Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq43 138 1e-26
seq23 136 5e-26
seq6 114 2e-19
seq44 107 2e-17
>seq43
Length=605699
Score = 138 bits (152), Expect = 1e-26
Identities = 186/259 (72%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125
|||||||| || | || |||| ||| ||||| || |||||||| | || |||||||||
Sbjct 33587 TGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGAT 33528
Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185
|| || || || || | ||| ||| | || || | ||| | | ||
Sbjct 33527 GTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCA 33468
Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245
||||| ||||| | ||| ||||| | || ||| |||||| |||||||||||||| |||
Sbjct 33467 ATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCG 33408
Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305
|||||||| ||||||| || || ||||| |||||| ||| |||| | ||| |||
Sbjct 33407 ATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCG 33348
Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324
||||||||||| || ||||
Sbjct 33347 GCGTTGAAGAGGGTAGGCG 33329
>seq23
Length=690853
Score = 136 bits (150), Expect = 5e-26
Identities = 219/314 (70%), Gaps = 3/314 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||| || |||||||||||| || ||| | |||||| ||||||
Sbjct 88640 GAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGG 88581
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|| || || ||| || || || || || || ||||| || |||||||| ||
Sbjct 88580 ACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAG 88521
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCAGTGG 869809
||||| |||||||| ||| ||| ||| ||||||||| ||||| | |||||| |
Sbjct 88520 AAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCG 88461
Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869
||| | |||||| | ||||||||||||||||| || || || |||||||||
Sbjct 88460 TGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTG 88401
Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929
||||| | ||| | | || || ||| ||||||||||| ||||| || ||| |||
Sbjct 88400 TACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGACGAAGCGTTTCTTGTTTTCG 88341
Query 869930 CGCAACAGGGGTTC 869943
| ||||||||
Sbjct 88340 GCGAGGAGGGGTTC 88327
Score = 136 bits (150), Expect = 5e-26
Identities = 205/288 (71%), Gaps = 9/288 (3%)
Strand=Plus/Minus
Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238
||| ||||| ||| ||| | || |||||||||| ||| || |||||||| || |||||
Sbjct 88923 ACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACCACGCTT 88864
Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298
||||||||||||||||| | ||| ||| ||||||||||| |||||||| || |||||
Sbjct 88863 CTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGCAGCAAA 88804
Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TG--ATCCACTTCATCGC 869355
| | || ||| |||||||| || ||| | || || ||||| || ||
Sbjct 88803 AGCCACAAGACGCAGTGCAAAGGT----AG--ACTCGTCGTCTGCAATCCAGCGCAGTGC 88750
Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415
|||||| || |||| | | | |||| | || ||||| || |||||||| | |
Sbjct 88749 CCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGCTGCCG 88690
Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463
|| || | ||||||| || || || || ||||| || ||||||||
Sbjct 88689 TTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTC 88642
>seq6
Length=440545
Score = 114 bits (126), Expect = 2e-19
Identities = 129/173 (75%), Gaps = 0/173 (0%)
Strand=Plus/Minus
Query 1592120 GACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTG 1592179
||||| ||| ||||||| | |||| | || || ||| | || |||||| |
Sbjct 386456 GACATGTCGGAGTGGGACCAAAAGTTCATGGCAGTGGACCAGGAGATGCTTTTTGAGATT 386397
Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239
|| | || ||||||||| | ||||| |||||| ||||||| ||| |||||| ||||
Sbjct 386396 ATTTTGGCTGCCAACTACATGGACATTAAGCCTTTGCTCGACTGTGGCTGCAAGACTGTC 386337
Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292
||||| ||||||||||| ||| | ||||| ||||| |||||||| || |||||
Sbjct 386336 GCCAATATGATCAAGGGAAAGACACCCGATGAGATTCGCAAGACTTTCAACAT 386284
>seq44
Length=579512
Score = 107 bits (118), Expect = 2e-17
Identities = 154/217 (71%), Gaps = 0/217 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| |||| || || || | | ||| || || || | |||||||||||||||| | ||
Sbjct 33715 GCTTGGCGAGCTCTCCTGGGAGGATGAGACGGACAGATGTCTGGATCTCGCGCGAGGAGA 33774
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || |||||| || || || | ||||| | | ||| ||| || | |
Sbjct 33775 TGGTTGACTTCTTGTTGTAGGCAGCGAGCTTGGATGCCTCAGAGGCGACGCGCTCAAAGA 33834
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||||||| ||||| | || ||||| | |||| |||||| || ||| ||||
Sbjct 33835 TGTCGTTGACAAATGAGTTGAGGATGGACATGGCCTTGCCGGAGATACCAGTGTCTGGGT 33894
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559
| ||||||||||| |||||||||||| | || |||||
Sbjct 33895 GGACCTGCTTGAGGACCTTGTAGATGTAAGAAGAGTA 33931
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6107135589153948
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |