Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq43 224 1e-53
seq23 129 7e-25
seq2 109 7e-19
seq11 96.9 4e-15
>seq43
Length=605699
Score = 224 bits (248), Expect = 1e-53
Identities = 1053/1647 (64%), Gaps = 59/1647 (4%)
Strand=Plus/Plus
Query 75212 CCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGTC 75271
|| ||| ||||| ||||||| ||||| | ||||| || || || |||||||| | |
Sbjct 33223 CCGCAGCACATGATCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAGGCC 33282
Query 75272 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 75329
| ||||||||| || ||||| ||||| | ||| |||||| | || |||||||
Sbjct 33283 ATTGAGACATACAACCTCATGTCTTCCAAGCACT--TCACACACGCATCGCCTACCCTCT 33340
Query 75330 TCAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 75389
|||| || ||||| || | || || | || |||||||||| || | | ||||| |
Sbjct 33341 TCAACGCCGGTACGCCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATG 33400
Query 75390 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 75449
|||| ||| | || ||||| | || || | |||||| ||||| ||| || |
Sbjct 33401 ACTCGATCGATGGCATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCG 33460
Query 75450 GGGGTATTGGGATGCACATCCA-TG-AT--GTG--AGAGCCAATAAATCTCGTATTCGGG 75503
| || ||||| | | |||| || || ||| | || || | | ||| |
Sbjct 33461 GTGGCATTGGTCTCAATGTCCACTGCATCCGTGCAACAGGCAGTTAC------ATTGCCG 33514
Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563
| ||||||||| ||| | || || || || ||||| || || || ||| ||| ||
Sbjct 33515 GTACAAATGGTACATCCAACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCA 33574
Query 75564 GCTATGTAAATCAAGCGGG------GCGTCGCAAGGGGTCCATCGCGGTCTACTTGGAAC 75617
| ||||| | |||| || ||||| ||| | || | || | ||| | || |
Sbjct 33575 GGTATGTCGACCAAGGTGGCAACAAGCGTCC--AGGTG-CCTTTGCTATTTACATTGAGC 33631
Query 75618 CATGGCATGCCGATATCATGGAGTTCCTTGAGTTACGACTCAACCAAGGTGACGAAGAGG 75677
||||||| || || ||| | | |||||||| || || ||||| || | |||||||
Sbjct 33632 CATGGCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGG 33691
Query 75678 CTCGGTGTA-GAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTT 75736
|| | | | | || | || | | || ||||| || || || ||||||||||| ||
Sbjct 33692 -TCCGCGCACGCGACTTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTG 33750
Query 75737 GAGGAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCG 75796
|||||| ||| | ||||| || | || || || | || ||| | ||| | |
Sbjct 33751 GAGGAGAATGGCGAGTGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTG 33810
Query 75797 GTGGGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCG 75856
|| || || ||||||||| | ||||| ||||| || ||| || | | || |
Sbjct 33811 TATGGCGATGAATTTGAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAG 33870
Query 75857 ACTGTACCAGCCGCCGATG-TTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAAC 75915
|| | | || | | || | | ||| | ||||||||| | | || || ||||| || |
Sbjct 33871 ACCAT-CAAGGCACAGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAA 33929
Query 75916 ACCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAAC 75975
|| | ||||| |||||||| || || ||| ||| ||||| ||||| | || ||
Sbjct 33930 TCCCTTCATGCTGTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTAC 33989
Query 75976 AATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGC 76035
|||||| || || | || || || ||| | |||||| | | |||||| |||
Sbjct 33990 CATCAAGTGCAGCAACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGC 34049
Query 76036 TGTTTGCAATTTGGCATCAATCGCCCTTCCAAAGT--AT-GTCA---ATGAAGAGACTCG 76089
||| |||||| | || || || ||| | || | | || | || | ||| || |
Sbjct 34050 TGTCTGCAATCTCGCCTCCATTGCCTTGCCCACCTTCATCGACATGCGCGCAGAAACACC 34109
Query 76090 CACTTTTGATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCG 76149
| | || | | || || || || || | ||| ||||| | || | |||
Sbjct 34110 CGTCTACGACTTCAAGAAGCTCCACGATGTCGCCAAGGTTGTTGCTCGCAACTTGAACAA 34169
Query 76150 AGTCATTGACAGAAATTTTTATCC---CGTTGAGACTGCGCGAAAGTCTAATATGCGACA 76206
|||| ||| || | || || | |||| ||| ||| || || | ||| ||
Sbjct 34170 GATCATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCG---TTCCAACAAGCGTCA 34226
Query 76207 CAGACCTATTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTG---TGCCGCTA 76263
| |||| || ||| | ||||| ||||||||||| |||| || || | | |||
Sbjct 34227 CCGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTT--CTTGGCACTTAAGCTG 34284
Query 76264 CGCATTTGATTCAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCA 76323
| |||| || || || ||||||||| |||| | |||||||| ||||| || ||
Sbjct 34285 C-CATTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCA 34343
Query 76324 CGCATCCCTGGAGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGA 76383
|| | || || || ||||| |||| ||| | ||| | || || | ||
Sbjct 34344 CGGTGCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGA 34403
Query 76384 GGGTTCTCCCGCGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGA----AACCA 76439
||| || || || || || || | | |||| ||| ||| |||| || | ||||
Sbjct 34404 GGGCTCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGT-GGAATGTCACACCCACCA 34462
Query 76440 AGCTCAACTACGACTGGGATGTTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAA 76497
|||| || ||||||| ||||| || | || ||| || | ||| | || ||
Sbjct 34463 AGCT---CTGGGACTGGGCGACGCTCAAAGAGCAGATTGCAA--AGCATGGTATCCGCAA 34517
Query 76498 CAGTCTTTTGATGGCACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 76557
| || ||| ||||| ||||| || || ||||| |||| || ||||| |||||
Sbjct 34518 CTCCCTGTTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTGGGTTTCAATGA 34577
Query 76558 ATGCTTTGAACCATACACAACAAACATCTACCTGAGAAGAACCCTCGCAGGTGAGTTTGT 76617
||||||||| || ||||| | ||||| ||| | | | ||| || ||||||||
Sbjct 34578 ATGCTTTGAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCCGGTGAGTTCCA 34637
Query 76618 CATTGTCAACAAGCACCTCGTCAATGACCTCAAGAAGATTGGTCTCTGGTCCAAGGATAT 76677
| || ||| | |||| || ||| |||| || |||||||| || ||||
Sbjct 34638 GGTGGTGAACCCTTGGTTGCTCAAGGATCTCGTTGAGATGGGACTCTGGTCAGAGAATAT 34697
Query 76678 GAAGGATCTCATGGTGAAAGCGGGTGGTTCCATTCAAAATATCTCAGATATCCCAGATGA 76737
|||| ||| ||| | | ||||| || | ||||| ||| || | ||||| | ||
Sbjct 34698 GAAGAATCGCATCATTGCCGATGGTGGCTCTGTGCAAAACATCCCAAACATCCCTGCAGA 34757
Query 76738 TATCAAGAATCTCTACCGCACAGTGTGGGAAATCAAGATGAAAGATGTCATTGACATGGC 76797
| || |||||| || || ||||| || |||| || || || |||||
Sbjct 34758 GACGAAAGCCCTCTACAAGACTGTATGGGAGCTCTCTCAAAAAGTGGTGATCGATATGGC 34817
Query 76798 CGCAGATCGTGGTCGCTTCATTGATCA 76824
|| || |||||| ||| ||||||||
Sbjct 34818 TGCTGACCGTGGTGCCTTTATTGATCA 34844
>seq23
Length=690853
Score = 129 bits (142), Expect = 7e-25
Identities = 378/575 (66%), Gaps = 12/575 (2%)
Strand=Plus/Plus
Query 64948 ATTGACAAATACATTAAGGATGGATCTGAAAAGAAGCAGTTATTTGAAGCCATCCAAACT 65007
||||| | |||||| ||||| | || || | |||| | || || || ||| | ||
Sbjct 88660 ATTGATACATACATCAAGGAACAAGCTCAACGGCAGCACCTCTTCGATGCAATCGAGACA 88719
Query 65008 GTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTG-ACACAA--AGTCT 65064
| || || || || | || || | |||||| || ||| ||| | || | |||||
Sbjct 88720 ATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGATTGCAGACGACGAGTCT 88779
Query 65065 CGCTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGG 65124
|||| || ||| ||| | || ||||| ||| ||||| ||||| ||||| ||
Sbjct 88780 A---CCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTTTTTCTCTGGC 88836
Query 65125 TCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCA 65184
|| ||| | | || | |||| | |||||||| ||||||||||| || || |||
Sbjct 88837 TCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACTCACCTTTAGC 88896
Query 65185 AATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCCGTGGAGCTCTTCAAG 65244
||||| || || || || || |||||||||||| || || ||| || || | ||
Sbjct 88897 AATGAGCTCATCTCTCGTGACGAGGGTCTCCACACAGATTTCGCC-TGTCTCTTGTTTAG 88955
Query 65245 AC-TTTGCGTAATAGACCCACTACCGAAACTATCCACGCCATCGTGAAAGAGGCGGTTGA 65303
| ||| || | || | | || | || | |||| | | || || |||||
Sbjct 88956 TCACTTGAAGAACAAGCCTTCAAAGCAACAGGTACAAGACATCATTACTGAAGCTGTTGA 89015
Query 65304 GATTGAGAAAGGGTTCATCTTGGACGCACTCCCATGTAATCTCATCGGTATGAACTCTGA 65363
||||||| | | ||| || ||| | || ||||| | | ||||| || | |
Sbjct 89016 GATTGAGCAGGCTTTCCTCACAGACTCCCTACCATGCCCCTTATTGGGTATCAATGCAAA 89075
Query 65364 GAAGATGTCCGAGTACATTGAGTATGTGTCGGATCGTCTCCTCAAACAAGTTGGGGTGCC 65423
| ||| |||||||||||| | ||| | ||||| |||||| || || |
Sbjct 89076 GCTCATGCGCGAGTACATTGAATTTGTCGCTGATCGACTCCTCGTCTCTCTT--GGCAAC 89133
Query 65424 ACCCATTTGGA--ACGCGAAGAATCCATTTGACTTTATGGAAAACATTAGCCTTGATGGG 65481
| | || | || | | |||||||||||||||||||| |||||| || | |||
Sbjct 89134 AAAAAGTTCTATCACACCAGCAATCCATTTGACTTTATGGAGAACATTTCACTCGCTGGC 89193
Query 65482 AAGACCAACTTCTTTGAGAAGCGAGTTGGGGACTA 65516
||||||||||||||||||||||| || || |||||
Sbjct 89194 AAGACCAACTTCTTTGAGAAGCGTGTCGGTGACTA 89228
>seq2
Length=565986
Score = 109 bits (120), Expect = 7e-19
Identities = 290/437 (66%), Gaps = 11/437 (3%)
Strand=Plus/Plus
Query 175163 CTGAACAGGAGATTAAAACCCGCTTCAGTGATGTTGAGGGGATTGACGCCGCCAAAGATG 175222
||||| ||| || |||||| |||| ||||||| || || | || ||||| |
Sbjct 335237 CTGAAACGGACATCAAAACCAAGTTCAAGGATGTTGCTGGTGCAGATGAAGCGAAAGAGG 335296
Query 175223 AACTTGAAGAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTTGGAAG--TGGTGC 175280
| || || |||| | || |||||| | || | || ||| |||| ||| ||
Sbjct 335297 AGATTATGGAATTTGTCAAGTTCCTCAAGGAGCCTGGGATCTATGA--GAAGCTTGGCGC 335354
Query 175281 CAAGATCCCCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGC 175340
||||||||| ||||| ||| |||| | ||| ||||||||| |||||||| || || ||
Sbjct 335355 CAAGATCCCTCGAGGTGCCATTCTTTCCGGTCCGCCAGGTACAGGAAAGACACTGCTAGC 335414
Query 175341 CCGAGCCATCGCGGGTGAATCAAATGTCCCATTCATCCAGTG-CTCTGCCGCAAACTTTG 175399
||| | || |||||| || || || ||| | ||| | | || || | || |
Sbjct 335415 AAAAGCAACTGCTGGTGAAGCAGGCGTACCTTTC-TTCAGCGTCAGTGGTTCAGAGTTCG 335473
Query 175400 TGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCG 175459
|||| |||||||| ||||||||| | | || ||||| | |||| | || |||
Sbjct 335474 TGGAAATGTTTGTCGGTGTGGGTCCTTCTCGAGTGCGCGACTTGTTTGCCAATGCGCGCA 335533
Query 175460 AAAATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCG 175519
| ||| ||| || || ||||| | ||||| ||||| || | || ||| || |
Sbjct 335534 AGAATGCACCGTGCATCGTCTTTGTCGATGAAATTGACGCTATTGGAAAGGCGCGTGGTC 335593
Query 175520 CTGGTGG----TATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACC 175575
|||||| | || |||| || || || | ||| |||| | || || || |||
Sbjct 335594 GTGGTGGTCAATTTGGCAGC-AACGATGAACGTGAATCAACACTCAACCAGCTGCTCGTG 335652
Query 175576 GAGATGGATGGCTTTGA 175592
||||||||||| || ||
Sbjct 335653 GAGATGGATGGATTCGA 335669
>seq11
Length=330268
Score = 96.9 bits (106), Expect = 4e-15
Identities = 202/296 (68%), Gaps = 4/296 (1%)
Strand=Plus/Minus
Query 13607 TGTACTCTCATTGTCACAGAGGGTGATTCGGCTAAAACCCTCGCGGTTGCGGGTCTCTCT 13666
||||| ||||| | || || || ||||| || || || ||||| |||| || | |||
Sbjct 287210 TGTACACTCATCCTGACGGAAGGAGATTCCGCCAAGACGCTCGCCATTGCTGGCATGTCT 287151
Query 13667 GTCGTTGGTCGTGATCACTACGGTGTGTTCCCACTTCGCGGTAAATGTAAGAATGTTCGG 13726
|| ||||| || ||||||| ||||||||||| | || || || | ||||| ||
Sbjct 287150 GTTGTTGGACGAGATCACTTTGGTGTGTTCCCCTTGCGTGGAAAGTTGCTCAATGTGCGA 287091
Query 13727 GACGCTTCGGTGGCACAGCTCACATCAAACCAGGAGTTCAACGATCTCAAGAAGATCCTT 13786
|| || | | || || ||| | || || || | || |||||| ||| ||
Sbjct 287090 GATGCAGCAGCTGCTCAAATCAGTGCCAATGTCGAAATCCAAAATATCAAGACGATTCTC 287031
Query 13787 GGTCTTCAACAAGGAAAAGACTACCAAGATGTTTCTGA-ACTT-CGCTATGGTCGTCTTA 13844
||| | || || || ||| | || || || | || | |||| || || |||| ||| |
Sbjct 287030 GGTTTGCAGCATGGGAAAAAGTA-CACGA-GCGTCAAAGACTTGCGATACGGTCATCTCA 286973
Query 13845 TGATTATGACAGATGCCGATAATGATGGTTCTCACATCAAGGGTCTCATCCTAAAT 13900
|||||||||| ||| ||| | || || || |||||||| || |||||| | |||
Sbjct 286972 TGATTATGACTGATCAAGATCACGACGGCTCGCACATCAAAGGACTCATCATCAAT 286917
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596569271886720
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