Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq43 179 5e-40
seq23 156 6e-33
>seq43
Length=605699
Score = 179 bits (198), Expect = 5e-40
Identities = 534/809 (66%), Gaps = 20/809 (2%)
Strand=Plus/Minus
Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384
||||| ||||| | || || || ||||| || || || || | ||| || ||| |
Sbjct 34019 ATCTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGG 33960
Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444
|| |||||||||||||| || || || ||| | || || ||| | || | |||| ||||
Sbjct 33959 TTGCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATA 33900
Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTG-TAACGCTTCT--CTTTTTCATAT 69501
| | ||| | | || || || |||||| | || | | | || || ||
Sbjct 33899 GCGTACCACAGCTTCTGTGCCTTGAT---GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843
Query 69502 T--GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCAT 69559
| ||||| | || ||| |||||||| || | || || | || ||||||||||| |
Sbjct 33842 TTGGTGTACAAGGC--TTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGT 33785
Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619
| || ||||| | |||||| | ||| |||| || || ||||| || ||||| || |
Sbjct 33784 TGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGA 33725
Query 69620 TCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAtttttttt 69677
|||| ||||| ||| || | || | | | ||||| || || || | ||
Sbjct 33724 TCCAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGC 33666
Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCC 69737
||| || || || | | || || | |||||||| || | || || || | | | ||
Sbjct 33665 AAG-TCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACC 33607
Query 69738 CGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCAT 69797
|| || || || || || || || | || ||||||||||| || |||| | ||||||
Sbjct 33606 TGGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCAT 33547
Query 69798 CGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT 69857
|| || || || || ||| |||||||||| || | ||| ||||| ||| |||| || ||
Sbjct 33546 GGGGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGAT 33487
Query 69858 --ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC 69915
| | || | ||||| || || || || | |||||||| | ||||| |||
Sbjct 33486 GCAGTGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTG 33429
Query 69916 AATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGAC 69975
| |||||| || || || || || ||||| |||| | | ||| || || ||
Sbjct 33428 AGTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAG 33369
Query 69976 ATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTT 70035
| ||| | | || || || || || | ||||| |||||||| ||||| ||
Sbjct 33368 AGTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTG 33309
Query 70036 TCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTAT 70094
||| | || |||||||| ||||| || ||| || || ||| |||||| || |
Sbjct 33308 GAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCAC-CATGAATGCCAAC 33250
Query 70095 CGCGACACGCATCAACATATGCTGAGGTC 70123
||||||||||| | ||| ||||| ||||
Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTC 33221
>seq23
Length=690853
Score = 156 bits (172), Expect = 6e-33
Identities = 419/633 (66%), Gaps = 16/633 (3%)
Strand=Plus/Minus
Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665
|||||| | |||||||| || || || ||||| || | | || | || ||
Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895
Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725
||| |||||||| ||||| ||||||||||| ||||||||||| |||| || || || |
Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835
Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785
|||| || ||||| || || || || ||||| || ||||| | | | | | | | |
Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775
Query 39786 CAT--TATG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842
| | | || ||||| | ||||||| || ||||| | ||| | || || ||||| |
Sbjct 88774 CGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCT 88715
Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902
| || |||| ||||| | || || | | || || | |||||||| || | |
Sbjct 88714 CGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGA 88655
Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCC---ATCTGAAATCCGTAAAAACATC 39959
| || | ||||| ||||||||||| |||| ||||| || || || || ||||
Sbjct 88654 GGGAGTAGGTCTCTGAGTGGATGTTTTC---CGCCATGATCTGGAAGCCATAGAAGCATC 88598
Query 39960 TTGCTTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017
||| || | | ||| || || || | ||| | || |||||||||||| || ||
Sbjct 88597 GTGCCTCTGGTACTTGGACTTCGTTGGAGAAA--CGCTCGAGCAAATTTTCATTGACAAT 88540
Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGT 40075
|||||||| |||||||| || || | || || || || | ||| ||| | |
Sbjct 88539 GCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTT 88480
Query 40076 G-TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134
| | || | |||||| | | || || || | || | || || || ||||| ||
Sbjct 88479 GAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAA 88420
Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAAC 40194
|| || ||||||||||||||||| | ||| || || |||| | || || || | ||
Sbjct 88419 GGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGAC 88360
Query 40195 AAATCTATTTGGATTTTTTGCAAGGATGGGTTC 40227
|| | || |||| || |||| ||||||
Sbjct 88359 GAAGCGTTTCTTGTTTTCGGCGAGGAGGGGTTC 88327
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686908422200160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |