Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq43 257 2e-63
seq40 131 2e-25
seq23 93.3 4e-14
>seq43
Length=605699
Score = 257 bits (284), Expect = 2e-63
Identities = 937/1453 (64%), Gaps = 49/1453 (3%)
Strand=Plus/Minus
Query 148260 TTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACGGT 148319
||||||||||| ||||| ||||| || || || ||| || | ||||||||| | ||
Sbjct 34646 TTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAGGGC 34587
Query 148320 TCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTACC 148379
||||| | || ||| |||| |||||| | || | || |||||||| || |
Sbjct 34586 TCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCACAC 34527
Query 148380 AGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTC-AGAGCCGCCCAGTCCCA 148438
| ||| |||||||| | ||| | ||| || | || ||| || | ||||||||||||
Sbjct 34526 AACAGGGAGTTGCGGATACCATGCTTTGCAATCT-GCTCTTTGAGCGTCGCCCAGTCCCA 34468
Query 148439 GAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTAGCGGGGCT 148498
|||| | ||||| || ||||||| ||| ||||||| || || | || ||
Sbjct 34467 GAGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCCCTGAGAGGCAGGTGA 34408
Query 148499 GCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCCTCGAGCGC 148558
||||||||| | ||| || || | | ||||| || || || || || ||
Sbjct 34407 GCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAGGCTTCAAGAGC 34348
Query 148559 GCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGC---GCCGCCGACTCGCTTTC 148615
|||| ||| || ||||| ||||| |||| ||| | ||| | | | | ||
Sbjct 34347 ACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGCGAG---TC 34291
Query 148616 GTACGGCATACGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCCAATGGG 148675
| | |||| || || || || ||||| || || || || || | || |||||
Sbjct 34290 GAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCGAGACCTTGCACACCAAGACCGATGGG 34231
Query 148676 CCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTC---GAGCGGATAGTGGTTGCGGTCGAT 148732
||||| ||||||| | || | ||| || || || |||| |||| ||||||
Sbjct 34230 TCGGTGACGCTTGTTGGA-ACGCTCA-GCT-TCAATGACTGGGTAGTAGTTGACGTCGAT 34174
Query 148733 GATCTTGT-CAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAATCGT 148791
|||||||| |||| ||||| | || ||||| | | | | ||| | || ||||
Sbjct 34173 GATCTTGTTCAAG-TTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTGAAGTCGT 34115
Query 148792 ACT----TGT---------CATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTG 148838
| ||| ||| | ||||| | | || ||| || ||||| ||||||
Sbjct 34114 AGACGGGTGTTTCTGCGCGCATGT-CGATGAAGGTGGGCAAGGCAATGGAGGCGAGATTG 34056
Query 148839 CACACGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCAT 148898
|| || ||| |||||| || || |||||| || ||||||| |||| ||||||||
Sbjct 34055 CAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTGCTGCAC 33996
Query 148899 TTGATCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATG 148958
||||| || | |||||| || || ||||| |||||| ||||||||||||||||||
Sbjct 33995 TTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTACAGCATG 33936
Query 148959 TACGGTCCGCCAGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCG 149015
| || ||| || || |||| || | || | ||| ||| | ||| ||
Sbjct 33935 AAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCA---CAGCTTCTGTGC- 33880
Query 149016 CGCACTTGCTGCTCGTAGCGACCCT-----CCTGCTCGTATAAAGTATACAGCCGCTCGA 149070
|||| || || | |||| | ||| |||||| || |||| || |
Sbjct 33879 ----CTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTCAA 33824
Query 149071 ACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACA 149130
| | ||||| || |||| | ||| || || | || ||||||||||||||||||
Sbjct 33823 ATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCACT 33764
Query 149131 CGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGT 149190
|||| | | | | ||| |||||||| || ||||| || | |||||| || || | | ||
Sbjct 33763 CGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAAGT 33704
Query 149191 CGCGCGCCTTGCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGT 149250
|||| || | ||||| ||| ||| ||||| || || | || || ||||
Sbjct 33703 CGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGATGT 33644
Query 149251 CCGCGTGCCACGGCTCAATGTACACCGCGAGCGCGCCCTTGCGC---TTGCCGCCCTGGT 149307
| |||||||| ||||||||||| | || | || || ||| ||||| || ||||
Sbjct 33643 CTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACCTGGACGCTTGTTGCCACCTTGGT 33584
Query 149308 CGACGTGGCGCACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGC 149367
|||| | | | ||||||| || || || | ||| || ||||| ||| || |
Sbjct 33583 CGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGGATGTAC 33524
Query 149368 CGTTAGTAGAGCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGC 149427
| || ||| | |||| |||||| || || | ||| || |||| || ||||
Sbjct 33523 CATTTGTACCGGCAATGTAACTGCCTGTTGCACGGATGCAGTGGACATTGAGACCAATGC 33464
Query 149428 CGCCGCCGTACTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGC 149487
| ||| | ||| ||||| || || ||| || ||||||||| |||||
Sbjct 33463 CACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCCATCGATCG 33404
Query 149488 TGTCGCGCTTCATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCG 149547
||| |||||| || | || ||||| || | | ||| || |||| |||||
Sbjct 33403 AGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGTACCGGCGT 33344
Query 149548 CGAACATGGTGGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGA 149607
||| | ||| || |||||||| || | || ||| | | ||| | ||| |
Sbjct 33343 TGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGGAAGACATGAGGTTGTATGTCTCAA 33284
Query 149608 GCACGCGGTCCATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCG 149667
| || |||||||| ||||| ||||| | ||||| ||||| | ||| |||||||
Sbjct 33283 TGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATCATGTGCTGCG 33224
Query 149668 GTCGCTCCGCCAC 149680
||| ||| || ||
Sbjct 33223 GTCTCTCTGCAAC 33211
Score = 127 bits (140), Expect = 2e-24
Identities = 149/199 (75%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
||| ||||| ||||| |||||||| ||| ||| ||| ||| | ||||| ||||||||||
Sbjct 451137 GGTTGACTCCTTCTGAATATTGTAGTCGGCCAAAGTGCGACCA-TCCTCAAGCTGCTTGC 451195
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
| || ||||||| |||||||| || || || ||||| |||||||| ||||| ||
Sbjct 451196 CAGCAAAAATGAGACGCTGCTGATCAGGTGGAATGCCCTCCTTGTCCTGAATCTTGCTCT 451255
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| ||||| | | ||| || |||| |||| ||| || || || ||||
Sbjct 451256 TGACATTGTCAATGGTGTCTGATGACTCAACCTCGAGTGTGATGGTCTTTCCAGTAAGAG 451315
Query 133642 TTTTTACGAAAATCTGCAT 133660
| || || || ||||||||
Sbjct 451316 TCTTGACAAAGATCTGCAT 451334
Score = 125 bits (138), Expect = 7e-24
Identities = 148/198 (75%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| ||| ||| ||| | ||||| |||||||| ||
Sbjct 450454 GTTGACTCCTTCTGAATGTTGTAGTCGGCCAAAGTGCGACCA-TCCTCAAGCTGCTTTCC 450512
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| | ||||| ||||||||||| || || || ||||||||||| ||||| |||
Sbjct 450513 AGCAAAGATGAGACGCTGCTGGTCAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTT 450572
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| | | ||| || |||| |||| ||| || || ||||||||
Sbjct 450573 GACGTTGTCAATGGTGTCTGATGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGT 450632
Query 133643 TTTTACGAAAATCTGCAT 133660
|| |||||||| |||||
Sbjct 450633 CTTGACGAAAATTTGCAT 450650
Score = 122 bits (134), Expect = 8e-23
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| |||||||| || | | |||| |||||| |||||||||||
Sbjct 450682 GTTGACTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCA 450741
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| ||||||| ||||||||||| || || ||||| |||||||| ||||| ||||
Sbjct 450742 GCAAAAATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGCTCTTG 450801
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | |||| ||||| | | || || |||| || | ||| || || |||| |||
Sbjct 450802 ACGTTGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTC 450861
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||||||||||||
Sbjct 450862 TTAACGAAAATCTGCAT 450878
Score = 120 bits (132), Expect = 3e-22
Identities = 147/198 (74%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| || ||| ||| ||| |||||| |||||||||||
Sbjct 450910 GTTGACTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACC-GTCCTCAAGCTGCTTGCC 450968
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|| ||||||| ||||||||||| || ||||| ||||||||||| |||||| |||
Sbjct 450969 AGCAAAAATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTT 451028
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | |||| ||||| | | ||| || || | || | ||| || || |||| ||
Sbjct 451029 GACATTGTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGT 451088
Query 133643 TTTTACGAAAATCTGCAT 133660
|| |||||||| |||||
Sbjct 451089 CTTGACGAAAATTTGCAT 451106
Score = 89.7 bits (98), Expect = 5e-13
Identities = 140/195 (72%), Gaps = 4/195 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| || | | ||| ||| | || || |||||||| ||
Sbjct 451366 GTTGACTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCA-TCTTCAAGCTGCTTACC 451424
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581
||| |||| | ||||||||||| || || || ||||||||||| ||| ||| | ||
Sbjct 451425 AGCGAAAATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTC-CTGAATTTTCGACT 451483
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | |||| ||||| | || || || || | ||| | ||| ||||| || || |
Sbjct 451484 TGACATTGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTG 451543
Query 133642 TTTTTACGAAAATCT 133656
| || || || ||||
Sbjct 451544 TCTTGACAAAGATCT 451558
>seq40
Length=667070
Score = 131 bits (144), Expect = 2e-25
Identities = 147/197 (75%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCCC 133523
|| ||||| ||||| || ||||| || | | |||| ||||||||||||||||||
Sbjct 1474 GTCGACTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCA 1415
Query 133524 GCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTG 133583
|| | ||||| ||||||||||| || ||||||||||||||||| ||| || ||||
Sbjct 1414 GCAAAGATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTG 1355
Query 133584 AGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTT 133643
| | || | ||||| | || ||| || |||| ||||| ||| ||||| || || ||
Sbjct 1354 ACATTGTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTC 1295
Query 133644 TTTACGAAAATCTGCAT 133660
|| ||||| || |||||
Sbjct 1294 TTGACGAAGATTTGCAT 1278
>seq23
Length=690853
Score = 93.3 bits (102), Expect = 4e-14
Identities = 126/172 (73%), Gaps = 4/172 (2%)
Strand=Plus/Minus
Query 120354 GTACTCGCCGACGCGTTTCTCAAAAAAGTTTGTTTTGCCCTCCATCGAAATGTTGTTCAT 120413
||| || ||||| || |||||||| ||||| || ||||| | | |||||||| | |||
Sbjct 89229 GTAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCAT 89170
Query 120414 AAACTCGAACGGGTTGCTCGCGTTAAAGTA-TTTCGGCTGGCCCAACTGT-ACGAGCAGT 120471
||| || || || ||||| | || | || | ||| | || |||| | ||||| |||
Sbjct 89169 AAAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTG--CCAAGAGAGACGAGGAGT 89112
Query 120472 CGGTCCGCTACAAACTCAATGTACTCGCACATGGACTGCGCGTTCATGCCCA 120523
|| || || ||||| ||||||||||||| |||| || || || || ||||
Sbjct 89111 CGATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCA 89060
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483420534118560
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