Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_022646.1
Length=101818
Score E
Sequences producing significant alignments: (Bits) Value
seq40 113 3e-20
seq43 89.7 3e-13
>seq40
Length=667070
Score = 113 bits (124), Expect = 3e-20
Identities = 156/216 (72%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | || ||||||||| ||||| ||||| | || |||| | ||
Sbjct 1489 AGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCC 1430
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || ||||| || || |||||||| |||| | || ||||||||
Sbjct 1429 TCGAGCTGCTTGCCAGCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCC 1370
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATT----GGCCTCGACATCAACGGTTAT 34941
| ||||| ||||| || | |||||| | || |||||| || | ||| ||
Sbjct 1369 TGGATTTTCGACTTGAC--AT--TGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGAT 1314
Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
|||||| |||||||||||||| || ||||| |||||
Sbjct 1313 GGTCTTGCCCGTGAGGGTCTTGACGAAGATTTGCAT 1278
>seq43
Length=605699
Score = 89.7 bits (98), Expect = 3e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825
||||| ||||| | ||| |||||||||||| || ||||| | | |||| ||||
Sbjct 451123 AGGACAAGGTGGAGGGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCATCC 451182
Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885
|| || ||||| || || || || || || ||||| || | || | |||||||||||
Sbjct 451183 TCAAGCTGCTTGCCAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCC 451242
Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945
| || || ||||| | || | || | ||| || || | || ||||||
Sbjct 451243 TGAATCTTGCTCTTGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTC 451302
Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||||| || || ||||| ||||||||||||||
Sbjct 451303 TTTCCAGTAAGAGTCTTGACAAAGATCTGCAT 451334
Score = 87.8 bits (96), Expect = 1e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 34769 ACCAGGTG-AATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTC 34827
|||| ||| |||| || ||||||||||||||| ||||| | | |||| |||| ||
Sbjct 450442 ACCAAGTGCAATGTTGA-CTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCATCCTC 450500
Query 34828 CAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTT 34887
|| |||||||| || ||||| || || |||||||| | || | || |||||||| |
Sbjct 450501 AAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTG 450560
Query 34888 TATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTT 34947
|| || |||||| | || | || | ||| || || | || ||||||||
Sbjct 450561 AATCTTGCTCTTGACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTCTT 450620
Query 34948 TCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977
||| || || ||||| || || || |||||
Sbjct 450621 TCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 325692625347236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |