Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq23 129 5e-25
seq6 125 6e-24
>seq23
Length=690853
Score = 129 bits (142), Expect = 5e-25
Identities = 381/576 (66%), Gaps = 26/576 (5%)
Strand=Plus/Plus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|| ||| | || || || | ||||| || || ||||||||||||||||| ||| | ||
Sbjct 88357 TTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCA 88416
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA--TTGGATTGCAT 43817
|| || ||||| || || || |||| | | || ||| | |||| | ||| ||
Sbjct 88417 TCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCT-GCACGACTGGGAGAACAA 88475
Query 43818 TAA-AACCACAAGAAAAACATTTT-ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875
||| || | || | | || || || || | || || ||||| || || ||
Sbjct 88476 GCTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGA 88535
Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC 43935
|| || ||||||||||||||| | || || | | ||||| ||| ||||||| ||
Sbjct 88536 TGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGC 88595
Query 43936 ACGATGTTTTTATGGGTTTCAAAT--TGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993
|||||| || ||||| || || || || | ||||| || || || || | |||
Sbjct 88596 ACGATGCTTCTATGGCTTCCAGATCATGGC--GGAAAACATCCACTCAGAGACCTACTCC 88653
Query 43994 CTTCTGATAGATACGTACATCA---AAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050
|| || || ||||| ||||||| || | | || | |||| | | || ||||
Sbjct 88654 CTCCTCATTGATACATACATCAAGGAACAAGCTCAACGGCAGCACC---TCTTCGATGCA 88710
Query 44051 ATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109
|| || ||| | || ||| || || || |||||||||||||| || ||||| | |
Sbjct 88711 ATCGAGACAATCCCGTGC-ATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGAT---TGC 88766
Query 44110 AAATGA------TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163
| | || | | |||| | || ||||| || ||||| | ||| || || || ||
Sbjct 88767 AGACGACGAGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTT 88826
Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223
|| || || ||||| || |||| |||||| | ||||| || ||| | ||||| || |
Sbjct 88827 TTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACT 88886
Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259
|| ||| |||||| | || |||||| || ||
Sbjct 88887 CACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGG 88922
>seq6
Length=440545
Score = 125 bits (138), Expect = 6e-24
Identities = 228/329 (69%), Gaps = 10/329 (3%)
Strand=Plus/Minus
Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488
|||||||| || ||||||||||||||| | || || | ||| |||||||| || || |||
Sbjct 174825 CCCAAAATCGTTAATGGTCCTGAAATCCTCAACAAGTTTGTGGGTCAATCAGAGGAGAAT 174766
Query 19489 GT-ACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTT 19546
| | || | | ||||| || || ||| ||| | | || | |||| | | | ||||
Sbjct 174765 ATCAGGAAG-CTCTTTGCAGATGCGGAA-AAGGAGTACAAGGAGAAGGGTGACGAGAGTT 174708
Query 19547 CTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC----- 19601
| || ||||| || || | ||||| | || ||||| || || || | || ||
Sbjct 174707 CGTTACACATCATTATCTTTGATGAGCTCGATGCAATTTGCAAACAGCGTGGATCTACAG 174648
Query 19602 -TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTG 19660
||||| | || || |||| | || |||||||| || || || ||| | || ||||
Sbjct 174647 GTGGTGGCACGGGTGTCGGTGACTCGGTGGTCAATCAGCTGCTCTCCAAAATGGATGGTG 174588
Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720
| ||||||| || ||||| | ||||||| ||||| || |||| || | || |||
Sbjct 174587 TCGACCAACTCAACAATATCCTCATTATTGGTATGACCAACCGACTAGACATGATTGACG 174528
Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAA 19749
||| | ||||||| ||||| ||||||
Sbjct 174527 AAGCCCTGCTACGACCAGGTCGATTGGAA 174499
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397455786864220
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |