Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq43 179 5e-40 seq23 156 6e-33 >seq43 Length=605699 Score = 179 bits (198), Expect = 5e-40 Identities = 534/809 (66%), Gaps = 20/809 (2%) Strand=Plus/Minus Query 69325 ATCTCTGTACATAGATTACTACATTTGATAGTCCCCAGATTTTGCTGATTACTCTTTTTG 69384 ||||| ||||| | || || || ||||| || || || || | ||| || ||| | Sbjct 34019 ATCTCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGG 33960 Query 69385 TTACAGGCGTCCTTGTAAAGAATAAACGGAGTACCAGTTTCAATCTGAGATTCGATAATA 69444 || |||||||||||||| || || || ||| | || || ||| | || | |||| |||| Sbjct 33959 TTGCAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATA 33900 Query 69445 GATTTCCAAACGACCCTAGCATTTATTACGGTCTTG-TAACGCTTCT--CTTTTTCATAT 69501 | | ||| | | || || || |||||| | || | | | || || || Sbjct 33899 GCGTACCACAGCTTCTGTGCCTTGAT---GGTCTTCATGACCTTGCCGGCCTTCTCGTAC 33843 Query 69502 T--GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCAT 69559 | ||||| | || ||| |||||||| || | || || | || ||||||||||| | Sbjct 33842 TTGGTGTACAAGGC--TTCAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGT 33785 Query 69560 TTGGACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAA 69619 | || ||||| | |||||| | ||| |||| || || ||||| || ||||| || | Sbjct 33784 TGGGGCACATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGA 33725 Query 69620 TCCAAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCC-TGTAtttttttt 69677 |||| ||||| ||| || | || | | | ||||| || || || | || Sbjct 33724 TCCAGAGAGC-ATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGC 33666 Query 69678 AAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCCATGACTCC 69737 ||| || || || | | || || | |||||||| || | || || || | | | || Sbjct 33665 AAG-TCAAGGAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACC 33607 Query 69738 CGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGACTCTCAGCAT 69797 || || || || || || || || | || ||||||||||| || |||| | |||||| Sbjct 33606 TGGACGCTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCAT 33547 Query 69798 CGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAAT 69857 || || || || || ||| |||||||||| || | ||| ||||| ||| |||| || || Sbjct 33546 GGGGATGATGCCGTTGGATGTACCATTTGTACCGGCAATGTAACTGCCTGTTGCACGGAT 33487 Query 69858 --ATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTC 69915 | | || | ||||| || || || || | |||||||| | ||||| ||| Sbjct 33486 GCAGTGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTG 33429 Query 69916 AATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGAC 69975 | |||||| || || || || || ||||| |||| | | ||| || || || Sbjct 33428 AGTGTGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAG 33369 Query 69976 ATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTT 70035 | ||| | | || || || || || | ||||| |||||||| ||||| || Sbjct 33368 AGTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTG 33309 Query 70036 TCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAATTCCTAT 70094 ||| | || |||||||| ||||| || ||| || || ||| |||||| || | Sbjct 33308 GAAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCAC-CATGAATGCCAAC 33250 Query 70095 CGCGACACGCATCAACATATGCTGAGGTC 70123 ||||||||||| | ||| ||||| |||| Sbjct 33249 AGCGACACGCATGATCATGTGCTGCGGTC 33221 >seq23 Length=690853 Score = 156 bits (172), Expect = 6e-33 Identities = 419/633 (66%), Gaps = 16/633 (3%) Strand=Plus/Minus Query 39606 TAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAG 39665 |||||| | |||||||| || || || ||||| || | | || | || || Sbjct 88954 TAAACAAGAGACAGGCGAAATCTGTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGC 88895 Query 39666 AAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATC 39725 ||| |||||||| ||||| ||||||||||| ||||||||||| |||| || || || | Sbjct 88894 TAAAGGTGAGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGC 88835 Query 39726 CAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTAT 39785 |||| || ||||| || || || || ||||| || ||||| | | | | | | | | Sbjct 88834 CAGAGAAAAAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACT 88775 Query 39786 CAT--TATG-TATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTT 39842 | | | || ||||| | ||||||| || ||||| | ||| | || || ||||| | Sbjct 88774 CGTCGTCTGCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCT 88715 Query 39843 CTATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACA 39902 | || |||| ||||| | || || | | || || | |||||||| || | | Sbjct 88714 CGATTGCATCGAAGAGGTGCTGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAGGA 88655 Query 39903 GACTATACATTTCTGAATGGATGTTTTCAATCGCC---ATCTGAAATCCGTAAAAACATC 39959 | || | ||||| ||||||||||| |||| ||||| || || || || |||| Sbjct 88654 GGGAGTAGGTCTCTGAGTGGATGTTTTC---CGCCATGATCTGGAAGCCATAGAAGCATC 88598 Query 39960 TTGCTTCAGTAATTTGTACCTC--TGAACAAAATCTTTCCGCCAAATTTTCATTCACTAT 40017 ||| || | | ||| || || || | ||| | || |||||||||||| || || Sbjct 88597 GTGCCTCTGGTACTTGGACTTCGTTGGAGAAA--CGCTCGAGCAAATTTTCATTGACAAT 88540 Query 40018 TCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCG--GGT 40075 |||||||| |||||||| || || | || || || || | ||| ||| | | Sbjct 88539 GCCATCACTGGCGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTT 88480 Query 40076 G-TCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAA 40134 | | || | |||||| | | || || || | || | || || || ||||| || Sbjct 88479 GAGCTTGTTCTCCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAA 88420 Query 40135 CGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAAAAATAAC 40194 || || ||||||||||||||||| | ||| || || |||| | || || || | || Sbjct 88419 GGATGCTTCTGCCTTTTTGTACATTTGCCAAATCTCGTGATACTTGATGGGGAAGAGGAC 88360 Query 40195 AAATCTATTTGGATTTTTTGCAAGGATGGGTTC 40227 || | || |||| || |||| |||||| Sbjct 88359 GAAGCGTTTCTTGTTTTCGGCGAGGAGGGGTTC 88327 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686908422200160