Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq43 109 1e-18
>seq43
Length=605699
Score = 109 bits (120), Expect = 1e-18
Identities = 162/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | ||| || | || | || | ||| | ||| || || || || |||
Sbjct 450877 ATACCACCGCGAAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCT 450936
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| |||| || |||| || | || || ||||||||||| | | ||| |||||||||
Sbjct 450937 GCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGT 450996
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || ||||| || ||||| || || | || ||||| || || ||||| || |||
Sbjct 450997 GGGATACCTTCCTTGTCTTGGATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCT 451056
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || |||||||| || ||||| || || || | ||| || |||||
Sbjct 451057 ACCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGACGAAAATTTGCAT 451106
Score = 104 bits (114), Expect = 4e-17
Identities = 161/230 (70%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|||||||| | || || | || | || | ||| | ||| || ||||| || |||
Sbjct 450649 ATACCACCGCGGAGACGGAGCACAAGGTGGAGAGTTGACTCCTTCTGGATATTGTAGTCT 450708
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | | || |||| || | || || ||||||||||| | | ||| |||||||||
Sbjct 450709 GCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGGTCAGGT 450768
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || || || || ||||| || || | || || || || || ||||| |||||
Sbjct 450769 GGAATGCCCTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGATTCG 450828
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
||||| || |||||||| || ||||| || || |||| ||| ||||||||
Sbjct 450829 ACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAACGAAAATCTGCAT 450878
Score = 86.0 bits (94), Expect = 1e-11
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 171843 CCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCTGAT 171902
|| || | ||| || || || || || || || | ||| || ||| || || || |
Sbjct 450424 CCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTGTAGTCGGCC 450483
Query 171903 AAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGTGGT 171962
|||| || | || || | || || |||||||| || | | ||| |||||||||||
Sbjct 450484 AAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGA 450543
Query 171963 ATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCTACT 172022
|| ||||| || ||||| || || | || || || || || ||||| || |||||
Sbjct 450544 ATACCTTCCTTGTCTTGAATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACC 450603
Query 172023 TCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCAT 172069
|| || || ||||| || ||||| | || || | ||| || |||||
Sbjct 450604 TCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 905135502175200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |