Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_028091.1
Length=196300
Score E
Sequences producing significant alignments: (Bits) Value
seq43 248 1e-60
seq23 129 7e-25
seq2 114 2e-20
seq11 105 8e-18
>seq43
Length=605699
Score = 248 bits (274), Expect = 1e-60
Identities = 979/1515 (65%), Gaps = 65/1515 (4%)
Strand=Plus/Minus
Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665
||| ||| |||||||| || |||||||| || |||| ||| || |||| |
Sbjct 34709 ATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTTGAGCAACCAA 34650
Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725
||| || | |||||||| || ||| | | | ||| ||||| | |||||
Sbjct 34649 GGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAG 34590
Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785
|| |||||||||||||| ||||| || |||| ||||| || || ||||| |||||
Sbjct 34589 GGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCA 34530
Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGT 110843
||| || ||| || | ||| | || ||| || | || ||||| ||||||
Sbjct 34529 CACAACAGGGAGTTGCGGATACCATGCT--TTGCAATCTGCTCTTTGAGCGTCGCCCAGT 34472
Query 110844 CGTAGTTGAGCTTGGTT----TCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899
| || |||||||| | || |||| ||| |||| |||| | | || || ||
Sbjct 34471 CCCAG---AGCTTGGTGGGTGTGACATTCC-ACAAGTCATACTGCAAAAGTCCCTGAGAG 34416
Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 110959
|| || || ||||| |||| || | ||| | ||| |||| ||||| ||
Sbjct 34415 GCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAGGCT 34356
Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019
|| || | |||| || ||||| |||||||| | |||| ||||||||| ||
Sbjct 34355 TCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGC 34296
Query 111020 GAATCAAATGCGTAGCGGCA---CAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076
|| || |||| | ||| | | || || |||| ||||||||||| ||||| | |
Sbjct 34295 GAGTCGAATG-GCAGCTTAAGTGCCAAG--AAGGCATCGGCGAGACCTTGCACACCAAGA 34239
Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAAATTT 111133
|| || |||| ||| ||| | || || ||| ||| |||| | || || | ||
Sbjct 34238 CCGATGGGTCGGTGACGCTTGTTGGAA---CGCTCAGCTTCAATGACTGGGTAGTAGTTG 34182
Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193
||| |||| ||| | || | ||||| ||| | || || || || || |
Sbjct 34181 ACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTG 34122
Query 111194 TAATCAAAAGTGCGAGTCTCTTCAT---TGAC-AT--ACTTTGGAAGGGCGATTGATGCC 111247
| || | | | || ||| | || | || | | || | ||| || || ||
Sbjct 34121 AAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGAGGCG 34062
Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307
| |||||| |||||| |||||| | | |||||| | ||| || ||||| ||||||
Sbjct 34061 AGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTG 34002
Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367
| ||| || || || | ||||| ||||| ||| |||||| || ||||||||
Sbjct 34001 CTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAC 33942
Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGC 111426
|||||| |||| | |||||||| || || | | ||||||||| | ||| | | || |
Sbjct 33941 AGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGT 33882
Query 111427 GGCTGGTACAATGGCGTTG--GCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTC 111483
| || | |||| || | || | || || ||||||||| ||||| | ||||||
Sbjct 33881 GCCTTG----ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTC 33826
Query 111484 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543
||| || || || | | ||| | ||| || | || || || | || |||||
Sbjct 33825 AAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCA 33766
Query 111544 TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 111603
| ||| ||||| || ||||||||||| || || || ||||| || | | || |
Sbjct 33765 CTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAA 33706
Query 111604 ATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662
|| | | | | || ||||||| | || ||||| || || |||||||| | | ||
Sbjct 33705 GTCGCGTGCGCGGA-CCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGA 33647
Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716
| || |||||||||||||||| || | || | | || | ||||| |||
Sbjct 33646 TGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACC---TGGACGCTTGTTGCCAC 33590
Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776
|||| | ||||| | || ||| ||| || || || ||||| || || || || | |
Sbjct 33589 CTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530
Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT--CAC--AT-CA-TGGATGT 111830
|| ||||||||| || ||| | | || || | ||| || || |||| |
Sbjct 33529 ATGTACCATTTGTACCGGCAATG------TAACTGCCTGTTGCACGGATGCAGTGGACAT 33476
Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890
| ||||| || || || ||| ||||| |||||| | || || | ||||
Sbjct 33475 TGAGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGA 33416
Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950
| || | ||| ||||| ||||| | | || |||||||||| || | || || | |
Sbjct 33415 TGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGG 33356
Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTT 112008
| ||||| || ||||||||||| || | |||||| ||| | ||||| |||||
Sbjct 33355 GCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAG 33298
Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068
|| ||||||||| | | | |||||||| || || || ||||| | ||||| |||||
Sbjct 33297 GTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCAT 33238
Query 112069 GAACATGTACTGTGG 112083
|| ||||| ||| ||
Sbjct 33237 GATCATGTGCTGCGG 33223
>seq23
Length=690853
Score = 129 bits (142), Expect = 7e-25
Identities = 378/575 (66%), Gaps = 12/575 (2%)
Strand=Plus/Minus
Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430
||||| ||||| ||||||||||||||||||||||| ||| | || |||||| ||||||
Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169
Query 122431 AAGTCAAATGGATTCTTCGCGT--TCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488
|||||||||||||| | | || | || | || |||| |||||| |
Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTG--TTGCCAAGAGAGACGAGGAGTC 89111
Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548
|||| | ||| | |||||||||||| ||| || | || ||||| | | | |
Sbjct 89110 GATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGGC 89051
Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608
|||| || | ||| || ||| | | |||||||||||| || || | | |||| | |
Sbjct 89050 ATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCTT 88991
Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACGGCAAACTCC 122667
| | || | | || | || ||| | || | || || ||| || ||
Sbjct 88990 GTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAATCT 88932
Query 122668 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGA 122727
|||||||||||| || || || || || ||||| ||| || || |||||||||
Sbjct 88931 GTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGA 88872
Query 122728 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 122787
|| |||||||| | |||| | || | | ||| || || ||||| ||||| ||||| |||
Sbjct 88871 CCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACA 88812
Query 122788 CACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTC 122844
||||| || | ||| || || |||| ||||| | | | ||| ||| |
Sbjct 88811 GCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCCAGCGC 88755
Query 122845 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 122904
| |||||| | || || | || || || || | || | ||| || || || | |||
Sbjct 88754 AGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGC 88695
Query 122905 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939
| | || || | ||||| |||||| | |||||
Sbjct 88694 TGCCGTTGAGCTTGTTCCTTGATGTATGTATCAAT 88660
>seq2
Length=565986
Score = 114 bits (126), Expect = 2e-20
Identities = 292/438 (67%), Gaps = 11/438 (3%)
Strand=Plus/Minus
Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596
|| || ||||||||||| ||| | || || | |||| ||| | ||||| || |||
Sbjct 335669 TCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-GCT 335611
Query 11597 GGCATA----CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652
| || | |||||| || || ||| || | || ||||| ||||| | |||||
Sbjct 335610 GCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAGAC 335551
Query 11653 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712
|| || ||| ||| | ||| || | |||| | ||||| || | | ||||||
Sbjct 335550 GATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCCAC 335491
Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATTTGATT 11771
||| |||||||| ||||| || | || || | | ||| | ||| || || || ||
Sbjct 335490 ACCGACAAACATTTCCACGAACTCTGAACCACTGACGCTGAA-GAAAGGTACGCCTGCTT 335432
Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831
|||| || | ||| || || || |||||||| ||||||||| ||| | |||| ||
Sbjct 335431 CACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAATGG 335372
Query 11832 CGCCTCGGGGGATCTTGGCACCA--CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATC 11889
| ||||| ||||||||||| ||| |||| ||| || | || | |||||| || |
Sbjct 335371 CACCTCGAGGGATCTTGGCGCCAAGCTTC--TCATAGATCCCAGGCTCCTTGAGGAACTT 335314
Query 11890 CACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAGCGGGT 11949
|||| || || || ||||| || | || || ||||||| |||| |||
Sbjct 335313 GACAAATTCCATAATCTCCTCTTTCGCTTCATCTGCACCAGCAACATCCTTGAACTTGGT 335254
Query 11950 TTTAATCTCCTGTTCAGC 11967
||| || ||| ||||||
Sbjct 335253 TTTGATGTCCGTTTCAGC 335236
>seq11
Length=330268
Score = 105 bits (116), Expect = 8e-18
Identities = 174/246 (71%), Gaps = 4/246 (2%)
Strand=Plus/Plus
Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGC-TCAAGAAGGTTAA 181860
||| |||||||||||| | |||| ||||| ||||||||| ||| |||||| || |
Sbjct 286215 AGCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAGACA-TTGA 286273
Query 181861 TGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTT 181920
||||||||| || | || | ||||| || ||||| | |||||||| ||||
Sbjct 286274 TGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTT 286333
Query 181921 CACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGC-CAACTGTGCCACCTTCATT 181979
||||||| ||||| || | | || |||| || ||| | | ||| || ||||| |||
Sbjct 286334 CACCGTGATGGTAGGCAGTGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGATT 286392
Query 181980 TCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGA 182039
|| | ||||| || | |||||||||| ||| | ||| | ||| ||||||| |
Sbjct 286393 TCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGAAA 286452
Query 182040 CCATCC 182045
||||||
Sbjct 286453 CCATCC 286458
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 628031654582400
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