287151 Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGG 13726 || ||||| || ||||||| ||||||||||| | || || || | ||||| || Sbjct 287150 GTTGTTGGACGAGATCACTTTGGTGTGTTCCCCTTGCGTGGAAAGTTGCTCAATGTGCGA 287091 Query 13727 GACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTT 13786 || || | | || || ||| | || || || | || |||||| ||| || Sbjct 287090 GATGCAGCAGCTGCTCAAATCAGTGCCAATGTCGAAATCCAAAATATCAAGACGATTCTC 287031 Query 13787 GGTCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGA-ACTT-CGCTATGGTCGTCTTA 13844 ||| | || || || ||| | || || || | || | |||| || || |||| ||| | Sbjct 287030 GGTTTGCAGCATGGGAAAAAGTA-CACGA-GCGTCAAAGACTTGCGATACGGTCATCTCA 286973 Query 13845 TGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAAT 13900 |||||||||| ||| ||| | || || || |||||||| || |||||| | ||| Sbjct 286972 TGATTATGACTGATCAAGATCACGACGGCTCGCACATCAAAGGACTCATCATCAAT 286917 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596569271886720