Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_021923.1
Length=140633
Score E
Sequences producing significant alignments: (Bits) Value
seq43 156 4e-33
>seq43
Length=605699
Score = 156 bits (172), Expect = 4e-33
Identities = 960/1522 (63%), Gaps = 74/1522 (5%)
Strand=Plus/Minus
Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567
||||| || |||||||| | || ||||| |||||||||| | ||| | ||||||||
Sbjct 34640 ACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAG 34581
Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627
|||| ||| ||||||||||| | ||||| ||| || ||||| || ||| ||
Sbjct 34580 CATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCACACAACAGG 34521
Query 138628 GAATTCCGTAAACCGTGAAGCTTG--ATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685
|| || || | ||| || ||| || | || ||||||| || ||||||||| | |
Sbjct 34520 GAGTTGCGGATACCATG--CTTTGCAATCTGCTCTTTGAGCGTCGCCCAGTCCCAGAGCT 34463
Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745
| | ||| | ||||||| || ||||| || | |||| | || || ||| |
Sbjct 34462 TGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCT 34403
Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805
|||| | | |||| ||| ||||| |||| ||| || || || ||||| |
Sbjct 34402 CGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAGGCTTCAAGAGCACCGT 34343
Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865
||| || || || || || || ||| |||||||| ||| | ||||
Sbjct 34342 GGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAGTCGAATGGCA 34283
Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925
|| | ||| || ||||| || |||||||| || | |||| || || || |
Sbjct 34282 GCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGGTCGGTGAC 34223
Query 138926 GCAGATTTG-ACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTG 138981
|| || | ||||| | ||||| || || || ||||| || |||||||| |||
Sbjct 34222 GCTTGTTGGAACGCT----CAGCTTCAATGACTGGGTAGTAGTTGACGTCGATGATCTTG 34167
Query 138982 TTTAAATTTCGCACGACCACCTTAG-----TCGT----ATGCTTTAA-TCGTTCAAAATC 139031
|| || || || | || ||||| | |||| | ||| || |||| |
Sbjct 34166 TTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGTAGACGGGT 34107
Query 139032 GTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTAT 139091
|| | ||| | | ||||| || | || | ||| | | ||| ||||| |
Sbjct 34106 GTTTCTGCGCGC-ATGTCGATGA--AGGTGGGCAA-------GGC---AATGGAGGCGAG 34060
Query 139092 GTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACT 139151
||||| || ||||| || ||||| | ||| |||||||| |||| |||||| || ||
Sbjct 34059 ATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCT 34000
Query 139152 ACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAG 139211
|||||||| ||||| | || | || || || ||||| || || || ||||| ||
Sbjct 33999 GCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAG 33940
Query 139212 CATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGT-CCCTAG 139270
||| | || |||| || || ||| | ||| | ||| | | || || ||
Sbjct 33939 CATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAAT-------AGC--GTACCACAG 33889
Query 139271 CTTGTAT---TTGACGCACGTAAAG---TT--CGTCGCGCTCGTACTTTTCGTAGAGTTC 139322
||| | | |||| | | | | | || || | ||||||||| ||| | |
Sbjct 33888 CTTCTGTGCCTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGC 33829
Query 139323 GTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGA 139382
|| ||| || || || | || | | | |||| | || || |||||||||||
Sbjct 33828 TTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGA 33769
Query 139383 CCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAG 139442
||| |||| ||| ||| || ||| ||||||| ||||| || ||||| | ||| | |
Sbjct 33768 CCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAA 33709
Query 139443 CAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAA 139502
||| ||||| || |||||| || ||| || || |||||| ||||
Sbjct 33708 CAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAA 33649
Query 139503 AACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACC 139559
| ||| ||||||||||| || | || || || | || ||| || ||||||||
Sbjct 33648 GATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACC 33589
Query 139560 TTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGC 139619
||| ||||| | | ||| || ||||| || |||| ||| || | ||| | |
Sbjct 33588 TTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGA 33529
Query 139620 TGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATG 139677
||| || || || | ||| ||| |||| || |||| | || |||||||
Sbjct 33528 TGTACCATTTGTAC--CGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGA 33471
Query 139678 CCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT--AATGTCTCGTATATAC 139735
|| || || ||| | || || || | ||| || | | ||| ||||| || |
Sbjct 33470 CCAATGCCACCGGCTGTCTTAGAGAT--CATGGCACACGTTTTGAGTGTGTCGTAGATGC 33413
Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTT--T 139793
| || ||| |||| ||| ||||| || ||||| ||||| ||||| || |||
Sbjct 33412 CATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGG--GTTGGG 33355
Query 139794 CGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTT---CGACATCAA 139850
||| ||||| || || ||||| ||||| ||||| || || ||||| |
Sbjct 33354 CGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAA---GTGCTTGGAAGACATGAG 33298
Query 139851 TTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCAT 139910
| ||| || || ||||| | |||| || || || || || |||| ||| |||||
Sbjct 33297 GTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCAT 33238
Query 139911 CAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTC 139970
| ||| || || | || || || || || ||||| || |||| |||
Sbjct 33237 GATCATGTGCTGCGGTCTCTCTGCAACAGCACCATCGATACGCAACAAATAAGAACGCTC 33178
Query 139971 TAGGGTCTTGTAGCCAAAGTAC 139992
|| |||||| |||||||||||
Sbjct 33177 GAGCGTCTTGAAGCCAAAGTAC 33156
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | || || || || || || || || || ||||| ||||| | |
Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || ||||| |||||||| ||||| || || || || ||
Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | |||||||| || || ||||| |||||| | | || | || || |||
Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
||||| ||||| || ||| | |||||||||||||| | || |||||
Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGG 450424
Score = 86.0 bits (94), Expect = 6e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763
||||| || || | || ||| | || || || || ||||| || || ||||| | |
Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047
Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823
||||| | || | || || |||||||||||||| ||||| || || || || ||
Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987
Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883
|| ||| | || ||||| || || ||||| ||||| | | || |||| || |||
Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927
Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930
|| || ||||| || || || ||| | ||| | || | ||||| ||
Sbjct 450926 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTCGCGGTGG 450880
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 449897352556320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |