Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq43 109 1e-18 >seq43 Length=605699 Score = 109 bits (120), Expect = 1e-18 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | ||| || | || | || | ||| | ||| || || || || ||| Sbjct 450877 ATACCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 450936 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | |||| || |||| || | || || ||||||||||| | | ||| ||||||||| Sbjct 450937 GCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGT 450996 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || ||||| || ||||| || || | || ||||| || || ||||| || ||| Sbjct 450997 GGGATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCT 451056 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || |||||||| || ||||| || || || | ||| || ||||| Sbjct 451057 ACCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106 Score = 104 bits (114), Expect = 4e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899 |||||||| | || || | || | || | ||| | ||| || ||||| || ||| Sbjct 450649 ATACCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCT 450708 Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959 | | | || |||| || | || || ||||||||||| | | ||| ||||||||| Sbjct 450709 GCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGT 450768 Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019 || || || || || ||||| || || | || || || || || ||||| ||||| Sbjct 450769 GGAATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCG 450828 Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 ||||| || |||||||| || ||||| || || |||| ||| |||||||| Sbjct 450829 ACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878 Score = 86.0 bits (94), Expect = 1e-11 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902 || || | ||| || || || || || || || | ||| || ||| || || || | Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483 Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962 |||| || | || || | || || |||||||| || | | ||| ||||||||||| Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543 Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022 || ||||| || ||||| || || | || || || || || ||||| || ||||| Sbjct 450544 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACC 450603 Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069 || || || ||||| || ||||| | || || | ||| || ||||| Sbjct 450604 TCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 905135502175200