Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq23 170 3e-36
seq44 149 1e-29
seq43 120 5e-21
seq12 86.0 1e-10
>seq23
Length=690853
Score = 170 bits (188), Expect = 3e-36
Identities = 238/330 (72%), Gaps = 9/330 (3%)
Strand=Plus/Minus
Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399
||| ||||| ||| ||| | || ||||||||| ||| || |||||||| || |||||
Sbjct 88923 ACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGACCACGCTT 88864
Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459
||||||||||||||||| ||| ||| ||||||||||| |||||||| || |||||
Sbjct 88863 CTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACAGCAGCAAA 88804
Query 794460 GCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTTGT-TG--ATCCACTTCATCGC 794516
| || || ||| ||||| || || ||| | || || ||||| || ||
Sbjct 88803 AGCCACAAGACGCAGTGCAAAGGT----AG--ACTCGTCGTCTGCAATCCAGCGCAGTGC 88750
Query 794517 CCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGCGCGAAAGAGGTGGTCCTT 794576
||| ||||| |||| | | | | || | || ||||| || |||||||| | |
Sbjct 88749 CCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGCTGCCG 88690
Query 794577 CTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGAGTAGGTCTCTGAGTGGATGTT 794636
| | | ||||||| ||| || || |||||||| |||||||||||||||||||||||
Sbjct 88689 TTGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGTAGGTCTCTGAGTGGATGTT 88630
Query 794637 TTCGATGGCGATCTGGAAGCCATAAAAGCA 794666
||| ||||||||||||||| |||||
Sbjct 88629 TTCCGCCATGATCTGGAAGCCATAGAAGCA 88600
Score = 134 bits (148), Expect = 2e-25
Identities = 177/245 (72%), Gaps = 3/245 (1%)
Strand=Plus/Minus
Query 796150 GCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCCG 796209
||||| ||||||||||| || || ||| || || || || ||| || |||||
Sbjct 88595 GCCTCTGGTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCA 88536
Query 796210 TCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAGC 796269
|| |||||||| || || ||||||||||| ||| ||| || ||||||||| |||||
Sbjct 88535 TCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGC 88476
Query 796270 GAGA---CCCAGTGGACCGTGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAG 796326
| |||||| | | ||| | |||||| | ||||||||||||||| |||||
Sbjct 88475 TTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGAT 88416
Query 796327 GCCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACAGAACAAAG 796386
|| || |||||||||||||| | ||| ||| || || ||||||||| || || |||
Sbjct 88415 GCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGACGAAG 88356
Query 796387 CGATT 796391
|| ||
Sbjct 88355 CGTTT 88351
Score = 131 bits (144), Expect = 3e-24
Identities = 322/481 (67%), Gaps = 12/481 (2%)
Strand=Plus/Minus
Query 2018913 CTCCCGTGGATCGAAAAGTACCGCCCGACAGTGCTCGACGACATCGTGGGCAACGAGCAC 2018972
|| || ||| | || |||||||||||| | ||||| ||||| || ||||| || |
Sbjct 331291 CTGCCCTGGGTGGAGAAGTACCGCCCGCATCTTCTCGAAGACATTGTCGGCAATGAAGAG 331232
Query 2018973 GCCGTTGCCTACCTCAAGGCGCTGGCCGCCGACGGCAACATGCCCAACCTCTTGCTGGCG 2019032
|||||| |||||| | | || ||| |||||| |||| || || | | |
Sbjct 331231 ACCGTTGATCGCCTCAAAGTCATTGCACGCGATGGCAACCTGCCACACATCATCATCTCT 331172
Query 2019033 GGCCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGCCTGGC----GCGCGTGCTCTT 2019088
|| ||| || | || || ||||| |||| || || || |||| |||||
Sbjct 331171 GGTATGCCAGGTATTGGGAAAACCACATCCATCCACTGTCTAGCCAATGCGC-TGCTC-- 331115
Query 2019089 GGGCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGA 2019148
|| | || | | || || || |||||||||||||| ||||||||||||||| | ||
Sbjct 331114 -GGATCCGCATACAAGGACGCAGTTCTCGAACTCAATGCTTCAGACGAGCGCGGCATCGA 331056
Query 2019149 CGTCGTGCGTAGAATCATC-AAGCATCACGCTTCGAAAAGAATCGAC-CTGCCGCCCGGC 2019206
||||| || | |||| |||||| || || |||| | || ||| || ||
Sbjct 331055 TGTCGTTCGCAACCGCATCAAAGCAT-TTGC-TCAAAAAAAGGTAACGCTGAAACCTGGT 330998
Query 2019207 CGCCACAAGGTGATCATCCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCC 2019266
|| |||||| | ||||| |||||||| || || | | ||| | | || ||||||||
Sbjct 330997 CGTCACAAGATTATCATTCTCGATGAAGCGGATTCTATGACGACAGGCGCACAGCAGGCT 330938
Query 2019267 CTCCGATCGACCATGGAAAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACG 2019326
|| || |||||||||| || | || || ||||| ||||| || || ||||||| |
Sbjct 330937 CTGCGCCGTACCATGGAAATTTATGCAAATACAACGCGTTTTGCACTTGCTTGCAACATG 330878
Query 2019327 TCGTCGATGGTCATCGAAGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTC 2019386
||| | | | || || || | || || || ||||| ||||||| | |||| |||
Sbjct 330877 TCGAGCAAGATTATTGAGCCCATTCAATCACGATGTGCCATTTTGCGCTATACGCGACTC 330818
Query 2019387 A 2019387
|
Sbjct 330817 A 330817
>seq44
Length=579512
Score = 149 bits (164), Expect = 1e-29
Identities = 179/241 (74%), Gaps = 2/241 (1%)
Strand=Plus/Plus
Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530
||||||||||||||||||||| ||||| |||||||||||| |||| || || || | |
Sbjct 33677 GTACTTGGTGACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCTCCTGGGAG 33736
Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590
||| || || || | |||||||||||||| | | ||| || |||||| || |
Sbjct 33737 GATGAGACGGACAGATGTCTGGATCTCGCGCGAGGAGATGGTTGACTTCTTGTT-GTAGG 33795
Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
| || || | ||||| | | ||| ||| || | |||||||||||||| ||||| |
Sbjct 33796 CAGCGAGCTTGGATGCCTCAGAGGCGACGCGCTCAAAGATGTCGTTGACAAATGAGTTGA 33855
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
||| ||||| | ||| |||||| || ||| ||||| ||||||||||| |||||||
Sbjct 33856 GGATGGACATGGCCTTGCCGGAGATACCAGTGTCTGGGTGGACCTGCTTGAGGACCTTGT 33915
Query 1485710 A 1485710
|
Sbjct 33916 A 33916
>seq43
Length=605699
Score = 120 bits (132), Expect = 5e-21
Identities = 182/259 (70%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 2073541 TGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTTGGAC 2073600
||||||||||| | || |||| ||| ||||| || |||||||| | | |||||||||
Sbjct 33587 TGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGAT 33528
Query 2073601 TCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAAGCCG 2073660
|| || || || || | ||| ||| | || || | ||| | | ||
Sbjct 33527 GTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCA 33468
Query 2073661 ATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCCCTCG 2073720
||||| ||||| | ||| ||||| | || ||| |||| || || ||||||||||| |||
Sbjct 33467 ATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCG 33408
Query 2073721 ATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGTGCCG 2073780
|||||||| ||||||| | || ||||| |||||| ||| ||| | ||| |||
Sbjct 33407 ATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCG 33348
Query 2073781 GCATTGAAGAGCGTGGGCG 2073799
|| |||||||| || ||||
Sbjct 33347 GCGTTGAAGAGGGTAGGCG 33329
>seq12
Length=806614
Score = 86.0 bits (94), Expect = 1e-10
Identities = 109/150 (73%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 2411841 ATTGTCGAGGTGGGCGTGCACGTCGGCAAAGAGGATCCTCACCCGACATCCGGCCTGGAG 2411900
||||||||||| || |||| || |||||||| | | | ||| || || |||| |
Sbjct 691662 ATTGTCGAGGTACGCATGCAGATCTGCAAAGAGCACCTTGACCTTGCACCCAGCCTTCAA 691721
Query 2411901 AAAGTCGGCCAGTTTAAAGATGGGCACAAAGTAGCCCAGATGGGGCTTGCCCGTCGGCGC 2411960
|||||||| | || | || |||||||||||| | ||||||||||||||| || ||
Sbjct 691722 GAAGTCGGCAATCTTCGTTAGGGCCACAAAGTAGCCGATATGGGGCTTGCCCGTGGGTGC 691781
Query 2411961 GGTGCCCCAATAAATGCAGAGAGGGCGCTC 2411990
|| ||||| || ||| |||| |||||
Sbjct 691782 TGTTCCCCAGTACATGACGAGATCTCGCTC 691811
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7916241719519316
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |