Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq43 138 1e-26 seq23 136 5e-26 seq6 114 2e-19 seq44 107 2e-17 >seq43 Length=605699 Score = 138 bits (152), Expect = 1e-26 Identities = 186/259 (72%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 1630066 TGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGAC 1630125 |||||||| || | || |||| ||| ||||| || |||||||| | || ||||||||| Sbjct 33587 TGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGAT 33528 Query 1630126 TCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCCG 1630185 || || || || || | ||| ||| | || || | ||| | | || Sbjct 33527 GTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCA 33468 Query 1630186 ATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTCG 1630245 ||||| ||||| | ||| ||||| | || ||| |||||| |||||||||||||| ||| Sbjct 33467 ATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCG 33408 Query 1630246 ATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCCG 1630305 |||||||| ||||||| || || ||||| |||||| ||| |||| | ||| ||| Sbjct 33407 ATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCG 33348 Query 1630306 GCGTTGAAGAGCGTGGGCG 1630324 ||||||||||| || |||| Sbjct 33347 GCGTTGAAGAGGGTAGGCG 33329 >seq23 Length=690853 Score = 136 bits (150), Expect = 5e-26 Identities = 219/314 (70%), Gaps = 3/314 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||| || |||||||||||| || ||| | |||||| |||||| Sbjct 88640 GAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTGGTACTTGG 88581 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 || || || ||| || || || || || || ||||| || |||||||| || Sbjct 88580 ACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGGCGGCAAAG 88521 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGA---CACCCAGTGG 869809 ||||| |||||||| ||| ||| ||| ||||||||| ||||| | |||||| | Sbjct 88520 AAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCTCCCAGTCG 88461 Query 869810 ACGGTGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTG 869869 ||| | |||||| | ||||||||||||||||| || || || ||||||||| Sbjct 88460 TGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTGCCTTTTTG 88401 Query 869870 TACATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTTGTCG 869929 ||||| | ||| | | || || ||| ||||||||||| ||||| || ||| ||| Sbjct 88400 TACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGACGAAGCGTTTCTTGTTTTCG 88341 Query 869930 CGCAACAGGGGTTC 869943 | |||||||| Sbjct 88340 GCGAGGAGGGGTTC 88327 Score = 136 bits (150), Expect = 5e-26 Identities = 205/288 (71%), Gaps = 9/288 (3%) Strand=Plus/Minus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| ||||| ||| ||| | || |||||||||| ||| || |||||||| || ||||| Sbjct 88923 ACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACCACGCTT 88864 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||||||||||| | ||| ||| ||||||||||| |||||||| || ||||| Sbjct 88863 CTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGCAGCAAA 88804 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT-TG--ATCCACTTCATCGC 869355 | | || ||| |||||||| || ||| | || || ||||| || || Sbjct 88803 AGCCACAAGACGCAGTGCAAAGGT----AG--ACTCGTCGTCTGCAATCCAGCGCAGTGC 88750 Query 869356 CCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 869415 |||||| || |||| | | | |||| | || ||||| || |||||||| | | Sbjct 88749 CCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGCTGCCG 88690 Query 869416 TTCGGCCGGGTCCTTGACATAGGTGTCGATCAGGAGCGAATAGGTCTC 869463 || || | ||||||| || || || || ||||| || |||||||| Sbjct 88689 TTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTC 88642 >seq6 Length=440545 Score = 114 bits (126), Expect = 2e-19 Identities = 129/173 (75%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 1592120 GACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACCCTCTTTGAGTTG 1592179 ||||| ||| ||||||| | |||| | || || ||| | || |||||| | Sbjct 386456 GACATGTCGGAGTGGGACCAAAAGTTCATGGCAGTGGACCAGGAGATGCTTTTTGAGATT 386397 Query 1592180 ATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTG 1592239 || | || ||||||||| | ||||| |||||| ||||||| ||| |||||| |||| Sbjct 386396 ATTTTGGCTGCCAACTACATGGACATTAAGCCTTTGCTCGACTGTGGCTGCAAGACTGTC 386337 Query 1592240 GCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACAT 1592292 ||||| ||||||||||| ||| | ||||| ||||| |||||||| || ||||| Sbjct 386336 GCCAATATGATCAAGGGAAAGACACCCGATGAGATTCGCAAGACTTTCAACAT 386284 >seq44 Length=579512 Score = 107 bits (118), Expect = 2e-17 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||| || || || | | ||| || || || | |||||||||||||||| | || Sbjct 33715 GCTTGGCGAGCTCTCCTGGGAGGATGAGACGGACAGATGTCTGGATCTCGCGCGAGGAGA 33774 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || || || | ||||| | | ||| ||| || | | Sbjct 33775 TGGTTGACTTCTTGTTGTAGGCAGCGAGCTTGGATGCCTCAGAGGCGACGCGCTCAAAGA 33834 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||||||| ||||| | || ||||| | |||| |||||| || ||| |||| Sbjct 33835 TGTCGTTGACAAATGAGTTGAGGATGGACATGGCCTTGCCGGAGATACCAGTGTCTGGGT 33894 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||| |||||||||||| | || ||||| Sbjct 33895 GGACCTGCTTGAGGACCTTGTAGATGTAAGAAGAGTA 33931 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107135589153948