Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_023639.1
Length=1168989
Score E
Sequences producing significant alignments: (Bits) Value
seq24 196 4e-44
seq3 109 4e-18
>seq24
Length=98465
Score = 196 bits (216), Expect = 4e-44
Identities = 712/1104 (64%), Gaps = 8/1104 (1%)
Strand=Plus/Plus
Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440
|| ||||| ||| || |||| ||| ||| || |||| ||||| | || ||
Sbjct 56298 TTGGTAATGACAATGTTGTTGGTCTTGCCCGTTCCCTTTTCAGTGGCAGAAATGTTGAGG 56357
Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500
|| |||||||||| ||||||||| || ||||| || || || || | ||||||||
Sbjct 56358 ATCGAGTTGGCATCCACATCAAATGTCACCTCAATCTGTGGAACACCACGAGGAGCAGGT 56417
Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560
|| || || ||| | ||| | || || || || || || | || |||
Sbjct 56418 GGAATACCAGTCAAGTCAAACTTGCCGAGCAAGTTGCAGTCCTTGGTACGTGCACGCTCA 56477
Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620
|| || || | || || || ||| || || || || || | ||| |||
Sbjct 56478 CCTTCAAACACCTGAATCAACACACCAGGCTGGTTGTCGCTGTAGGTAGAAAAGG-TCTC 56536
Query 281621 -GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGC 281679
|| || || |||||| || ||||| | ||| | ||||| | |||||| ||
Sbjct 56537 CGACTTCTTTGTAGGAATCGTCGTGTTGCGTGTAATGAGGGGTGTCATCACACCACCGGC 56596
Query 281680 TGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTC 281739
|| || | ||| | ||| || || | ||||| | | || | | || |||||
Sbjct 56597 AGTCTCAATACCCATAGAGAGTGGTGCAACATCGAGCAAGAGCAAGTCCTGGGTCTTTTC 56656
Query 281740 ATCAGTTTGACCA-ACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCAT 281798
||| | ||| |||| |||||| ||||| | |||||||| ||||||||||| ||||
Sbjct 56657 TGAAGTGTCGCCAGACAA-AATAGCAGCTTGGACGGCAGCACCGTATGCAACAGCCTCAT 56715
Query 281799 CAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT- 281857
|||| || | || | || || | || || ||||| || | || | ||| | |||
Sbjct 56716 CAGGGTTGATGGTCTTGTTGAGCTCCTTGCCGTTGAAGAAGTCAGAGACAAGCT-TCTGG 56774
Query 281858 ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCC 281917
|| || ||||| | ||||| ||||| | ||||| |||| ||| || || |||
Sbjct 56775 ACACGTGGGATACGGGTCGATCCACCAACAAGCACAATCTCATCCACACTCGACTTGTCC 56834
Query 281918 AGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAA 281977
| || | ||| || || || ||||| || || | | | | |||||||||| |
Sbjct 56835 ATCTTGGCATCACGCAACACCTTCTCAACAGGCTCCATGGTACCGCGGAACAAGTCTGCA 56894
Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAA 282037
||||| || ||||| | || | |||| || | | | || |||| || || |
Sbjct 56895 CAAAGCTCCTCGAACCTGGCACGCGTAATGCTGGTGTAAAAGTCGGTTCCCTCAAAGAGC 56954
Query 282038 GAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCACGTTCACAT 282097
|| |||| ||||||| || || | ||| || || |||| ||| || ||||| || ||
Sbjct 56955 GAGTCAATCTCAATCGATGTCTGTGCCGATGAGGAAAGTGTACGCTTGGCACGCTCGCAA 57014
Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTC 282157
|| || | | | || | || || | | ||||||| | || | || | |
Sbjct 57015 GCAGTACGCAAACGACGCAGAGCACGAGCATTTGTAGTCAAATCCTTCTTGAACTTGCGC 57074
Query 282158 TTGAAATCT-TCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCAATTT 282216
||||| || | | | | ||| || ||||| || ||||| |||||||| || | |
Sbjct 57075 TTGAACTCAGTGCAGA-AGTGTGTAACGAGACGGTTGTCAAAGTCTTCACCACCGAGATG 57133
Query 282217 AGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAAC 282276
|| | || | |||| | || | || | |||||||||| | | || | ||
Sbjct 57134 TGTGTCACCGGCAGTAGACTTGACCTCAAAGATGCCATCTTCAATGGTGAGGAGCGATAC 57193
Query 282277 ATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTT 282336
|||| ||| |||||||||| ||| || || || || || || || | | || |
Sbjct 57194 ATCAAAGGTACCACCACCCAAATCGAAGATGAGCACGTTTTGCTCCTTCTGTCCCTTCCT 57253
Query 282337 ATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAG 282396
|| ||||| || |||| |||||||||||| || || || || |||| ||||||||| |
Sbjct 57254 GTCGAGACCGTATGCAATAGCAGCAGCAGTAGGCTCGTTGATGATTCGCAAAACATTCAT 57313
Query 282397 ACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGG 282456
||| ||||| || ||||| || || ||||| | || || ||||| || || |||||
Sbjct 57314 ACCGGCAATGAGACCGGCATCCTTGGTTGCTTGACGCTGGGAGTCGTTGAAGTAGGCAGG 57373
Query 282457 AACAGTAATAACGGCATCTGTTAC 282480
|||||| | ||| || | |||||
Sbjct 57374 AACAGTGACAACAGCGTTCGTTAC 57397
>seq3
Length=560494
Score = 109 bits (120), Expect = 4e-18
Identities = 253/380 (67%), Gaps = 6/380 (2%)
Strand=Plus/Plus
Query 281426 GCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACC 281485
|||||||| || || | |||||| |||| | ||||| || || ||||| ||||| ||
Sbjct 199050 GCAGTCACCTTGAGGACACCATTCTCATCAATCTCAAAGGTCACCTCAATCTGAGGCACA 199109
Query 281486 CCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTA 281545
|| | ||||||||||||| || ||| | || | || || || || | ||
Sbjct 199110 CCACGAGGAGCAGGTGGGATACCAGTCAAGTCGAACTTACCAAGCAAGTTGTTGGCCTTG 199169
Query 281546 GTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAA 281605
|| || ||| ||||| || || | ||| || | ||| | || ||| || || ||
Sbjct 199170 GTCAAGGATCGCTCACCTTCAAACACTTGAATGGAAACAATAGCTTGGTTGTCGGACGCC 199229
Query 281606 GTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTC 281665
|||| || | | || || || || || ||||| | | |||| | ||||||
Sbjct 199230 GTTGAGAAGATTTGAGACTTCTTTGTTGGGATGACGGTGTTGCGACCAATCAACTTGGTC 199289
Query 281666 ATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATA 281725
|| | |||||| | ||| || | |||||||| || || |||||||||| || | | |
Sbjct 199290 ATGACACCACCTGTTGTCTCAATACCAAGAGTGAGTGGGTTGACATCAACGAGCAAGACA 199349
Query 281726 TTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATAT 281785
| |||| ||| ||| | ||||| | || | || | ||||||||||||
Sbjct 199350 TCCTGAACACCTTCCTCA-----CGCGACAAG-ACGGCACCCTGCACAGCAGCACCATAG 199403
Query 281786 GCAACAGCTTCATCAGGATT 281805
||||||||||||||||| ||
Sbjct 199404 GCAACAGCTTCATCAGGGTT 199423
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3740628239785944
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |