Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_028092.1
Length=193301
Score E
Sequences producing significant alignments: (Bits) Value
seq43 295 8e-75
seq11 141 1e-28
seq23 138 1e-27
seq2 84.2 3e-11
>seq43
Length=605699
Score = 295 bits (326), Expect = 8e-75
Identities = 1146/1776 (65%), Gaps = 55/1776 (3%)
Strand=Plus/Minus
Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896
|| ||||||||||| ||||||||||| |||| |||||| |||| | ||||| || |
Sbjct 34952 CGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGATGTA 34893
Query 117897 AACTTGGAGAGGGTTGGA--CTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGA 117954
| || || || || ||| ||| | ||| | ||| || ||||| || |
Sbjct 34892 ATTTTACCGAATGTCGGCGCCTTGAGATGCAA--GTTGAGGGATTGCGACTGATCAATAA 34835
Query 117955 AGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTCC 118014
|| || || || || |||||||| ||||| | || || ||||| ||||||
Sbjct 34834 AGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATACAGTCT 34775
Query 118015 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCT 118074
|||||||| || | || | ||||| | ||| ||||| | || ||||| |
Sbjct 34774 TGTAGAGGGCTTTCGTCTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCACCATCGG 34715
Query 118075 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 118134
| ||| ||| |||||||| || ||||||||| || |||| |||||||| ||
Sbjct 34714 CAATGATGCGATTCTTCATATTCTCTGACCAGAGTCCCATCTCAACGAGATCCTT---GA 34658
Query 118135 GATGCTTA---TTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGG 118191
| | | || || || |||||||| || ||| || | | || || |||
Sbjct 34657 GCAACCAAGGGTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAGTAAATGTTGC 34598
Query 118192 TCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCA 118251
||||||| ||||||||||| |||||| ||||| || || | ||||| || |||||||
Sbjct 34597 TCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGACGCAGTGGGCA 34538
Query 118252 TGGGTGCCATGAGAAGGCTGTTACGGAGACCCT--TTTCCCTAATGCGTTCCTTGAGAGC 118309
| ||||| | ||| ||| |||| ||| | ||| | ||| | || ||||| |
Sbjct 34537 TCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGC--AATCTGCTCTTTGAGCGT 34480
Query 118310 GTCCCAGTCGTAGTTGAGCTTTGTCTCCC---CCTGCCACATATCAAACTGGAGGATACC 118366
||||||| || ||||| || | | ||||| ||| |||| | | ||
Sbjct 34479 CGCCCAGTCCCAG---AGCTTGGTGGGTGTGACATTCCACAAGTCATACTGCAAAAGTCC 34423
Query 118367 TTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGA 118426
|| || || || || ||||| | || ||||| ||||| | | |||| || |
Sbjct 34422 CTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCTTCTTGTGCCAGCTCACA 34363
Query 118427 GCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGC 118486
|| || || || |||| || || || ||||| || | |||| |||||||
Sbjct 34362 CGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGTTCAGCTCCTTGGC 34303
Query 118487 CTCGTCGGAATCAAACGCGAG--TCGGCACAAAATAAATACATCCGCGAGACCTTGGACA 118544
|||| || || || | || | | | || || |||| ||||||||||| |||
Sbjct 34302 CTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAG--AAGGCATCGGCGAGACCTTGCACA 34245
Query 118545 CCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATAAAAA 118604
|| || || || || || || | | | || || | ||| || || || |
Sbjct 34244 CCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATGACTGGGTAGTAG 34185
Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664
|| ||||| | | | || | || | |||||||| | || || || |||||
Sbjct 34184 TTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACATCGTGGAGCTTC 34125
Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCAT---TGAC-AT--ACTTAGGAAGGGCGATTGAC 118718
| | | || | | | || ||| | || | || | | || | ||| || ||
Sbjct 34124 TTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGCAAGGCAATGGAG 34065
Query 118719 GCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAG 118778
|| ||||| || |||| |||||| | | |||||| | ||| || || ||||||
Sbjct 34064 GCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATCTCGGTACACAAG 34005
Query 118779 TTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTG 118838
|| | ||| ||||| || | |||||| || || ||||| ||| || || ||||||
Sbjct 34004 TTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTGCAGGCGTCCTTG 33945
Query 118839 TAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGA-CATC 118897
|| |||||| | || | |||||||| ||||| | || ||||||||| | ||| | | ||
Sbjct 33944 TACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCGTACCACAGCTTC 33885
Query 118898 GGCAGCTGGCACAGTGGCGTTGGC-TCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTT 118956
| || | | || || | | ||| |||| |||||||| ||||| | |||||
Sbjct 33884 TGTGCCTTG-ATGGTCTTCATGACCTTGCCGGCCTTC-TCGTACTTGGTGTACAAGGCTT 33827
Query 118957 CAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACC 119016
|||| || || || |||| | || || | | ||||| | ||| ||||
Sbjct 33826 CAAATTCATCGCCATACACCTCGTGCATACCAGGACATTCGTTGGGGCACATGAGCGACC 33767
Query 119017 ATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGAGAAGA 119076
| | ||| |||||| || |||||||||||||| || ||||||||||| || |||| |
Sbjct 33766 ACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAGAGCATAGAACA 33707
Query 119077 GATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136
|| || ||| | ||||| | || || || ||||| || | ||| | | ||
Sbjct 33706 AGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAGGAAGCCAAAGA 33647
Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGACGA------CCAG 119190
| || |||||||| || || | ||| | || | | | ||| |||| |||
Sbjct 33646 TGTCTGCGTGCCATGGCTCAATGTAAATAGCAAAGG-CACCTG--GACGCTTGTTGCCAC 33590
Query 119191 CCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGG 119250
| |||| |||||||| |||||| ||| || ||||| ||||| || ||||| || | ||
Sbjct 33589 CTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGATGATGCCGTTGG 33530
Query 119251 ATTGGCCATTTGTCCCCCGAATACGAGACTTATTG--GCTCTGACATCGTGGATGTGCAT 119308
|| |||||||| || ||| | ||| || || | || ||||| | |
Sbjct 33529 ATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTTGCACGGATGCAGTGGACATTGAG 33472
Query 119309 ACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCC 119368
|||||| || || || ||| ||||| || ||| |||| || ||||||| ||
Sbjct 33471 ACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTGTGTCGTAGATGCC 33412
Query 119369 ATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGT 119428
||||||||||||| |||| ||| || |||||||| ||| | ||| || |||| ||
Sbjct 33411 ATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGACGAGAGTTGTGGGTTGGGCGT 33352
Query 119429 ACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGG--GACATCTTGTCG 119486
||| ||||||||||| || || | ||||| ||| | ||||| ||||| || |
Sbjct 33351 ACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGA--AGTGCTTGGAAGACATGAGGTTG 33294
Query 119487 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 119546
|| ||||| | | | |||||| || || ||||| || | | ||| ||||| | |
Sbjct 33293 TATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAGCGACACGCATGATC 33234
Query 119547 ATGTATTGGGGTGTTTC--CATCAGGATACCATCGA 119580
|||| || ||| | || || ||| ||||||||
Sbjct 33233 ATGTGCTGCGGTCTCTCTGCAACAG--CACCATCGA 33200
>seq11
Length=330268
Score = 141 bits (156), Expect = 1e-28
Identities = 212/296 (72%), Gaps = 4/296 (1%)
Strand=Plus/Plus
Query 179766 ATTGAGGATGAGACCCTTAATGTGTGAACCATCGTTATCCGCATCCGTCATAATCATAAG 179825
||||| |||||| || || ||||| || || |||| ||| ||| ||||||||||| ||
Sbjct 286917 ATTGATGATGAGTCCTTTGATGTGCGAGCCGTCGTGATCTTGATCAGTCATAATCATGAG 286976
Query 179826 CCGACCATAGCG-AAG-CTCGGAAACATCTTGATAATCCTTACCTTGTTGAAGACCCAAG 179883
|||| || || ||| || || | || || || | || || || || | ||| |
Sbjct 286977 ATGACCGTATCGCAAGTCTTTGACGC-TCGTG-TACTTTTTCCCATGCTGCAAACCGAGA 287034
Query 179884 ATCTTCTTGAGATCATTGAACTCTTGGTTTGATGTGAGTTGCGCCACTGAAGCATCTCGG 179943
||| |||||| || | || || || | ||| ||| || ||| ||||||||
Sbjct 287035 ATCGTCTTGATATTTTGGATTTCGACATTGGCACTGATTTGAGCAGCTGCTGCATCTCGC 287094
Query 179944 ACATTTTTACACTTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAG 180003
||||| |||| ||||| | ||||||||||| ||||||| || ||||| |||||
Sbjct 287095 ACATTGAGCAACTTTCCACGCAAGGGGAACACACCAAAGTGATCTCGTCCAACAACAGAC 287154
Query 180004 AGACCAGCAACTGCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACA 180059
| ||||||| ||||| ||||| |||||||| || ||||||| |||||| |||||
Sbjct 287155 ATGCCAGCAATGGCGAGCGTCTTGGCGGAATCTCCTTCCGTCAGGATGAGTGTACA 287210
Score = 100 bits (110), Expect = 4e-16
Identities = 293/436 (67%), Gaps = 18/436 (4%)
Strand=Plus/Plus
Query 178846 ATGTCCTTGGGATTGAACGGTGGCACGTAGCAACTGA--AACCCGTGCCGATGCCTTCGG 178903
||||||||||||||||| ||| | || | || | || || || || || ||
Sbjct 286000 ATGTCCTTGGGATTGAAATTTGGAATGT--CTGTGGACCAGCCAGTACCAATACCCGAGG 286057
Query 178904 TTCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAGTCTGGTTCAATCGCACGCC 178963
| ||||| || || | ||| || ||| |||| ||| | ||||| || | | | |
Sbjct 286058 TACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCATTCTGGCTCTACCATGAGAC 286117
Query 178964 CGTCATCATCCAAATAATTGAGCACGGGGTCGTC--CCTCGGATCAAAGAT--TTTACGA 179019
||||||| || |||||||||| || || | ||| | |||||| ||| |
Sbjct 286118 CGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCGCA--AAAGATCTTTTTTGT 286175
Query 179020 GCATCCCTGGTGAGTTTTGTGAAGATGTACCTCGTTTGAGACGCATCTTTGCCACCCATG 179079
| || | | ||| | || |||||||| | || | |||||||| |||||| |
Sbjct 286176 G-ATGCGAGCCAAGTCT-GTAAAGATGTAACGCGCGCTGGCAGCATCTTTACCACCCTGG 286233
Query 179080 AGACGCGTCCCAAATTGACCACATGGC-TCAAGGAGATTGATATTGTTTGAACCCATGTA 179138
|||| || || ||||||||| ||| ||||| | |||||| ||||||| |||| |
Sbjct 286234 TGACGTGTACCGAATTGACCATTGGGCATCAAG-ACATTGATGTTGTTTGCGCCCACAAA 286292
Query 179139 GTCATTG-GCCAACTTGACAATCGTATCCGCGAGGGAGACTTCACCGTGATGGTAAGCCG 179197
| |||| ||||| |||||| || | || ||||||||||||||||||||||| || |
Sbjct 286293 GG-ATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGACTTCACCGTGATGGTAGGCAG 286351
Query 179198 ACTTGTCCGCCACATATGCCGC-CAACTGCGCCACCTTCATCTCATCCTTGAGGTTCTTG 179256
| || | || || ||| | | ||| || ||||| || || ||||||| ||
Sbjct 286352 TGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGATTTCCGCCTTGAGCTTGCGC 286410
Query 179257 TGGAAGCACGCATACA 179272
| |||||| ||| |||
Sbjct 286411 TTGAAGCAAGCAAACA 286426
>seq23
Length=690853
Score = 138 bits (152), Expect = 1e-27
Identities = 382/578 (66%), Gaps = 12/578 (2%)
Strand=Plus/Minus
Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787
||||| || || |||||||| |||||||| ||||| || | | || |||||||||
Sbjct 89228 TAGTCACCGACACGCTTCTCAAAGAAGTTGGTCTTGCCAGCGAGTGAAATGTTCTCCATA 89169
Query 129788 AAATCAAATGGGTTCTTTGAGT--TCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845
|| |||||||| || | | || | || || || | ||| |||||| |
Sbjct 89168 AAGTCAAATGGATTGCTGGTGTGATAGAACTTTTTGTTGC--CAAGAGAGACGAGGAGTC 89111
Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905
|||| | ||| | ||||||||||| ||| || | || ||||| | | | |
Sbjct 89110 GATCAGCGACAAATTCAATGTACTCGCGCATGAGCTTTGCATTGATACCCAATAAGGGGC 89051
Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965
|||| || | ||| || ||| ||| |||||| || |||||||| | |||| | |
Sbjct 89050 ATGGTAGGGAGTCTGTGAGGAAAGCCTGCTCAATCTCAACAGCTTCAGTAATGATGTCTT 88991
Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAA-GTCTTGAAGAGTTCCACGGCAAACTCC 130024
| | | | | ||| | || ||| | || | || || ||| || ||
Sbjct 88990 GTACCTGTTGCTTTGAAGGCTTGTTCTTCAAGTGACTAAACAAGAGACA-GGCGAAATCT 88932
Query 130025 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 130084
|||||||||||||||||| |||||||| ||||| ||| || || |||||||||
Sbjct 88931 GTGTGGAGACCCTCGTCACGAGAGATGAGCTCATTGCTAAAGGTGAGTCCCGGCATGAGA 88872
Query 130085 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144
|| |||||||| | ||| || || | || ||||||||||| ||||| ||||| |||
Sbjct 88871 CCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAAAAGATTCCCTCGACA 88812
Query 130145 CACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGGGACT--TTGTAT-CAAACCACTTC 130201
|| || || | |||||| ||||||| |||| | || | ||| ||| |
Sbjct 88811 GCAGCAAAAGCCACAAGACGCAGTGCAAAGG---TAGACTCGTCGTCTGCAATCCAGCGC 88755
Query 130202 ATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCC 130261
| ||||| | || |||| || ||| ||||||| |||| ||| || || ||||| | |
Sbjct 88754 AGTGCCCAGTCTGCTTTTTGCTTGATGCACGGGATTGTCTCGATTGCATCGAAGAGGTGC 88695
Query 130262 TTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 130299
| | || | | | || |||||||| |||| |||||
Sbjct 88694 TGCCGTTGAGCTTGTTCCTTGATGTATGTATCAATGAG 88657
>seq2
Length=565986
Score = 84.2 bits (92), Expect = 3e-11
Identities = 218/330 (66%), Gaps = 17/330 (5%)
Strand=Plus/Minus
Query 14148 TATCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCG 14207
|||| || ||||||||||| | || || |||| ||| ||| |||||||| || |
Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613
Query 14208 CAGGCATA----CCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAA 14263
| | || | ||||| || || ||| || | |||||||||||||||| ||
Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553
Query 14264 ACGATACATGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCG 14323
||||| || ||| ||| | || ||| |||| | || ||||||| | |||
Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493
Query 14324 ACACCCACAAACATCTCCACAAAATTGGCGGCGGAA-CATTG-----GATGAAGGGGACG 14377
||||| |||||||| ||||| || | | ||| || || || ||| || |||
Sbjct 335492 ACACCGACAAACATTTCCACGAACT------CTGAACCACTGACGCTGAAGAAAGGTACG 335439
Query 14378 TTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGTTTCCCTGCG 14437
| |||||| || | ||| || || || ||||| || || ||||| || |
Sbjct 335438 CCTGCTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAA 335379
Query 14438 AGAAGGGCACCACGTGGGATCCTGGCACCA 14467
|||| |||||| || |||||| |||| |||
Sbjct 335378 AGAATGGCACCTCGAGGGATCTTGGCGCCA 335349
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 618434859860640
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