Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq23 275 9e-68 seq44 122 1e-21 >seq23 Length=690853 Score = 275 bits (304), Expect = 9e-68 Identities = 419/587 (71%), Gaps = 15/587 (3%) Strand=Plus/Plus Query 1455730 CGATAACCCGAACCGCTTTGTCCTGTTCCCCATCCGCTACCAGCGGATATGGGAAATGTA 1455789 ||| ||| ||| ||||| ||||| ||||||||| || || ||| ||| ||||||| Sbjct 88341 CGAAAACAAGAAACGCTTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTA 88400 Query 1455790 CCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACCTCGGCGCCGACACGG 1455849 | |||||||| || || ||||| ||||||||||||||| | |||||| | ||| | Sbjct 88401 C-AAAAAGGCAGAAGCATCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCTGC 88459 Query 1455850 TCCACTGGGTGTC---GCTGAGCGACGACGAGCGCCATTTCATCAAGCACGTCCTCGCCT 1455906 | |||||| | ||| | ||||||||| ||| |||||| ||||||||||| | Sbjct 88460 ACGACTGGGAGAACAAGCTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTT 88519 Query 1455907 TTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAG 1455966 | ||| |||||||| |||||||| || || || || || || || || || Sbjct 88520 TCTTT-GCCGCCAGTGATGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAA 88578 Query 1455967 GTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCAC 1456026 |||||| | ||||||||||| | || || || ||||||||| |||||||||||| Sbjct 88579 GTCCAAGTACCAGAGGCACGATGCTTCTATGGCTTCCAGATCATGGCGGAAAACATCCAC 88638 Query 1456027 TCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGACCCGGTCGAGAAGGACCAC 1456086 || || |||||||| ||||| || || || ||| ||||||| | | | | | ||| Sbjct 88639 TCAGAGACCTACTCCCTCCTCATTGATACATACATCAAGGAACAAGCTCAACGGCAGCAC 88698 Query 1456087 CTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGACTGGGCGATGAAG 1456146 ||||| || ||||| || | |||| | | | |||| || |||||||| || Sbjct 88699 CTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCACTGCGC 88758 Query 1456147 TGGAT--CA-ACAAGGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCGGCTTTGCCGC-G 1456202 ||||| || || | ||| || || |||||| ||| || || | ||||| || | Sbjct 88759 TGGATTGCAGACGACGAG----TCTAC-CTTTGCACTGCGTCTTGTGGCTTTTGCTGCTG 88813 Query 1456203 TCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCGCCATCTTTTGGCTCAAGAAGCGCGGCC 1456262 ||||||| ||||||||||| ||| ||| | |||||||||||||||||||||| || | Sbjct 88814 TCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTC 88873 Query 1456263 TCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 ||||||| || | || ||||||||| || | ||| ||| ||||| Sbjct 88874 TCATGCCGGGAC-TCACCTTTAGCAATGAGCTCATCTCTCGTGACGA 88919 >seq44 Length=579512 Score = 122 bits (134), Expect = 1e-21 Identities = 174/244 (71%), Gaps = 6/244 (2%) Strand=Plus/Minus Query 724899 TACTCGTCCTTTATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCC 724958 ||||| || | ||||||||||| ||||||||||| ||||| || | | ||| Sbjct 33931 TACTCTTCTTACATCTACAAGGTCCTCAAGCAGGTCCACCCAGACACTGGT-----ATC- 33878 Query 724959 TCCAACAAGTCCATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGC 725018 ||| |||| ||||||| ||| | ||||| |||||||||||||| | || ||| ||| | Sbjct 33877 TCCGGCAAGGCCATGTCCATCCTCAACTCATTTGTCAACGACATCTTTGAGCGCGTCGCC 33818 Query 725019 ACCGAGGCCGGTCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATC 725078 | ||||| || || || ||||||| || ||| | ||||||||||| Sbjct 33817 TCTGAGGCATCCAAGCTCGCTGCCTACAACAAGAAGTCAACCATCTCCTCGCGCGAGATC 33758 Query 725079 CAGACCGCCGTGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGC 725138 ||||| | || || || ||| | | || || || |||| |||||||||||| |||||| Sbjct 33757 CAGACATCTGTCCGTCTCATCCTCCCAGGAGAGCTCGCCAAGCACGCCGTCTCTGAGGGC 33698 Query 725139 ACCA 725142 |||| Sbjct 33697 ACCA 33694 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177806956119128