Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_028093.1
Length=182309
Score E
Sequences producing significant alignments: (Bits) Value
seq43 262 5e-65
seq23 136 5e-27
seq2 111 2e-19
seq11 102 1e-16
>seq43
Length=605699
Score = 262 bits (290), Expect = 5e-65
Identities = 980/1515 (65%), Gaps = 65/1515 (4%)
Strand=Plus/Plus
Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281
|| ||| ||||| ||||||| || || | || |||||||| || |||||||| | |
Sbjct 33223 CCGCAGCACATGATCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAGGCC 33282
Query 104282 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339
| ||||||||| || ||||| ||||| | ||| |||||| | || |||||||
Sbjct 33283 ATTGAGACATACAACCTCATGTCTTCCAAGCACT--TCACACACGCATCGCCTACCCTCT 33340
Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399
|||| || ||||| || | || ||| | || |||||||||| || | | ||||| |
Sbjct 33341 TCAACGCCGGTACGCCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATG 33400
Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459
|||| ||| | || ||||| | || || | |||||| ||||| ||| || |
Sbjct 33401 ACTCGATCGATGGCATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCG 33460
Query 104460 GGGGTATTGGGATGCACATCCA-TG-AT--GTG--AGAGCCAATAAATCTCGTATTCGGG 104513
| || ||||| | | |||| || || ||| | || || | | ||| |
Sbjct 33461 GTGGCATTGGTCTCAATGTCCACTGCATCCGTGCAACAGGCAGTTAC------ATTGCCG 33514
Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573
| ||||||||| ||| | || || || || ||||| || || || ||| ||| ||
Sbjct 33515 GTACAAATGGTACATCCAACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCA 33574
Query 104574 GCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGC 104627
| ||||| | |||| ||| ||||| | || | | || | || ||||||
Sbjct 33575 GGTATGTCGACCAAGGTGGCAACAAGCGTCCA---GGTGCCTTTGCTATTTACATTGAGC 33631
Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687
|||||||||| || ||| | | |||||||| ||||| ||||| || | || ||||
Sbjct 33632 CATGGCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGG 33691
Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747
|| ||||| | |||| ||||||||||| || ||||||||||||||| | || |
Sbjct 33692 TCCGCGCACGCGACTTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGG 33751
Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807
|||||| |||| | ||||| ||| | || || || | |||||| | ||| |
Sbjct 33752 AGGAGAATGGCGAGTGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGT 33811
Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGA 104867
|| || || ||||||||| | ||||| ||||||||| | | || || | ||
Sbjct 33812 ATGGCGATGAATTTGAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAGA 33871
Query 104868 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926
| | | || | || | ||||| | ||||||||| || | ||||| ||||| || |
Sbjct 33872 CCAT-CAAGGCACAGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAAT 33930
Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986
|| | |||||| ||||| |||||||| |||| ||| || || ||||| | |||
Sbjct 33931 CCCTTCATGCTGTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACC 33990
Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046
|||||| | ||| | ||||| || || | || | | | |||||| ||||
Sbjct 33991 ATCAAGTGCAGCAACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGCT 34050
Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT------ATGTGGATCCAGAGACAAAG 105100
|| || || ||||| || || || | |||| | | || |||| |||
Sbjct 34051 GTCTGCAATCTCGCCTCCATTGCCTTGCCCACCTTCATCGACATGCGCGCAGAAACACCC 34110
Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160
| || | | || |||||||| || | || ||| | ||| | ||||
Sbjct 34111 GTCTACGACTTCAAGAAGCTCCACGATGTCGCCAAGGTTGTTGCTCGCAACTTGAACAAG 34170
Query 105161 GTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217
| || || || | ||||| | |||| ||| ||| || || | | | |||
Sbjct 34171 ATCATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGT---TCCAACAAGCGTCAC 34227
Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGC 105276
|| || || ||||| ||||| || |||||||| |||| ||| | | | || | |
Sbjct 34228 CGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGC-C 34286
Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336
||| || || ||| || ||||| | || | || ||||||||||| || ||||
Sbjct 34287 ATTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGG 34346
Query 105337 CGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396
|||||||| || | ||| ||||| | | || |||||||| |||| |||||
Sbjct 34347 TGCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGG 34406
Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGC 105452
|| || || || || || | | || | ||| ||| |||| || | |||||||
Sbjct 34407 CTCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGT-GGAATGTCACACCCACCAAGC 34465
Query 105453 TTCACTACGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAG 105510
| || ||||||| | ||||| || | || ||| || | ||| | || |||
Sbjct 34466 T---CTGGGACTGGGCGACGCTCAAAGAGCAGATTGCAA--AGCATGGTATCCGCAAC-- 34518
Query 105511 TCTCCTCATG---GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567
|| ||| || || || ||||| || || ||||| |||| || ||||| |||||
Sbjct 34519 TC-CCTGTTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTGGGTTTCAATGA 34577
Query 105568 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627
||||||||| |||||||||| ||||| || | | | ||| || || |||||
Sbjct 34578 ATGCTTTGAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCCGGTGAGTTCCA 34637
Query 105628 GATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 105684
| | || ||| | ||| |||| ||| ||||| || |||||||| || |
Sbjct 34638 GGTGGTGAACCCTTGGTTGCTCAAGGAT---CTCGTTGAGATGGGACTCTGGTCAGAGAA 34694
Query 105685 TATGAAGGATCTCAT 105699
||||||| ||| |||
Sbjct 34695 TATGAAGAATCGCAT 34709
Score = 86.0 bits (94), Expect = 7e-12
Identities = 139/197 (71%), Gaps = 10/197 (5%)
Strand=Plus/Plus
Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGCGA 9752
||| || ||||| | ||| || |||||||| || | || || ||||| |||
Sbjct 591537 TCCAACAGCATCGAGCTCGTCGATGAAGACAATTGAAGGGGCCTTCTCCTTCGCCTGCG- 591595
Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812
| ||||| || || | |||||| || || |||||||||||||| || |||||| |
Sbjct 591596 ---CGAAGAGTTCTCGAATACGCTTCGCACCAACACCAACAAACATTTCGTCAAAGTCAG 591652
Query 9813 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871
| | || ||| || |||||| || || | || || ||||||||||| || || |||
Sbjct 591653 AGCCTGA-CATGAAGAAGAAGGGCACGTTGGCCTCCCCAGCAATGGCTCGAGCAAGGAGA 591711
Query 9872 GTCTTACCCGTACCTGG 9888
|| || || ||||||||
Sbjct 591712 GTTTTGCCGGTACCTGG 591728
>seq23
Length=690853
Score = 136 bits (150), Expect = 5e-27
Identities = 182/250 (73%), Gaps = 6/250 (2%)
Strand=Plus/Plus
Query 94709 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTA 94768
|||| ||||| || || ||| | ||| | ||||| || | | ||||| || |||||
Sbjct 88694 AGCACCTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCAC 88753
Query 94769 TGAAGTGGTTTG-ATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 94825
|| ||| ||| | || | |||| | ||||||| ||| || | || |||||
Sbjct 88754 TGCGCTGGATTGCAGACGACGAGTC---TACCTTTGCACTGCGTCTTGTGGCTTTTGCTG 88810
Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885
||| ||||| ||||| |||||||| || ||| | | || | ||||||||||||||| |
Sbjct 88811 CTGTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTG 88870
Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945
|||||||||| || ||| ||| ||| ||||| ||||||||||||||||| ||||||
Sbjct 88871 GTCTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACA 88930
Query 94946 AAGAGTTTGC 94955
||| || ||
Sbjct 88931 CAGATTTCGC 88940
>seq2
Length=565986
Score = 111 bits (122), Expect = 2e-19
Identities = 251/372 (67%), Gaps = 13/372 (3%)
Strand=Plus/Minus
Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668
|||| || ||||||||||| | || ||||| | ||| ||| |||||||| || |
Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613
Query 9669 CTGGCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724
||| || | |||||| || || |||||| | || ||||| ||||| | |||
Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553
Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784
|||||||| ||| ||| | ||| || |||| | || || || || | |||
Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493
Query 9785 ACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTAG 9842
||||| |||||||| ||||| || | || | | || | || ||| || || |
Sbjct 335492 ACACCGACAAACATTTCCACGAACTCTGAACCACTGACGCT--GAAGAAAGGTACGCCTG 335435
Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9902
|||||| ||| | ||| || || || ||||| || ||||||||| ||| | || |
Sbjct 335434 CTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAA 335375
Query 9903 GGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAA 9960
||||||||| || |||||||||||| |||| | || || |||| | ||| || ||
Sbjct 335374 TGGCACCTCGAGGGATCTTGGCGCCAAGCTTCTCA--TAGATCCCAGGCTCCTTGAGGAA 335317
Query 9961 ATCCACAATTTC 9972
| |||| |||
Sbjct 335316 CTTGACAAATTC 335305
>seq11
Length=330268
Score = 102 bits (112), Expect = 1e-16
Identities = 319/486 (66%), Gaps = 16/486 (3%)
Strand=Plus/Plus
Query 168278 cccGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337
|| ||||| |||||| |||||||| || || | ||| || || |||| || |
Sbjct 286039 CCAGTACCAATACCCGAGGTACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCAT 286098
Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTC--TCG 168395
|||||||| | | |||| || || || || ||||| | ||| |||| |||
Sbjct 286099 TCTGGCTCTACCATGAGACCGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCG 286158
Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGC----TTTGTAAAGATATACCTCGTTTGA 168451
| |||||||||| | | || |||| | ||||||||| || | ||
Sbjct 286159 CA--AAAGATCTTTTTTG----TGATGCGAGCCAAGTCTGTAAAGATGTAACGCGCGCTG 286212
Query 168452 GACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGC-TCAAGAAGATT 168510
| ||||| ||||||||| | |||| ||||| || |||||| ||| |||||| |||
Sbjct 286213 GCAGCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAGAC-ATT 286271
Query 168511 GATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC 168570
||| ||||||| |||| || | ||||| |||||| || | || || |||||
Sbjct 286272 GATGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGAC 286331
Query 168571 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCA 168629
||||||||| ||||| ||| | | ||| | || | ||| | | ||| || || || |
Sbjct 286332 TTCACCGTGATGGTAGGCAGTGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGA 286390
Query 168630 TCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 168689
| || ||||||| || | |||||| || ||| || || || || |||||||
Sbjct 286391 TTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGA 286450
Query 168690 GACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGT 168749
||||||| | || | || ||||| | |||||||| |||| | ||| |
Sbjct 286451 AACCATCCATGACGTTGGGAATGGAACGAATGTTGTCCGCCATTGAGAAGAGAATGAGCT 286510
Query 168750 CCTTGT 168755
||||||
Sbjct 286511 CCTTGT 286516
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 583260479206560
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