Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq43 156 4e-33 >seq43 Length=605699 Score = 156 bits (172), Expect = 4e-33 Identities = 960/1522 (63%), Gaps = 74/1522 (5%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || |||||||| | || ||||| |||||||||| | ||| | |||||||| Sbjct 34640 ACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGCTCAAAG 34581 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 |||| ||| ||||||||||| | ||||| ||| || ||||| || ||| || Sbjct 34580 CATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCACACAACAGG 34521 Query 138628 GAATTCCGTAAACCGTGAAGCTTG--ATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 || || || | ||| || ||| || | || ||||||| || ||||||||| | | Sbjct 34520 GAGTTGCGGATACCATG--CTTTGCAATCTGCTCTTTGAGCGTCGCCCAGTCCCAGAGCT 34463 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | | ||| | ||||||| || ||||| || | |||| | || || ||| | Sbjct 34462 TGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCT 34403 Query 138746 CGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCCTCGAGCGCACCAT 138805 |||| | | |||| ||| ||||| |||| ||| || || || ||||| | Sbjct 34402 CGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAGGCTTCAAGAGCACCGT 34343 Query 138806 AGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGCA 138865 ||| || || || || || || ||| |||||||| ||| | |||| Sbjct 34342 GGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAGTCGAATGGCA 34283 Query 138866 TGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGGC 138925 || | ||| || ||||| || |||||||| || | |||| || || || | Sbjct 34282 GCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGGTCGGTGAC 34223 Query 138926 GCAGATTTG-ACGCTTTTGCGGCTTC---GATAGGATAATAGTTTACATCGATGATTTTG 138981 || || | ||||| | ||||| || || || ||||| || |||||||| ||| Sbjct 34222 GCTTGTTGGAACGCT----CAGCTTCAATGACTGGGTAGTAGTTGACGTCGATGATCTTG 34167 Query 138982 TTTAAATTTCGCACGACCACCTTAG-----TCGT----ATGCTTTAA-TCGTTCAAAATC 139031 || || || || | || ||||| | |||| | ||| || |||| | Sbjct 34166 TTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGTAGACGGGT 34107 Query 139032 GTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTAT 139091 || | ||| | | ||||| || | || | ||| | | ||| ||||| | Sbjct 34106 GTTTCTGCGCGC-ATGTCGATGA--AGGTGGGCAA-------GGC---AATGGAGGCGAG 34060 Query 139092 GTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACT 139151 ||||| || ||||| || ||||| | ||| |||||||| |||| |||||| || || Sbjct 34059 ATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCT 34000 Query 139152 ACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAG 139211 |||||||| ||||| | || | || || || ||||| || || || ||||| || Sbjct 33999 GCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAG 33940 Query 139212 CATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGT-CCCTAG 139270 ||| | || |||| || || ||| | ||| | ||| | | || || || Sbjct 33939 CATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAAT-------AGC--GTACCACAG 33889 Query 139271 CTTGTAT---TTGACGCACGTAAAG---TT--CGTCGCGCTCGTACTTTTCGTAGAGTTC 139322 ||| | | |||| | | | | | || || | ||||||||| ||| | | Sbjct 33888 CTTCTGTGCCTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGC 33829 Query 139323 GTCGAATCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGA 139382 || ||| || || || | || | | | |||| | || || ||||||||||| Sbjct 33828 TTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGA 33769 Query 139383 CCATACGCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAG 139442 ||| |||| ||| ||| || ||| ||||||| ||||| || ||||| | ||| | | Sbjct 33768 CCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAA 33709 Query 139443 CAAATCGCGCGCCTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAA 139502 ||| ||||| || |||||| || ||| || || |||||| |||| Sbjct 33708 CAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAA 33649 Query 139503 AACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACC 139559 | ||| ||||||||||| || | || || || | || ||| || |||||||| Sbjct 33648 GATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACC 33589 Query 139560 TTGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGC 139619 ||| ||||| | | ||| || ||||| || |||| ||| || | ||| | | Sbjct 33588 TTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGA 33529 Query 139620 TGTTCCGTTGGTGCTACGG--ATGGGACTGTTGCGAGCTCGGACGTCATGTACATTGATG 139677 ||| || || || | ||| ||| |||| || |||| | || ||||||| Sbjct 33528 TGTACCATTTGTAC--CGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGA 33471 Query 139678 CCGATTCCGCCGCCAAATTTGGATATTAAAACGCAATCGCGT--AATGTCTCGTATATAC 139735 || || || ||| | || || || | ||| || | | ||| ||||| || | Sbjct 33470 CCAATGCCACCGGCTGTCTTAGAGAT--CATGGCACACGTTTTGAGTGTGTCGTAGATGC 33413 Query 139736 CTCTTATGCTGTCGTCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTT--T 139793 | || ||| |||| ||| ||||| || ||||| ||||| ||||| || ||| Sbjct 33412 CATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGG--GTTGGG 33355 Query 139794 CGTGCCGGCTGCAAACAGAGTAGGACTCGCGTGCGTGAACATTTGTTT---CGACATCAA 139850 ||| ||||| || || ||||| ||||| ||||| || || ||||| | Sbjct 33354 CGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAA---GTGCTTGGAAGACATGAG 33298 Query 139851 TTCGTACGTTTCGATGGCGCTCACAATATCCCTTCCGTGGATACCGACAGAGACTCGCAT 139910 | ||| || || ||||| | |||| || || || || || |||| ||| ||||| Sbjct 33297 GTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCAT 33238 Query 139911 CAGCATATGTTGGATCCGTTCGGCCACCGCGCCCTCGAtttttttCAGATAACCGTTCTC 139970 | ||| || || | || || || || || ||||| || |||| ||| Sbjct 33237 GATCATGTGCTGCGGTCTCTCTGCAACAGCACCATCGATACGCAACAAATAAGAACGCTC 33178 Query 139971 TAGGGTCTTGTAGCCAAAGTAC 139992 || |||||| ||||||||||| Sbjct 33177 GAGCGTCTTGAAGCCAAAGTAC 33156 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || || || || ||||| ||||| | | Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| |||||||| ||||| || || || || || Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | |||||||| || || ||||| |||||| | | || | || || ||| Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||||| ||||| || ||| | |||||||||||||| | || ||||| Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGG 450424 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || ||| | || || || || ||||| || || ||||| | | Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||||||||| ||||| || || || || || Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | || ||||| || || ||||| ||||| | | || |||| || ||| Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || ||| | ||| | || | ||||| || Sbjct 450926 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTCGCGGTGG 450880 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897352556320