Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq43 111 1e-19 seq40 82.4 7e-11 >seq43 Length=605699 Score = 111 bits (122), Expect = 1e-19 Identities = 169/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 35502 CTTTATT-TCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTG 35560 ||||| | ||| ||||| | | ||||||||| || || || |||||| ||||||||| Sbjct 450415 CTTTACTGTCCTCCACGAAGACGCAACACCAAGTGCAATGTTGACTCCTTCTGAATGTTG 450474 Query 35561 TAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGG 35620 || |||||||| || || | || || |||||||| || ||||| || | ||||||||| Sbjct 450475 TAGTCGGCCAAAGTGCGACCATCCTCAAGCTGCTTTCCAGCAAAGATGAGACGCTGCTGG 450534 Query 35621 TCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCT 35679 || | |||| | |||||||| ||||| ||| | |||| | | ||||| Sbjct 450535 TCAGGTGGAATACCTTCCTTGTCTTGAATCTTGCTCTTGA-CGTTGTCAATGGTGTCTGA 450593 Query 35680 CGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || || ||||| | ||||| || || || |||| ||| || || || || ||||| Sbjct 450594 TGACTCTACCTCGAGTGTGATGGTCTTTCCAGTCAGAGTCTTGACGAAAATTTGCAT 450650 Score = 89.7 bits (98), Expect = 5e-13 Identities = 137/193 (71%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || || ||||| || || | || || |||| || |||||||| || ||||| Sbjct 450687 CTCCTTCTGGATATTGTAGTCTGCAAGCGTGCGGCCGTCCTCAAGCTGCTTGCCAGCAAA 450746 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | |||| || ||||||||| ||||| ||| | || Sbjct 450747 AATGAGACGCTGCTGGTCAGGTGGAATGCCCTCCTTGTCTTGAATCTTGCTCTTGA-CGT 450805 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || | | ||||| ||||| || || | || || || || || |||||||| || | Sbjct 450806 TGTCAATGGTGTCTGATGATTCGACTTCGAGTGTAATGGTCTTTCCAGTCAAAGTCTTAA 450865 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 450866 CGAAAATCTGCAT 450878 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || ||||| || || |||| || |||||||| || ||||| Sbjct 450915 CTCCTTCTGGATGTTGTAGTCTGCCAAAGTGCGACCGTCCTCAAGCTGCTTGCCAGCAAA 450974 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | | |||||||| |||||| ||| | | | Sbjct 450975 AATGAGACGCTGCTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTGCTCTTGACATT 451034 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | || || || || || ||||| || || || Sbjct 451035 GTCAATGGTGTCTGATGACTCTACCTCAAGTGTAATGGTCTTTCCAGTCAACGTCTTGAC 451094 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 451095 GAAAATTTGCAT 451106 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || | || || ||||||||||| || || Sbjct 451371 CTCCTTCTGGATGTTGTAGTCTGCAAGTGTGCGACCATCTTCAAGCTGCTTACCAGCGAA 451430 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAG 35663 ||||| ||||||||||||| |||| | ||||||||| ||| ||| | ||| | | Sbjct 451431 AATCAAACGCTGCTGGTCCGGTGGAATCCCTTCCTTGTCC-TGAATTTTCGACTTGACAT 451489 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | ||||| ||||| ||||| | || || || || || || | || || | Sbjct 451490 TGTCAATGGTGTCTGAGGATTCAACCTCAAGGGTAATGGTCTTGCCAGTAAGTGTCTTGA 451549 Query 35724 CAAATATCT 35732 |||| |||| Sbjct 451550 CAAAGATCT 451558 >seq40 Length=667070 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | || || |||| || |||||||| || ||||| Sbjct 1469 CTCCTTCTGGATGTTGTAGTCTGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAA 1410 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | ||||||||||| | || | || ||||||||| ||| || ||| | | | Sbjct 1409 GATGAGACGCTGCTGGTCAGGCGGGATGCCTTCCTTGTCCTGGATTTTCGACTTGACATT 1350 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| || || ||||| | ||||| || || ||||| | || || || Sbjct 1349 GTCGATTGTGTCTGAGGACTCGACCTCGAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 1290 Query 35725 AAATATCTGCATTCT 35739 || || ||||| || Sbjct 1289 GAAGATTTGCATCCT 1275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793352063520