Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq23 129 5e-25 seq6 125 6e-24 >seq23 Length=690853 Score = 129 bits (142), Expect = 5e-25 Identities = 381/576 (66%), Gaps = 26/576 (5%) Strand=Plus/Plus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 || ||| | || || || | ||||| || || ||||||||||||||||| ||| | || Sbjct 88357 TTCGTCCTCTTCCCCATCAAGTATCACGAGATTTGGCAAATGTACAAAAAGGCAGAAGCA 88416 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACA--TTGGATTGCAT 43817 || || ||||| || || || |||| | | || ||| | |||| | ||| || Sbjct 88417 TCCTTCTGGACCGCCGAGGAGATTGACCTCTCCAAGGACCT-GCACGACTGGGAGAACAA 88475 Query 43818 TAA-AACCACAAGAAAAACATTTT-ATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGA 43875 ||| || | || | | || || || || | || || ||||| || || || Sbjct 88476 GCTCAACGACGACGAACGCTTCTTCATCTCCCACGTCCTCGCTTTCTTTGCCGCCAGTGA 88535 Query 43876 CGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGC 43935 || || ||||||||||||||| | || || | | ||||| ||| ||||||| || Sbjct 88536 TGGCATTGTCAATGAAAATTTGCTCGAGCGTTTCTCCAACGAAGTCCAAGTACCAGAGGC 88595 Query 43936 ACGATGTTTTTATGGGTTTCAAAT--TGCCATAGAAAATATTCATTCGGAAATGTACAGT 43993 |||||| || ||||| || || || || | ||||| || || || || | ||| Sbjct 88596 ACGATGCTTCTATGGCTTCCAGATCATGGC--GGAAAACATCCACTCAGAGACCTACTCC 88653 Query 43994 CTTCTGATAGATACGTACATCA---AAGATGGGCACGAGAAGCATCGATTGTTTAATGCG 44050 || || || ||||| ||||||| || | | || | |||| | | || |||| Sbjct 88654 CTCCTCATTGATACATACATCAAGGAACAAGCTCAACGGCAGCACC---TCTTCGATGCA 88710 Query 44051 ATAGAAACAGTACC-TGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGATAAATTC 44109 || || ||| | || ||| || || || |||||||||||||| || ||||| | | Sbjct 88711 ATCGAGACAATCCCGTGC-ATCAAGCAAAAAGCAGACTGGGCACTGCGCTGGAT---TGC 88766 Query 44110 AAATGA------TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTT 44163 | | || | | |||| | || ||||| || ||||| | ||| || || || || Sbjct 88767 AGACGACGAGTCTACCTTTGCACTGCGTCTTGTGGCTTTTGCTGCTGTCGAGGGAATCTT 88826 Query 44164 CTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTT 44223 || || || ||||| || |||| |||||| | ||||| || ||| | ||||| || | Sbjct 88827 TTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTGGTCTCATGCCGGGACT 88886 Query 44224 GACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGG 44259 || ||| |||||| | || |||||| || || Sbjct 88887 CACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGG 88922 >seq6 Length=440545 Score = 125 bits (138), Expect = 6e-24 Identities = 228/329 (69%), Gaps = 10/329 (3%) Strand=Plus/Minus Query 19429 CCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATCGGAAGAAAAT 19488 |||||||| || ||||||||||||||| | || || | ||| |||||||| || || ||| Sbjct 174825 CCCAAAATCGTTAATGGTCCTGAAATCCTCAACAAGTTTGTGGGTCAATCAGAGGAGAAT 174766 Query 19489 GT-ACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG-CAAAAGTT 19546 | | || | | ||||| || || ||| ||| | | || | |||| | | | |||| Sbjct 174765 ATCAGGAAG-CTCTTTGCAGATGCGGAA-AAGGAGTACAAGGAGAAGGGTGACGAGAGTT 174708 Query 19547 CTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGTTC----- 19601 | || ||||| || || | ||||| | || ||||| || || || | || || Sbjct 174707 CGTTACACATCATTATCTTTGATGAGCTCGATGCAATTTGCAAACAGCGTGGATCTACAG 174648 Query 19602 -TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTG 19660 ||||| | || || |||| | || |||||||| || || || ||| | || |||| Sbjct 174647 GTGGTGGCACGGGTGTCGGTGACTCGGTGGTCAATCAGCTGCTCTCCAAAATGGATGGTG 174588 Query 19661 TTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACA 19720 | ||||||| || ||||| | ||||||| ||||| || |||| || | || ||| Sbjct 174587 TCGACCAACTCAACAATATCCTCATTATTGGTATGACCAACCGACTAGACATGATTGACG 174528 Query 19721 GCGCCTTATTACGACCCGGTCGGTTGGAA 19749 ||| | ||||||| ||||| |||||| Sbjct 174527 AAGCCCTGCTACGACCAGGTCGATTGGAA 174499 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397455786864220