Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq24 196 4e-44 seq3 109 4e-18 >seq24 Length=98465 Score = 196 bits (216), Expect = 4e-44 Identities = 712/1104 (64%), Gaps = 8/1104 (1%) Strand=Plus/Plus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 || ||||| ||| || |||| ||| ||| || |||| ||||| | || || Sbjct 56298 TTGGTAATGACAATGTTGTTGGTCTTGCCCGTTCCCTTTTCAGTGGCAGAAATGTTGAGG 56357 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || |||||||||| ||||||||| || ||||| || || || || | |||||||| Sbjct 56358 ATCGAGTTGGCATCCACATCAAATGTCACCTCAATCTGTGGAACACCACGAGGAGCAGGT 56417 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || || ||| | ||| | || || || || || || | || ||| Sbjct 56418 GGAATACCAGTCAAGTCAAACTTGCCGAGCAAGTTGCAGTCCTTGGTACGTGCACGCTCA 56477 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || || || | || || || ||| || || || || || | ||| ||| Sbjct 56478 CCTTCAAACACCTGAATCAACACACCAGGCTGGTTGTCGCTGTAGGTAGAAAAGG-TCTC 56536 Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679 || || || |||||| || ||||| | ||| | ||||| | |||||| || Sbjct 56537 CGACTTCTTTGTAGGAATCGTCGTGTTGCGTGTAATGAGGGGTGTCATCACACCACCGGC 56596 Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739 || || | ||| | ||| || || | ||||| | | || | | || ||||| Sbjct 56597 AGTCTCAATACCCATAGAGAGTGGTGCAACATCGAGCAAGAGCAAGTCCTGGGTCTTTTC 56656 Query 281740 ATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798 ||| | ||| |||| |||||| ||||| | |||||||| ||||||||||| |||| Sbjct 56657 TGAAGTGTCGCCAGACAA-AATAGCAGCTTGGACGGCAGCACCGTATGCAACAGCCTCAT 56715 Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT- 281857 |||| || | || | || || | || || ||||| || | || | ||| | ||| Sbjct 56716 CAGGGTTGATGGTCTTGTTGAGCTCCTTGCCGTTGAAGAAGTCAGAGACAAGCT-TCTGG 56774 Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917 || || ||||| | ||||| ||||| | ||||| |||| ||| || || ||| Sbjct 56775 ACACGTGGGATACGGGTCGATCCACCAACAAGCACAATCTCATCCACACTCGACTTGTCC 56834 Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977 | || | ||| || || || ||||| || || | | | | |||||||||| | Sbjct 56835 ATCTTGGCATCACGCAACACCTTCTCAACAGGCTCCATGGTACCGCGGAACAAGTCTGCA 56894 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 282037 ||||| || ||||| | || | |||| || | | | || |||| || || | Sbjct 56895 CAAAGCTCCTCGAACCTGGCACGCGTAATGCTGGTGTAAAAGTCGGTTCCCTCAAAGAGC 56954 Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097 || |||| ||||||| || || | ||| || || |||| ||| || ||||| || || Sbjct 56955 GAGTCAATCTCAATCGATGTCTGTGCCGATGAGGAAAGTGTACGCTTGGCACGCTCGCAA 57014 Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTC 282157 || || | | | || | || || | | ||||||| | || | || | | Sbjct 57015 GCAGTACGCAAACGACGCAGAGCACGAGCATTTGTAGTCAAATCCTTCTTGAACTTGCGC 57074 Query 282158 TTGAAATCT-TCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 282216 ||||| || | | | | ||| || ||||| || ||||| |||||||| || | | Sbjct 57075 TTGAACTCAGTGCAGA-AGTGTGTAACGAGACGGTTGTCAAAGTCTTCACCACCGAGATG 57133 Query 282217 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAAC 282276 || | || | |||| | || | || | |||||||||| | | || | || Sbjct 57134 TGTGTCACCGGCAGTAGACTTGACCTCAAAGATGCCATCTTCAATGGTGAGGAGCGATAC 57193 Query 282277 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTT 282336 |||| ||| |||||||||| ||| || || || || || || || | | || | Sbjct 57194 ATCAAAGGTACCACCACCCAAATCGAAGATGAGCACGTTTTGCTCCTTCTGTCCCTTCCT 57253 Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396 || ||||| || |||| |||||||||||| || || || || |||| ||||||||| | Sbjct 57254 GTCGAGACCGTATGCAATAGCAGCAGCAGTAGGCTCGTTGATGATTCGCAAAACATTCAT 57313 Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456 ||| ||||| || ||||| || || ||||| | || || ||||| || || ||||| Sbjct 57314 ACCGGCAATGAGACCGGCATCCTTGGTTGCTTGACGCTGGGAGTCGTTGAAGTAGGCAGG 57373 Query 282457 AACAGTAATAACGGCATCTGTTAC 282480 |||||| | ||| || | ||||| Sbjct 57374 AACAGTGACAACAGCGTTCGTTAC 57397 >seq3 Length=560494 Score = 109 bits (120), Expect = 4e-18 Identities = 253/380 (67%), Gaps = 6/380 (2%) Strand=Plus/Plus Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485 |||||||| || || | |||||| |||| | ||||| || || ||||| ||||| || Sbjct 199050 GCAGTCACCTTGAGGACACCATTCTCATCAATCTCAAAGGTCACCTCAATCTGAGGCACA 199109 Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545 || | ||||||||||||| || ||| | || | || || || || | || Sbjct 199110 CCACGAGGAGCAGGTGGGATACCAGTCAAGTCGAACTTACCAAGCAAGTTGTTGGCCTTG 199169 Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605 || || ||| ||||| || || | ||| || | ||| | || ||| || || || Sbjct 199170 GTCAAGGATCGCTCACCTTCAAACACTTGAATGGAAACAATAGCTTGGTTGTCGGACGCC 199229 Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665 |||| || | | || || || || || ||||| | | |||| | |||||| Sbjct 199230 GTTGAGAAGATTTGAGACTTCTTTGTTGGGATGACGGTGTTGCGACCAATCAACTTGGTC 199289 Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725 || | |||||| | ||| || | |||||||| || || |||||||||| || | | | Sbjct 199290 ATGACACCACCTGTTGTCTCAATACCAAGAGTGAGTGGGTTGACATCAACGAGCAAGACA 199349 Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785 | |||| ||| ||| | ||||| | || | || | |||||||||||| Sbjct 199350 TCCTGAACACCTTCCTCA-----CGCGACAAG-ACGGCACCCTGCACAGCAGCACCATAG 199403 Query 281786 GCAACAGCTTCATCAGGATT 281805 ||||||||||||||||| || Sbjct 199404 GCAACAGCTTCATCAGGGTT 199423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740628239785944