Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq14 114 4e-20 >seq14 Length=253719 Score = 114 bits (126), Expect = 4e-20 Identities = 169/236 (72%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 302583 CTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAG 302642 ||||| | |||||||||||||||||| || | || || || ||||||||||| || Sbjct 132879 CTTGACAAGACGACGCTGAATATAACCTGTCTCGGCAGTCTTGACGGCTGTATCAATCAG 132820 Query 302643 ACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT--AGCCCCCCAATA 302700 ||| ||||||| |||| ||||||||||| | |||| ||| || | || | || Sbjct 132819 ACCTTCACGACCGGCCATGGCATGGAAGAAGAATTCTTGTGGT-GTCAAACCACGCAGGT 132761 Query 302701 AAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGC 302760 || || |||| || || ||||||| |||||| || | ||| ||| |||||||| ||| Sbjct 132760 AA-GAATTCTCCACAAATCCACGCGACTCGGGTGAGTAGTCATCCTTTGTAAAGTGCGGC 132702 Query 302761 AGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 | || | | || |||| || || || |||||||| || || | ||||| || Sbjct 132701 AACGTGCGGAACTTGAAGCCATAGGGAATTCGCTTTCCTTCCACCATTTGCTGACC 132646 Score = 102 bits (112), Expect = 2e-16 Identities = 155/219 (71%), Gaps = 4/219 (2%) Strand=Plus/Minus Query 251424 ACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTGGTGAAGCGAGA 251483 ||| || |||| | ||| ||||| ||||| ||| | | || ||||| ||| | || Sbjct 151526 ACAGACGTGGAGACGGTAGGCATCCGATGCATCAAACAAACGTTCCTTGAGGAATCCAGC 151467 Query 251484 TGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCG 251543 |||| || |||||||| |||||||||||||| ||||| || || || ||||||||||| Sbjct 151466 AACACCATGAGAAATCATGCAATCACGCTCCATCTCACCAAATCGCAGTCCACCATCGCG 151407 Query 251544 AGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAG--CGGCTA 251601 | | ||| || ||||||| || ||||| | | || || | ||| || | Sbjct 151406 CGAACGACCTTCCACAGGCTGTCGTGTGAGGATCTGGACGGGGCC--TCGAGCACGCGCA 151349 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAG 251640 || ||| || | |||| |||||| |||||||||||| Sbjct 151348 TGAATCTTGTCGTCCACCAAATGCTTAAGACGCTGGTAG 151310 Score = 87.8 bits (96), Expect = 5e-12 Identities = 198/295 (67%), Gaps = 2/295 (1%) Strand=Plus/Minus Query 252390 ATCCTCCTGATTATAACCAGAATGACTCATAATGGCTACAATAACTTGCTCGCCAGATGG 252449 ||| ||||||||||||||||| | | || ||| || ||||| | | || |||| || Sbjct 150542 ATCTTCCTGATTATAACCAGAGTAGCACAGAATAGCGACAATGGCGTTCTGTCCAGCAGG 150483 Query 252450 AATGGTATTG-AGTTTGATAATATCCATAAGACGAGTATCAACAAGCGGTCTCATCGGGT 252508 | | | | | | ||||| | ||||| || || | ||||| | |||| Sbjct 150482 CA-GCTCTCGGAATTTGAGATACTCCATCGATCGCGTTGTGGCCAGCGGCTTTTGTGGGT 150424 Query 252509 AAGATAGAACATATGCTGTCTTATCCATCCTATTATCATAATTTGTAACATACATACCAA 252568 || | || | || || | ||||||| | | ||| ||||| | | ||| || | Sbjct 150423 AATAGAGGATATTCGCCATGGTATCCATACGGACTTGATAGTTTGTTAAAAACACGCCCA 150364 Query 252569 GCGCCTGCTTTCCCATAGCACTCTGGTAAGTATTTCTGGGAGACTGATTGTTTTCCGGGA 252628 || ||||| ||||||||| || |||||||||| ||||||||||||| || |||| Sbjct 150363 TTGCTTGCTTACCCATAGCAGATTGATAAGTATTTCGCGGAGACTGATTGTGATCTGGGA 150304 Query 252629 AAGGAATGCATGATGCTACAACACCGAAGATAGTGCTTGGGTGAATTTCACAGTG 252683 | |||||| ||||| || ||| | || | ||||| ||||| |||||||| Sbjct 150303 AGGGAATGATGGATGCGCAAATACCCAGAATCATACTTGGATGAATCTCACAGTG 150249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471816770262828