Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_021312.1
Length=459984
Score E
Sequences producing significant alignments: (Bits) Value
seq14 114 4e-20
>seq14
Length=253719
Score = 114 bits (126), Expect = 4e-20
Identities = 169/236 (72%), Gaps = 4/236 (2%)
Strand=Plus/Minus
Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642
||||| | |||||||||||||||||| || | || || || ||||||||||| ||
Sbjct 132879 CTTGACAAGACGACGCTGAATATAACCTGTCTCGGCAGTCTTGACGGCTGTATCAATCAG 132820
Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATA 302700
||| ||||||| |||| ||||||||||| | |||| ||| || | || | ||
Sbjct 132819 ACCTTCACGACCGGCCATGGCATGGAAGAAGAATTCTTGTGGT-GTCAAACCACGCAGGT 132761
Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760
|| || |||| || || ||||||| |||||| || | ||| ||| |||||||| |||
Sbjct 132760 AA-GAATTCTCCACAAATCCACGCGACTCGGGTGAGTAGTCATCCTTTGTAAAGTGCGGC 132702
Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816
| || | | || |||| || || || |||||||| || || | ||||| ||
Sbjct 132701 AACGTGCGGAACTTGAAGCCATAGGGAATTCGCTTTCCTTCCACCATTTGCTGACC 132646
Score = 102 bits (112), Expect = 2e-16
Identities = 155/219 (71%), Gaps = 4/219 (2%)
Strand=Plus/Minus
Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483
||| || |||| | ||| ||||| ||||| ||| | | || ||||| ||| | ||
Sbjct 151526 ACAGACGTGGAGACGGTAGGCATCCGATGCATCAAACAAACGTTCCTTGAGGAATCCAGC 151467
Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543
|||| || |||||||| |||||||||||||| ||||| || || || |||||||||||
Sbjct 151466 AACACCATGAGAAATCATGCAATCACGCTCCATCTCACCAAATCGCAGTCCACCATCGCG 151407
Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAG--CGGCTA 251601
| | ||| || ||||||| || ||||| | | || || | ||| || |
Sbjct 151406 CGAACGACCTTCCACAGGCTGTCGTGTGAGGATCTGGACGGGGCC--TCGAGCACGCGCA 151349
Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640
|| ||| || | |||| |||||| ||||||||||||
Sbjct 151348 TGAATCTTGTCGTCCACCAAATGCTTAAGACGCTGGTAG 151310
Score = 87.8 bits (96), Expect = 5e-12
Identities = 198/295 (67%), Gaps = 2/295 (1%)
Strand=Plus/Minus
Query 252390 ATCCTCCTGATTATAACCAGAATGACTCATAATGGCTACAATAACTTGCTCGCCAGATGG 252449
||| ||||||||||||||||| | | || ||| || ||||| | | || |||| ||
Sbjct 150542 ATCTTCCTGATTATAACCAGAGTAGCACAGAATAGCGACAATGGCGTTCTGTCCAGCAGG 150483
Query 252450 AATGGTATTG-AGTTTGATAATATCCATAAGACGAGTATCAACAAGCGGTCTCATCGGGT 252508
| | | | | | ||||| | ||||| || || | ||||| | ||||
Sbjct 150482 CA-GCTCTCGGAATTTGAGATACTCCATCGATCGCGTTGTGGCCAGCGGCTTTTGTGGGT 150424
Query 252509 AAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATACCAA 252568
|| | || | || || | ||||||| | | ||| ||||| | | ||| || |
Sbjct 150423 AATAGAGGATATTCGCCATGGTATCCATACGGACTTGATAGTTTGTTAAAAACACGCCCA 150364
Query 252569 GCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGA 252628
|| ||||| ||||||||| || |||||||||| ||||||||||||| || ||||
Sbjct 150363 TTGCTTGCTTACCCATAGCAGATTGATAAGTATTTCGCGGAGACTGATTGTGATCTGGGA 150304
Query 252629 AAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683
| |||||| ||||| || ||| | || | ||||| ||||| ||||||||
Sbjct 150303 AGGGAATGATGGATGCGCAAATACCCAGAATCATACTTGGATGAATCTCACAGTG 150249
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1471816770262828
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |