Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_026440.1
Length=2243109
Score E
Sequences producing significant alignments: (Bits) Value
seq23 275 9e-68
seq44 122 1e-21
>seq23
Length=690853
Score = 275 bits (304), Expect = 9e-68
Identities = 419/587 (71%), Gaps = 15/587 (3%)
Strand=Plus/Plus
Query 1455730 CGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTA 1455789
||| ||| ||| ||||| ||||| ||||||||| || || ||| ||| |||||||
Sbjct 88341 CGAAAACAAGAAACGCTTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTA 88400
Query 1455790 CCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGG 1455849
| |||||||| || || ||||| ||||||||||||||| | |||||| | ||| |
Sbjct 88401 C-AAAAAGGCAGAAGCATCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGC 88459
Query 1455850 TCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906
| |||||| | ||| | ||||||||| ||| |||||| ||||||||||| |
Sbjct 88460 ACGACTGGGAGAACAAGCTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTT 88519
Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966
| ||| |||||||| |||||||| || || || || || || || || ||
Sbjct 88520 TCTTT-GCCGCCAGTGATGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAA 88578
Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026
|||||| | ||||||||||| | || || || ||||||||| ||||||||||||
Sbjct 88579 GTCCAAGTACCAGAGGCACGATGCTTCTATGGCTTCCAGATCATGGCGGAAAACATCCAC 88638
Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086
|| || |||||||| ||||| || || || ||| ||||||| | | | | | |||
Sbjct 88639 TCAGAGACCTACTCCCTCCTCATTGATACATACATCAAGGAACAAGCTCAACGGCAGCAC 88698
Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146
||||| || ||||| || | |||| | | | |||| || |||||||| ||
Sbjct 88699 CTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGC 88758
Query 1456147 TGGAT--CA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-G 1456202
||||| || || | ||| || || |||||| ||| || || | ||||| || |
Sbjct 88759 TGGATTGCAGACGACGAG----TCTAC-CTTTGCACTGCGTCTTGTGGCTTTTGCTGCTG 88813
Query 1456203 TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCC 1456262
||||||| ||||||||||| ||| ||| | |||||||||||||||||||||| || |
Sbjct 88814 TCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTC 88873
Query 1456263 TCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309
||||||| || | || ||||||||| || | ||| ||| |||||
Sbjct 88874 TCATGCCGGGAC-TCACCTTTAGCAATGAGCTCATCTCTCGTGACGA 88919
>seq44
Length=579512
Score = 122 bits (134), Expect = 1e-21
Identities = 174/244 (71%), Gaps = 6/244 (2%)
Strand=Plus/Minus
Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958
||||| || | ||||||||||| ||||||||||| ||||| || | | |||
Sbjct 33931 TACTCTTCTTACATCTACAAGGTCCTCAAGCAGGTCCACCCAGACACTGGT-----ATC- 33878
Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018
||| |||| ||||||| ||| | ||||| |||||||||||||| | || ||| ||| |
Sbjct 33877 TCCGGCAAGGCCATGTCCATCCTCAACTCATTTGTCAACGACATCTTTGAGCGCGTCGCC 33818
Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078
| ||||| || || || ||||||| || ||| | |||||||||||
Sbjct 33817 TCTGAGGCATCCAAGCTCGCTGCCTACAACAAGAAGTCAACCATCTCCTCGCGCGAGATC 33758
Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138
||||| | || || || ||| | | || || || |||| |||||||||||| ||||||
Sbjct 33757 CAGACATCTGTCCGTCTCATCCTCCCAGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGC 33698
Query 725139 ACCA 725142
||||
Sbjct 33697 ACCA 33694
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7177806956119128
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |