Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq43 257 2e-63 seq40 131 2e-25 seq23 93.3 4e-14 >seq43 Length=605699 Score = 257 bits (284), Expect = 2e-63 Identities = 937/1453 (64%), Gaps = 49/1453 (3%) Strand=Plus/Minus Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319 ||||||||||| ||||| ||||| || || || ||| || | ||||||||| | || Sbjct 34646 TTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGC 34587 Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379 ||||| | || ||| |||| |||||| | || | || |||||||| || | Sbjct 34586 TCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCACAC 34527 Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTC-AGAGCCGCCCAGTCCCA 148438 | ||| |||||||| | ||| | ||| || | || ||| || | |||||||||||| Sbjct 34526 AACAGGGAGTTGCGGATACCATGCTTTGCAATCT-GCTCTTTGAGCGTCGCCCAGTCCCA 34468 Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCT 148498 |||| | ||||| || ||||||| ||| ||||||| || || | || || Sbjct 34467 GAGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGA 34408 Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558 ||||||||| | ||| || || | | ||||| || || || || || || Sbjct 34407 GCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAGGCTTCAAGAGC 34348 Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC---GCCGCCGACTCGCTTTC 148615 |||| ||| || ||||| ||||| |||| ||| | ||| | | | | || Sbjct 34347 ACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAG---TC 34291 Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675 | | |||| || || || || ||||| || || || || || | || ||||| Sbjct 34290 GAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGG 34231 Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC---GAGCGGATAGTGGTTGCGGTCGAT 148732 ||||| ||||||| | || | ||| || || || |||| |||| |||||| Sbjct 34230 TCGGTGACGCTTGTTGGA-ACGCTCA-GCT-TCAATGACTGGGTAGTAGTTGACGTCGAT 34174 Query 148733 GATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGT 148791 |||||||| |||| ||||| | || ||||| | | | | ||| | || |||| Sbjct 34173 GATCTTGTTCAAG-TTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGT 34115 Query 148792 ACT----TGT---------CATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTG 148838 | ||| ||| | ||||| | | || ||| || ||||| |||||| Sbjct 34114 AGACGGGTGTTTCTGCGCGCATGT-CGATGAAGGTGGGCAAGGCAATGGAGGCGAGATTG 34056 Query 148839 CACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898 || || ||| |||||| || || |||||| || ||||||| |||| |||||||| Sbjct 34055 CAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCTGCAC 33996 Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958 ||||| || | |||||| || || ||||| |||||| |||||||||||||||||| Sbjct 33995 TTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAGCATG 33936 Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCG 149015 | || ||| || || |||| || | || | ||| ||| | ||| || Sbjct 33935 AAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCA---CAGCTTCTGTGC- 33880 Query 149016 CGCACTTGCTGCTCGTAGCGACCCT-----CCTGCTCGTATAAAGTATACAGCCGCTCGA 149070 |||| || || | |||| | ||| |||||| || |||| || | Sbjct 33879 ----CTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTCAA 33824 Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130 | | ||||| || |||| | ||| || || | || |||||||||||||||||| Sbjct 33823 ATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCACT 33764 Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190 |||| | | | | ||| |||||||| || ||||| || | |||||| || || | | || Sbjct 33763 CGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAAGT 33704 Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250 |||| || | ||||| ||| ||| ||||| || || | || || |||| Sbjct 33703 CGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGATGT 33644 Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGT 149307 | |||||||| ||||||||||| | || | || || ||| ||||| || |||| Sbjct 33643 CTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACCTTGGT 33584 Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367 |||| | | | ||||||| || || || | ||| || ||||| ||| || | Sbjct 33583 CGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGATGTAC 33524 Query 149368 CGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427 | || ||| | |||| |||||| || || | ||| || |||| || |||| Sbjct 33523 CATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCAATGC 33464 Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487 | ||| | ||| ||||| || || ||| || ||||||||| ||||| Sbjct 33463 CACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCGATCG 33404 Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547 ||| |||||| || | || ||||| || | | ||| || |||| ||||| Sbjct 33403 AGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCGGCGT 33344 Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607 ||| | ||| || |||||||| || | || ||| | | ||| | ||| | Sbjct 33343 TGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTGTATGTCTCAA 33284 Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667 | || |||||||| ||||| ||||| | ||||| ||||| | ||| ||||||| Sbjct 33283 TGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATCATGTGCTGCG 33224 Query 149668 GTCGCTCCGCCAC 149680 ||| ||| || || Sbjct 33223 GTCTCTCTGCAAC 33211 Score = 127 bits (140), Expect = 2e-24 Identities = 149/199 (75%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||| ||||| ||||| |||||||| ||| ||| ||| ||| | ||||| |||||||||| Sbjct 451137 GGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCA-TCCTCAAGCTGCTTGC 451195 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | || ||||||| |||||||| || || || ||||| |||||||| ||||| || Sbjct 451196 CAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCT 451255 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | | ||| || |||| |||| ||| || || || |||| Sbjct 451256 TGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAG 451315 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || || || |||||||| Sbjct 451316 TCTTGACAAAGATCTGCAT 451334 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| ||| ||| ||| ||| | ||||| |||||||| || Sbjct 450454 GTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCA-TCCTCAAGCTGCTTTCC 450512 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || | ||||| ||||||||||| || || || ||||||||||| ||||| ||| Sbjct 450513 AGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTT 450572 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || |||| |||| ||| || || |||||||| Sbjct 450573 GACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGT 450632 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 450633 CTTGACGAAAATTTGCAT 450650 Score = 122 bits (134), Expect = 8e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| |||||||| || | | |||| |||||| ||||||||||| Sbjct 450682 GTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 450741 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || ||||||| ||||||||||| || || ||||| |||||||| ||||| |||| Sbjct 450742 GCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGCTCTTG 450801 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | |||| ||||| | | || || |||| || | ||| || || |||| ||| Sbjct 450802 ACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTC 450861 Query 133644 TTTACGAAAATCTGCAT 133660 || |||||||||||||| Sbjct 450862 TTAACGAAAATCTGCAT 450878 Score = 120 bits (132), Expect = 3e-22 Identities = 147/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || ||| ||| ||| |||||| ||||||||||| Sbjct 450910 GTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACC-GTCCTCAAGCTGCTTGCC 450968 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 || ||||||| ||||||||||| || ||||| ||||||||||| |||||| ||| Sbjct 450969 AGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTT 451028 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | |||| ||||| | | ||| || || | || | ||| || || |||| || Sbjct 451029 GACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGT 451088 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 451089 CTTGACGAAAATTTGCAT 451106 Score = 89.7 bits (98), Expect = 5e-13 Identities = 140/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| ||||| || ||||| || | | ||| ||| | || || |||||||| || Sbjct 451366 GTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCA-TCTTCAAGCTGCTTACC 451424 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| |||| | ||||||||||| || || || ||||||||||| ||| ||| | || Sbjct 451425 AGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTC-CTGAATTTTCGACT 451483 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 ||| | |||| ||||| | || || || || | ||| | ||| ||||| || || | Sbjct 451484 TGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTG 451543 Query 133642 TTTTTACGAAAATCT 133656 | || || || |||| Sbjct 451544 TCTTGACAAAGATCT 451558 >seq40 Length=667070 Score = 131 bits (144), Expect = 2e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523 || ||||| ||||| || ||||| || | | |||| |||||||||||||||||| Sbjct 1474 GTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 1415 Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583 || | ||||| ||||||||||| || ||||||||||||||||| ||| || |||| Sbjct 1414 GCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTG 1355 Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643 | | || | ||||| | || ||| || |||| ||||| ||| ||||| || || || Sbjct 1354 ACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 1295 Query 133644 TTTACGAAAATCTGCAT 133660 || ||||| || ||||| Sbjct 1294 TTGACGAAGATTTGCAT 1278 >seq23 Length=690853 Score = 93.3 bits (102), Expect = 4e-14 Identities = 126/172 (73%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413 ||| || ||||| || |||||||| ||||| || ||||| | | |||||||| | ||| Sbjct 89229 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCAT 89170 Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTA-TTTCGGCTGGCCCAACTGT-ACGAGCAGT 120471 ||| || || || ||||| | || | || | ||| | || |||| | ||||| ||| Sbjct 89169 AAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTG--CCAAGAGAGACGAGGAGT 89112 Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCA 120523 || || || ||||| ||||||||||||| |||| || || || || |||| Sbjct 89111 CGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCA 89060 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483420534118560