Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq23 170 3e-36 seq44 149 1e-29 seq43 120 5e-21 seq12 86.0 1e-10 >seq23 Length=690853 Score = 170 bits (188), Expect = 3e-36 Identities = 238/330 (72%), Gaps = 9/330 (3%) Strand=Plus/Minus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| ||||| ||| ||| | || ||||||||| ||| || |||||||| || ||||| Sbjct 88923 ACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACCACGCTT 88864 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||||||||||| ||| ||| ||||||||||| |||||||| || ||||| Sbjct 88863 CTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGCAGCAAA 88804 Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT-TG--ATCCACTTCATCGC 794516 | || || ||| ||||| || || ||| | || || ||||| || || Sbjct 88803 AGCCACAAGACGCAGTGCAAAGGT----AG--ACTCGTCGTCTGCAATCCAGCGCAGTGC 88750 Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576 ||| ||||| |||| | | | | || | || ||||| || |||||||| | | Sbjct 88749 CCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGCTGCCG 88690 Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636 | | | ||||||| ||| || || |||||||| ||||||||||||||||||||||| Sbjct 88689 TTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTT 88630 Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 ||| ||||||||||||||| ||||| Sbjct 88629 TTCCGCCATGATCTGGAAGCCATAGAAGCA 88600 Score = 134 bits (148), Expect = 2e-25 Identities = 177/245 (72%), Gaps = 3/245 (1%) Strand=Plus/Minus Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209 ||||| ||||||||||| || || ||| || || || || ||| || ||||| Sbjct 88595 GCCTCTGGTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCA 88536 Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269 || |||||||| || || ||||||||||| ||| ||| || ||||||||| ||||| Sbjct 88535 TCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGC 88476 Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326 | |||||| | | ||| | |||||| | ||||||||||||||| ||||| Sbjct 88475 TTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGAT 88416 Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386 || || |||||||||||||| | ||| ||| || || ||||||||| || || ||| Sbjct 88415 GCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGACGAAG 88356 Query 796387 CGATT 796391 || || Sbjct 88355 CGTTT 88351 Score = 131 bits (144), Expect = 3e-24 Identities = 322/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Minus Query 2018913 CTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCAC 2018972 || || ||| | || |||||||||||| | ||||| ||||| || ||||| || | Sbjct 331291 CTGCCCTGGGTGGAGAAGTACCGCCCGCATCTTCTCGAAGACATTGTCGGCAATGAAGAG 331232 Query 2018973 GCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCG 2019032 |||||| |||||| | | || ||| |||||| |||| || || | | | Sbjct 331231 ACCGTTGATCGCCTCAAAGTCATTGCACGCGATGGCAACCTGCCACACATCATCATCTCT 331172 Query 2019033 GGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGC----GCGCGTGCTCTT 2019088 || ||| || | || || ||||| |||| || || || |||| ||||| Sbjct 331171 GGTATGCCAGGTATTGGGAAAACCACATCCATCCACTGTCTAGCCAATGCGC-TGCTC-- 331115 Query 2019089 GGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGA 2019148 || | || | | || || || |||||||||||||| ||||||||||||||| | || Sbjct 331114 -GGATCCGCATACAAGGACGCAGTTCTCGAACTCAATGCTTCAGACGAGCGCGGCATCGA 331056 Query 2019149 CGTCGTGCGTAGAATCATC-AAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGC 2019206 ||||| || | |||| |||||| || || |||| | || ||| || || Sbjct 331055 TGTCGTTCGCAACCGCATCAAAGCAT-TTGC-TCAAAAAAAGGTAACGCTGAAACCTGGT 330998 Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266 || |||||| | ||||| |||||||| || || | | ||| | | || |||||||| Sbjct 330997 CGTCACAAGATTATCATTCTCGATGAAGCGGATTCTATGACGACAGGCGCACAGCAGGCT 330938 Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326 || || |||||||||| || | || || ||||| ||||| || || ||||||| | Sbjct 330937 CTGCGCCGTACCATGGAAATTTATGCAAATACAACGCGTTTTGCACTTGCTTGCAACATG 330878 Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386 ||| | | | || || || | || || || ||||| ||||||| | |||| ||| Sbjct 330877 TCGAGCAAGATTATTGAGCCCATTCAATCACGATGTGCCATTTTGCGCTATACGCGACTC 330818 Query 2019387 A 2019387 | Sbjct 330817 A 330817 >seq44 Length=579512 Score = 149 bits (164), Expect = 1e-29 Identities = 179/241 (74%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||||||||| ||||| |||||||||||| |||| || || || | | Sbjct 33677 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCTGGGAG 33736 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| || || || | |||||||||||||| | | ||| || |||||| || | Sbjct 33737 GATGAGACGGACAGATGTCTGGATCTCGCGCGAGGAGATGGTTGACTTCTTGTT-GTAGG 33795 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 | || || | ||||| | | ||| ||| || | |||||||||||||| ||||| | Sbjct 33796 CAGCGAGCTTGGATGCCTCAGAGGCGACGCGCTCAAAGATGTCGTTGACAAATGAGTTGA 33855 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 ||| ||||| | ||| |||||| || ||| ||||| ||||||||||| ||||||| Sbjct 33856 GGATGGACATGGCCTTGCCGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGACCTTGT 33915 Query 1485710 A 1485710 | Sbjct 33916 A 33916 >seq43 Length=605699 Score = 120 bits (132), Expect = 5e-21 Identities = 182/259 (70%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600 ||||||||||| | || |||| ||| ||||| || |||||||| | | ||||||||| Sbjct 33587 TGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGAT 33528 Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660 || || || || || | ||| ||| | || || | ||| | | || Sbjct 33527 GTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCA 33468 Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720 ||||| ||||| | ||| ||||| | || ||| |||| || || ||||||||||| ||| Sbjct 33467 ATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCG 33408 Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780 |||||||| ||||||| | || ||||| |||||| ||| ||| | ||| ||| Sbjct 33407 ATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCG 33348 Query 2073781 GCATTGAAGAGCGTGGGCG 2073799 || |||||||| || |||| Sbjct 33347 GCGTTGAAGAGGGTAGGCG 33329 >seq12 Length=806614 Score = 86.0 bits (94), Expect = 1e-10 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 2411841 ATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAG 2411900 ||||||||||| || |||| || |||||||| | | | ||| || || |||| | Sbjct 691662 ATTGTCGAGGTACGCATGCAGATCTGCAAAGAGCACCTTGACCTTGCACCCAGCCTTCAA 691721 Query 2411901 AAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCGTCGGCGC 2411960 |||||||| | || | || |||||||||||| | ||||||||||||||| || || Sbjct 691722 GAAGTCGGCAATCTTCGTTAGGGCCACAAAGTAGCCGATATGGGGCTTGCCCGTGGGTGC 691781 Query 2411961 GGTGCCCCAATAAATGCAGAGAGGGCGCTC 2411990 || ||||| || ||| |||| ||||| Sbjct 691782 TGTTCCCCAGTACATGACGAGATCTCGCTC 691811 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916241719519316