Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq43 248 1e-60 seq23 129 7e-25 seq2 114 2e-20 seq11 105 8e-18 >seq43 Length=605699 Score = 248 bits (274), Expect = 1e-60 Identities = 979/1515 (65%), Gaps = 65/1515 (4%) Strand=Plus/Minus Query 110606 ATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTCTTGAGGTCATTGACGAGGTGC 110665 ||| ||| |||||||| || |||||||| || |||| ||| || |||| | Sbjct 34709 ATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTTGAGCAACCAA 34650 Query 110666 TTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTCAGGTAGATGTTTGTTGTGTAT 110725 ||| || | |||||||| || ||| | | | ||| ||||| | ||||| Sbjct 34649 GGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGCTCGTGTAG 34590 Query 110726 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 110785 || |||||||||||||| ||||| || |||| ||||| || || ||||| ||||| Sbjct 34589 GGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCATCGGTGCA 34530 Query 110786 ATCAAAAGACTGTTACGAAGACCCTTCTCCTTG--ATGCGTTCCTTGAGAACATCCCAGT 110843 ||| || ||| || | ||| | || ||| || | || ||||| |||||| Sbjct 34529 CACAACAGGGAGTTGCGGATACCATGCT--TTGCAATCTGCTCTTTGAGCGTCGCCCAGT 34472 Query 110844 CGTAGTTGAGCTTGGTT----TCACCTTCCCACATGTCAAACTGAAGCACCCCTTGGGAC 110899 | || |||||||| | || |||| ||| |||| |||| | | || || || Sbjct 34471 CCCAG---AGCTTGGTGGGTGTGACATTCC-ACAAGTCATACTGCAAAAGTCCCTGAGAG 34416 Query 110900 GCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCGCC 110959 || || || ||||| |||| || | ||| | ||| |||| ||||| || Sbjct 34415 GCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACACGAGGCT 34356 Query 110960 TCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTCATCT 111019 || || | |||| || ||||| |||||||| | |||| ||||||||| || Sbjct 34355 TCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGCCTCGGGC 34296 Query 111020 GAATCAAATGCGTAGCGGCA---CAAAATAAATACATCCGCGAGACCTTGAACACCCAAA 111076 || || |||| | ||| | | || || |||| ||||||||||| ||||| | | Sbjct 34295 GAGTCGAATG-GCAGCTTAAGTGCCAAG--AAGGCATCGGCGAGACCTTGCACACCAAGA 34239 Query 111077 CCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACG---GGATAAAAATTT 111133 || || |||| ||| ||| | || || ||| ||| |||| | || || | || Sbjct 34238 CCGATGGGTCGGTGACGCTTGTTGGAA---CGCTCAGCTTCAATGACTGGGTAGTAGTTG 34182 Query 111134 CTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCA 111193 ||| |||| ||| | || | ||||| ||| | || || || || || | Sbjct 34181 ACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTCTTG 34122 Query 111194 TAATCAAAAGTGCGAGTCTCTTCAT---TGAC-AT--ACTTTGGAAGGGCGATTGATGCC 111247 | || | | | || ||| | || | || | | || | ||| || || || Sbjct 34121 AAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGAGGCG 34062 Query 111248 AAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACATAAGTTG 111307 | |||||| |||||| |||||| | | |||||| | ||| || ||||| |||||| Sbjct 34061 AGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAGTTG 34002 Query 111308 GAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCATCCTTGTAG 111367 | ||| || || || | ||||| ||||| ||| |||||| || |||||||| Sbjct 34001 CTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTGTAC 33942 Query 111368 AGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA-CATCGGC 111426 |||||| |||| | |||||||| || || | | ||||||||| | ||| | | || | Sbjct 33941 AGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTCTGT 33882 Query 111427 GGCTGGTACAATGGCGTTG--GCCCGTCCCT-CCGCCTCGTACTTTGTGTAGAGGGCTTC 111483 | || | |||| || | || | || || ||||||||| ||||| | |||||| Sbjct 33881 GCCTTG----ATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTGTACAAGGCTTC 33826 Query 111484 AAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGACCA 111543 ||| || || || | | ||| | ||| || | || || || | || ||||| Sbjct 33825 AAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACCA 33766 Query 111544 TTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAGAG 111603 | ||| ||||| || ||||||||||| || || || ||||| || | | || | Sbjct 33765 CTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACAA 33706 Query 111604 ATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATGA 111662 || | | | | || ||||||| | || ||||| || || |||||||| | | || Sbjct 33705 GTCGCGTGCGCGGA-CCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGA 33647 Query 111663 TATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGACGC------CCAG 111716 | || |||||||||||||||| || | || | | || | ||||| ||| Sbjct 33646 TGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGGCACC---TGGACGCTTGTTGCCAC 33590 Query 111717 CTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTG 111776 |||| | ||||| | || ||| ||| || || || ||||| || || || || | | Sbjct 33589 CTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530 Query 111777 ATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT--CAC--AT-CA-TGGATGT 111830 || ||||||||| || ||| | | || || | ||| || || |||| | Sbjct 33529 ATGTACCATTTGTACCGGCAATG------TAACTGCCTGTTGCACGGATGCAGTGGACAT 33476 Query 111831 GCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 | ||||| || || || ||| ||||| |||||| | || || | |||| Sbjct 33475 TGAGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGA 33416 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 | || | ||| ||||| ||||| | | || |||||||||| || | || || | | Sbjct 33415 TGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGG 33356 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG--GACATCTT 112008 | ||||| || ||||||||||| || | |||||| ||| | ||||| ||||| Sbjct 33355 GCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAG 33298 Query 112009 GTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCAT 112068 || ||||||||| | | | |||||||| || || || ||||| | ||||| ||||| Sbjct 33297 GTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCAT 33238 Query 112069 GAACATGTACTGTGG 112083 || ||||| ||| || Sbjct 33237 GATCATGTGCTGCGG 33223 >seq23 Length=690853 Score = 129 bits (142), Expect = 7e-25 Identities = 378/575 (66%), Gaps = 12/575 (2%) Strand=Plus/Minus Query 122371 TAGTCCCCGACCCGCTTCTCAAAGAAGTTGGTCTTCCCATCAAGGCTAATGTTTTCCATA 122430 ||||| ||||| ||||||||||||||||||||||| ||| | || |||||| |||||| Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169 Query 122431 AAGTCAAATGGATTCTTCGCGT--TCCAAATGGGTGGCACCCCAACTTGTTTGAGGAGAC 122488 |||||||||||||| | | || | || | || |||| |||||| | Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTG--TTGCCAAGAGAGACGAGGAGTC 89111 Query 122489 GATCCGACACATACTCAATGTACTCGGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 122548 |||| | ||| | |||||||||||| ||| || | || ||||| | | | | Sbjct 89110 GATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGGC 89051 Query 122549 ATGGGAGTGCGTCCAAGATGAACCCTTTCTCAATCTCAACCGCCTCTTTCACGATGGCGT 122608 |||| || | ||| || ||| | | |||||||||||| || || | | |||| | | Sbjct 89050 ATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCTT 88991 Query 122609 GGATAGTTTCGGTAGTGGGTCTATTACGCAA-AGTCTTGAAGAGCTCCACGGCAAACTCC 122667 | | || | | || | || ||| | || | || || ||| || || Sbjct 88990 GTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAATCT 88932 Query 122668 TGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGA 122727 |||||||||||| || || || || || ||||| ||| || || ||||||||| Sbjct 88931 GTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGA 88872 Query 122728 CCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACA 122787 || |||||||| | |||| | || | | ||| || || ||||| ||||| ||||| ||| Sbjct 88871 CCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACA 88812 Query 122788 CACGCAAACGCAAAAAGGCGTTCGGCGAAGGAGCGAGACT--TTG-CATCAAACCATTTC 122844 ||||| || | ||| || || |||| ||||| | | | ||| ||| | Sbjct 88811 GCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCCAGCGC 88755 Query 122845 ATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGC 122904 | |||||| | || || | || || || || | || | ||| || || || | ||| Sbjct 88754 AGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGC 88695 Query 122905 TTCTTTTCAGATCCATCCTTAATGTATTTGTCAAT 122939 | | || || | ||||| |||||| | ||||| Sbjct 88694 TGCCGTTGAGCTTGTTCCTTGATGTATGTATCAAT 88660 >seq2 Length=565986 Score = 114 bits (126), Expect = 2e-20 Identities = 292/438 (67%), Gaps = 11/438 (3%) Strand=Plus/Minus Query 11537 TCAAAGCCATCCATCTCGGTGAGTAATTGATTAATTGTTTGTTCTCTCTCATCATTTGCT 11596 || || ||||||||||| ||| | || || | |||| ||| | ||||| || ||| Sbjct 335669 TCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-GCT 335611 Query 11597 GGCATA----CCACCAGCACTGCGTTGCTTGCCCACCGCATCAATCTCATCAATGAAGAC 11652 | || | |||||| || || ||| || | || ||||| ||||| | ||||| Sbjct 335610 GCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAGAC 335551 Query 11653 AATACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCACCCAC 11712 || || ||| ||| | ||| || | |||| | ||||| || | | |||||| Sbjct 335550 GATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCCAC 335491 Query 11713 ACCAACAAACATCTCCACAAAGTTTGCGGCAGAG-CACTGGATGAATGGGACATTTGATT 11771 ||| |||||||| ||||| || | || || | | ||| | ||| || || || || Sbjct 335490 ACCGACAAACATTTCCACGAACTCTGAACCACTGACGCTGAA-GAAAGGTACGCCTGCTT 335432 Query 11772 CACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCCGTACCTGGCTTACCCGCGAGAAGGG 11831 |||| || | ||| || || || |||||||| ||||||||| ||| | |||| || Sbjct 335431 CACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAATGG 335372 Query 11832 CGCCTCGGGGGATCTTGGCACCA--CTTCCAAAATATCTCTCGGGTTGCTTGAGAAAATC 11889 | ||||| ||||||||||| ||| |||| ||| || | || | |||||| || | Sbjct 335371 CACCTCGAGGGATCTTGGCGCCAAGCTTC--TCATAGATCCCAGGCTCCTTGAGGAACTT 335314 Query 11890 CACAATCTCTTCAAGTTCATCTTTGGCCGCGTCAATCCCCTCAACATCACTGAAGCGGGT 11949 |||| || || || ||||| || | || || ||||||| |||| ||| Sbjct 335313 GACAAATTCCATAATCTCCTCTTTCGCTTCATCTGCACCAGCAACATCCTTGAACTTGGT 335254 Query 11950 TTTAATCTCCTGTTCAGC 11967 ||| || ||| |||||| Sbjct 335253 TTTGATGTCCGTTTCAGC 335236 >seq11 Length=330268 Score = 105 bits (116), Expect = 8e-18 Identities = 174/246 (71%), Gaps = 4/246 (2%) Strand=Plus/Plus Query 181802 AGCGTCTTTACCACCCATGAGACGCGTACCAAATTGACCACATGGC-TCAAGAAGGTTAA 181860 ||| |||||||||||| | |||| ||||| ||||||||| ||| |||||| || | Sbjct 286215 AGCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAGACA-TTGA 286273 Query 181861 TGTTGTTTGAACCTGTATAGTCGTTGGCCAACTTAACGATGGTATCCGCAAGGGACACTT 181920 ||||||||| || | || | ||||| || ||||| | |||||||| |||| Sbjct 286274 TGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTT 286333 Query 181921 CACCGTGGTGGTAAGCTGACTTGTCCGCAACATATGCCGC-CAACTGTGCCACCTTCATT 181979 ||||||| ||||| || | | || |||| || ||| | | ||| || ||||| ||| Sbjct 286334 CACCGTGATGGTAGGCAGTGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGATT 286392 Query 181980 TCATCTTTGAGGTTCTTGTGGAAGCAAGCATACATCACTTTCCTCTGCGAAGGCTTGAGA 182039 || | ||||| || | |||||||||| ||| | ||| | ||| ||||||| | Sbjct 286393 TCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGAAA 286452 Query 182040 CCATCC 182045 |||||| Sbjct 286453 CCATCC 286458 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031654582400