Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq43 295 8e-75 seq11 141 1e-28 seq23 138 1e-27 seq2 84.2 3e-11 >seq43 Length=605699 Score = 295 bits (326), Expect = 8e-75 Identities = 1146/1776 (65%), Gaps = 55/1776 (3%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| |||| |||||| |||| | ||||| || | Sbjct 34952 CGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTA 34893 Query 117897 AACTTGGAGAGGGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 117954 | || || || || ||| ||| | ||| | ||| || ||||| || | Sbjct 34892 ATTTTACCGAATGTCGGCGCCTTGAGATGCAA--GTTGAGGGATTGCGACTGATCAATAA 34835 Query 117955 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014 || || || || || |||||||| ||||| | || || ||||| |||||| Sbjct 34834 AGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATACAGTCT 34775 Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074 |||||||| || | || | ||||| | ||| ||||| | || ||||| | Sbjct 34774 TGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGG 34715 Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134 | ||| ||| |||||||| || ||||||||| || |||| |||||||| || Sbjct 34714 CAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTT---GA 34658 Query 118135 GATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191 | | | || || || |||||||| || ||| || | | || || ||| Sbjct 34657 GCAACCAAGGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGC 34598 Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251 ||||||| ||||||||||| |||||| ||||| || || | ||||| || ||||||| Sbjct 34597 TCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCA 34538 Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGC 118309 | ||||| | ||| ||| |||| ||| | ||| | ||| | || ||||| | Sbjct 34537 TCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGC--AATCTGCTCTTTGAGCGT 34480 Query 118310 GTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACC 118366 ||||||| || ||||| || | | ||||| ||| |||| | | || Sbjct 34479 CGCCCAGTCCCAG---AGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCC 34423 Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426 || || || || || ||||| | || ||||| ||||| | | |||| || | Sbjct 34422 CTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACA 34363 Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGC 118486 || || || || |||| || || || ||||| || | |||| ||||||| Sbjct 34362 CGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGC 34303 Query 118487 CTCGTCGGAATCAAACGCGAG--TCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544 |||| || || || | || | | | || || |||| ||||||||||| ||| Sbjct 34302 CTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAG--AAGGCATCGGCGAGACCTTGCACA 34245 Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAA 118604 || || || || || || || | | | || || | ||| || || || | Sbjct 34244 CCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATGACTGGGTAGTAG 34185 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || ||||| | | | || | || | |||||||| | || || || ||||| Sbjct 34184 TTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTC 34125 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCAT---TGAC-AT--ACTTAGGAAGGGCGATTGAC 118718 | | | || | | | || ||| | || | || | | || | ||| || || Sbjct 34124 TTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGAG 34065 Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778 || ||||| || |||| |||||| | | |||||| | ||| || || |||||| Sbjct 34064 GCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAG 34005 Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838 || | ||| ||||| || | |||||| || || ||||| ||| || || |||||| Sbjct 34004 TTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTG 33945 Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897 || |||||| | || | |||||||| ||||| | || ||||||||| | ||| | | || Sbjct 33944 TACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTC 33885 Query 118898 GGCAGCTGGCACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956 | || | | || || | | ||| |||| |||||||| ||||| | ||||| Sbjct 33884 TGTGCCTTG-ATGGTCTTCATGACCTTGCCGGCCTTC-TCGTACTTGGTGTACAAGGCTT 33827 Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016 |||| || || || |||| | || || | | ||||| | ||| |||| Sbjct 33826 CAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACC 33767 Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076 | | ||| |||||| || |||||||||||||| || ||||||||||| || |||| | Sbjct 33766 ACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACA 33707 Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 || || ||| | ||||| | || || || ||||| || | ||| | | || Sbjct 33706 AGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGA 33647 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAG 119190 | || |||||||| || || | ||| | || | | | ||| |||| ||| Sbjct 33646 TGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGG-CACCTG--GACGCTTGTTGCCAC 33590 Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250 | |||| |||||||| |||||| ||| || ||||| ||||| || ||||| || | || Sbjct 33589 CTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530 Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCGTGGATGTGCAT 119308 || |||||||| || ||| | ||| || || | || ||||| | | Sbjct 33529 ATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTTGCACGGATGCAGTGGACATTGAG 33472 Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368 |||||| || || || ||| ||||| || ||| |||| || ||||||| || Sbjct 33471 ACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCC 33412 Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428 ||||||||||||| |||| ||| || |||||||| ||| | ||| || |||| || Sbjct 33411 ATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGT 33352 Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTTGTCG 119486 ||| ||||||||||| || || | ||||| ||| | ||||| ||||| || | Sbjct 33351 ACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAGGTTG 33294 Query 119487 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 119546 || ||||| | | | |||||| || || ||||| || | | ||| ||||| | | Sbjct 33293 TATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATC 33234 Query 119547 ATGTATTGGGGTGTTTC--CATCAGGATACCATCGA 119580 |||| || ||| | || || ||| |||||||| Sbjct 33233 ATGTGCTGCGGTCTCTCTGCAACAG--CACCATCGA 33200 >seq11 Length=330268 Score = 141 bits (156), Expect = 1e-28 Identities = 212/296 (72%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 179766 ATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAG 179825 ||||| |||||| || || ||||| || || |||| ||| ||| ||||||||||| || Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976 Query 179826 CCGACCATAGCG-AAG-CTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAG 179883 |||| || || ||| || || | || || || | || || || || | ||| | Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034 Query 179884 ATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGG 179943 ||| |||||| || | || || || | ||| ||| || ||| |||||||| Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094 Query 179944 ACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAG 180003 ||||| |||| ||||| | ||||||||||| ||||||| || ||||| ||||| Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154 Query 180004 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 180059 | ||||||| ||||| ||||| |||||||| || ||||||| |||||| ||||| Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210 Score = 100 bits (110), Expect = 4e-16 Identities = 293/436 (67%), Gaps = 18/436 (4%) Strand=Plus/Plus Query 178846 ATGTCCTTGGGATTGAACGGTGGCACGTAGCAACTGA--AACCCGTGCCGATGCCTTCGG 178903 ||||||||||||||||| ||| | || | || | || || || || || || Sbjct 286000 ATGTCCTTGGGATTGAAATTTGGAATGT--CTGTGGACCAGCCAGTACCAATACCCGAGG 286057 Query 178904 TTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAGTCTGGTTCAATCGCACGCC 178963 | ||||| || || | ||| || ||| |||| ||| | ||||| || | | | | Sbjct 286058 TACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCATTCTGGCTCTACCATGAGAC 286117 Query 178964 CGTCATCATCCAAATAATTGAGCACGGGGTCGTC--CCTCGGATCAAAGAT--TTTACGA 179019 ||||||| || |||||||||| || || | ||| | |||||| ||| | Sbjct 286118 CGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCGCA--AAAGATCTTTTTTGT 286175 Query 179020 GCATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATG 179079 | || | | ||| | || |||||||| | || | |||||||| |||||| | Sbjct 286176 G-ATGCGAGCCAAGTCT-GTAAAGATGTAACGCGCGCTGGCAGCATCTTTACCACCCTGG 286233 Query 179080 AGACGCGTCCCAAATTGACCACATGGC-TCAAGGAGATTGATATTGTTTGAACCCATGTA 179138 |||| || || ||||||||| ||| ||||| | |||||| ||||||| |||| | Sbjct 286234 TGACGTGTACCGAATTGACCATTGGGCATCAAG-ACATTGATGTTGTTTGCGCCCACAAA 286292 Query 179139 GTCATTG-GCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCG 179197 | |||| ||||| |||||| || | || ||||||||||||||||||||||| || | Sbjct 286293 GG-ATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTTCACCGTGATGGTAGGCAG 286351 Query 179198 ACTTGTCCGCCACATATGCCGC-CAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTG 179256 | || | || || ||| | | ||| || ||||| || || ||||||| || Sbjct 286352 TGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGATTTCCGCCTTGAGCTTGCGC 286410 Query 179257 TGGAAGCACGCATACA 179272 | |||||| ||| ||| Sbjct 286411 TTGAAGCAAGCAAACA 286426 >seq23 Length=690853 Score = 138 bits (152), Expect = 1e-27 Identities = 382/578 (66%), Gaps = 12/578 (2%) Strand=Plus/Minus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 ||||| || || |||||||| |||||||| ||||| || | | || ||||||||| Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169 Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || |||||||| || | | || | || || || | ||| |||||| | Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGC--CAAGAGAGACGAGGAGTC 89111 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 |||| | ||| | ||||||||||| ||| || | || ||||| | | | | Sbjct 89110 GATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGGC 89051 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 |||| || | ||| || ||| ||| |||||| || |||||||| | |||| | | Sbjct 89050 ATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCTT 88991 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAA-GTCTTGAAGAGTTCCACGGCAAACTCC 130024 | | | | | ||| | || ||| | || | || || ||| || || Sbjct 88990 GTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAATCT 88932 Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084 |||||||||||||||||| |||||||| ||||| ||| || || ||||||||| Sbjct 88931 GTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGA 88872 Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 || |||||||| | ||| || || | || ||||||||||| ||||| ||||| ||| Sbjct 88871 CCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACA 88812 Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTAT-CAAACCACTTC 130201 || || || | |||||| ||||||| |||| | || | ||| ||| | Sbjct 88811 GCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCCAGCGC 88755 Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261 | ||||| | || |||| || ||| ||||||| |||| ||| || || ||||| | | Sbjct 88754 AGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGC 88695 Query 130262 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299 | | || | | | || |||||||| |||| ||||| Sbjct 88694 TGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAG 88657 >seq2 Length=565986 Score = 84.2 bits (92), Expect = 3e-11 Identities = 218/330 (66%), Gaps = 17/330 (5%) Strand=Plus/Minus Query 14148 TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 14207 |||| || ||||||||||| | || || |||| ||| ||| |||||||| || | Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613 Query 14208 CAGGCATA----CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 14263 | | || | ||||| || || ||| || | |||||||||||||||| || Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553 Query 14264 ACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 14323 ||||| || ||| ||| | || ||| |||| | || ||||||| | ||| Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493 Query 14324 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACG 14377 ||||| |||||||| ||||| || | | ||| || || || ||| || ||| Sbjct 335492 ACACCGACAAACATTTCCACGAACT------CTGAACCACTGACGCTGAAGAAAGGTACG 335439 Query 14378 TTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCG 14437 | |||||| || | ||| || || || ||||| || || ||||| || | Sbjct 335438 CCTGCTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAA 335379 Query 14438 AGAAGGGCACCACGTGGGATCCTGGCACCA 14467 |||| |||||| || |||||| |||| ||| Sbjct 335378 AGAATGGCACCTCGAGGGATCTTGGCGCCA 335349 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618434859860640