Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq43 262 5e-65 seq23 136 5e-27 seq2 111 2e-19 seq11 102 1e-16 >seq43 Length=605699 Score = 262 bits (290), Expect = 5e-65 Identities = 980/1515 (65%), Gaps = 65/1515 (4%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || || | || |||||||| || |||||||| | | Sbjct 33223 CCGCAGCACATGATCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAGGCC 33282 Query 104282 TTGGAGACATACGACAAGATGTC--CCAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| || ||||| ||||| | ||| |||||| | || ||||||| Sbjct 33283 ATTGAGACATACAACCTCATGTCTTCCAAGCACT--TCACACACGCATCGCCTACCCTCT 33340 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | || ||| | || |||||||||| || | | ||||| | Sbjct 33341 TCAACGCCGGTACGCCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATG 33400 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 |||| ||| | || ||||| | || || | |||||| ||||| ||| || | Sbjct 33401 ACTCGATCGATGGCATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCG 33460 Query 104460 GGGGTATTGGGATGCACATCCA-TG-AT--GTG--AGAGCCAATAAATCTCGTATTCGGG 104513 | || ||||| | | |||| || || ||| | || || | | ||| | Sbjct 33461 GTGGCATTGGTCTCAATGTCCACTGCATCCGTGCAACAGGCAGTTAC------ATTGCCG 33514 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | ||||||||| ||| | || || || || ||||| || || || ||| ||| || Sbjct 33515 GTACAAATGGTACATCCAACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCA 33574 Query 104574 GCTATGTAAATCAAGCTGG------GCGTCGAAAGGGATCTATCGCAGTCTATCTTGAGC 104627 | ||||| | |||| ||| ||||| | || | | || | || |||||| Sbjct 33575 GGTATGTCGACCAAGGTGGCAACAAGCGTCCA---GGTGCCTTTGCTATTTACATTGAGC 33631 Query 104628 CATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG 104687 |||||||||| || ||| | | |||||||| ||||| ||||| || | || |||| Sbjct 33632 CATGGCACGCAGACATCTTTGGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGG 33691 Query 104688 CGCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTG 104747 || ||||| | |||| ||||||||||| || ||||||||||||||| | || | Sbjct 33692 TCCGCGCACGCGACTTGTTCTATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGG 33751 Query 104748 AGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCG 104807 |||||| |||| | ||||| ||| | || || || | |||||| | ||| | Sbjct 33752 AGGAGAATGGCGAGTGGTCGCTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGT 33811 Query 104808 TGGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGA 104867 || || || ||||||||| | ||||| ||||||||| | | || || | || Sbjct 33812 ATGGCGATGAATTTGAAGCCTTGTACACCAAGTACGAGAAGGCCGGCAAGGTCATGAAGA 33871 Query 104868 CGGTGCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACA 104926 | | | || | || | ||||| | ||||||||| || | ||||| ||||| || | Sbjct 33872 CCAT-CAAGGCACAGAAGCTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAAT 33930 Query 104927 CCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTG 104986 || | |||||| ||||| |||||||| |||| ||| || || ||||| | ||| Sbjct 33931 CCCTTCATGCTGTACAAGGACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACC 33990 Query 104987 ATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCT 105046 |||||| | ||| | ||||| || || | || | | | |||||| |||| Sbjct 33991 ATCAAGTGCAGCAACTTGTGTACCGAGATTGTCGAGTACTCGGCACCCGATGAGGTGGCT 34050 Query 105047 GTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT------ATGTGGATCCAGAGACAAAG 105100 || || || ||||| || || || | |||| | | || |||| ||| Sbjct 34051 GTCTGCAATCTCGCCTCCATTGCCTTGCCCACCTTCATCGACATGCGCGCAGAAACACCC 34110 Query 105101 ACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGA 105160 | || | | || |||||||| || | || ||| | ||| | |||| Sbjct 34111 GTCTACGACTTCAAGAAGCTCCACGATGTCGCCAAGGTTGTTGCTCGCAACTTGAACAAG 34170 Query 105161 GTTATTGATAGAAATTTTTACCC---CGTTGAGACTGCTCGTAAATCTAATATGAGACAC 105217 | || || || | ||||| | |||| ||| ||| || || | | | ||| Sbjct 34171 ATCATCGACGTCAACTACTACCCAGTCATTGAAGCTGAGCGT---TCCAACAAGCGTCAC 34227 Query 105218 CGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCAT-TCTTTGTCGCCACGC 105276 || || || ||||| ||||| || |||||||| |||| ||| | | | || | | Sbjct 34228 CGACCCATCGGTCTTGGTGTGCAAGGTCTCGCCGATGCCTTCTTGGCACTTAAGCTGC-C 34286 Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336 ||| || || ||| || ||||| | || | || ||||||||||| || |||| Sbjct 34287 ATTCGACTCGCCCGAGGCCAAGGAGCTGAACATCCAAATCTTTGAGACCATCTACCACGG 34346 Query 105337 CGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 |||||||| || | ||| ||||| | | || |||||||| |||| ||||| Sbjct 34347 TGCTCTTGAAGCCTCGTGTGAGCTGGCACAAGAAGAGGGTCCATACTCTACCTACGAGGG 34406 Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGA----GACCAAGC 105452 || || || || || || | | || | ||| ||| |||| || | ||||||| Sbjct 34407 CTCACCTGCCTCTCAGGGACTTTTGCAGTATGACTTGT-GGAATGTCACACCCACCAAGC 34465 Query 105453 TTCACTACGACTGGGAAGCTCTCAAGGAACGCAT--CAAGGAGAAGGGTCTTCGTAACAG 105510 | || ||||||| | ||||| || | || ||| || | ||| | || ||| Sbjct 34466 T---CTGGGACTGGGCGACGCTCAAAGAGCAGATTGCAA--AGCATGGTATCCGCAAC-- 34518 Query 105511 TCTCCTCATG---GCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGA 105567 || ||| || || || ||||| || || ||||| |||| || ||||| ||||| Sbjct 34519 TC-CCTGTTGTGTGCACCGATGCCCACTGCGTCCACGTCACAGATTCTGGGTTTCAATGA 34577 Query 105568 ATGCTTTGAACCCTACACGACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGT 105627 ||||||||| |||||||||| ||||| || | | | ||| || || ||||| Sbjct 34578 ATGCTTTGAGCCCTACACGAGCAACATTTACTCGCGTCGTGTCCTTGCCGGTGAGTTCCA 34637 Query 105628 GATTGTCAAC---AAGCATCTCGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGA 105684 | | || ||| | ||| |||| ||| ||||| || |||||||| || | Sbjct 34638 GGTGGTGAACCCTTGGTTGCTCAAGGAT---CTCGTTGAGATGGGACTCTGGTCAGAGAA 34694 Query 105685 TATGAAGGATCTCAT 105699 ||||||| ||| ||| Sbjct 34695 TATGAAGAATCGCAT 34709 Score = 86.0 bits (94), Expect = 7e-12 Identities = 139/197 (71%), Gaps = 10/197 (5%) Strand=Plus/Plus Query 9697 TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATT----TTCGCGAGCGA 9752 ||| || ||||| | ||| || |||||||| || | || || ||||| ||| Sbjct 591537 TCCAACAGCATCGAGCTCGTCGATGAAGACAATTGAAGGGGCCTTCTCCTTCGCCTGCG- 591595 Query 9753 CTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9812 | ||||| || || | |||||| || || |||||||||||||| || |||||| | Sbjct 591596 ---CGAAGAGTTCTCGAATACGCTTCGCACCAACACCAACAAACATTTCGTCAAAGTCAG 591652 Query 9813 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 9871 | | || ||| || |||||| || || | || || ||||||||||| || || ||| Sbjct 591653 AGCCTGA-CATGAAGAAGAAGGGCACGTTGGCCTCCCCAGCAATGGCTCGAGCAAGGAGA 591711 Query 9872 GTCTTACCCGTACCTGG 9888 || || || |||||||| Sbjct 591712 GTTTTGCCGGTACCTGG 591728 >seq23 Length=690853 Score = 136 bits (150), Expect = 5e-27 Identities = 182/250 (73%), Gaps = 6/250 (2%) Strand=Plus/Plus Query 94709 AGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGATTGGGCTA 94768 |||| ||||| || || ||| | ||| | ||||| || | | ||||| || ||||| Sbjct 88694 AGCACCTCTTCGATGCAATCGAGACAATCCCGTGCATCAAGCAAAAAGCAGACTGGGCAC 88753 Query 94769 TGAAGTGGTTTG-ATACAA--AGTCGCGTTCCTTTGCTGAGCGACTCTTCGCATTTGCGT 94825 || ||| ||| | || | |||| | ||||||| ||| || | || ||||| Sbjct 88754 TGCGCTGGATTGCAGACGACGAGTC---TACCTTTGCACTGCGTCTTGTGGCTTTTGCTG 88810 Query 94826 GTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAG 94885 ||| ||||| ||||| |||||||| || ||| | | || | ||||||||||||||| | Sbjct 88811 CTGTCGAGGGAATCTTTTTCTCTGGCTCGTTCGCCTCCATCTTTTGGCTCAAGAAGCGTG 88870 Query 94886 GTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCACC 94945 |||||||||| || ||| ||| ||| ||||| ||||||||||||||||| |||||| Sbjct 88871 GTCTCATGCCGGGACTCACCTTTAGCAATGAGCTCATCTCTCGTGACGAGGGTCTCCACA 88930 Query 94946 AAGAGTTTGC 94955 ||| || || Sbjct 88931 CAGATTTCGC 88940 >seq2 Length=565986 Score = 111 bits (122), Expect = 2e-19 Identities = 251/372 (67%), Gaps = 13/372 (3%) Strand=Plus/Minus Query 9609 TATCAAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCG 9668 |||| || ||||||||||| | || ||||| | ||| ||| |||||||| || | Sbjct 335671 TATCGAATCCATCCATCTCCACGAGCAGCTGGTTGAGTGTTGATTCACGTTCATCGTT-G 335613 Query 9669 CTGGCATA----CCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAG 9724 ||| || | |||||| || || |||||| | || ||||| ||||| | ||| Sbjct 335612 CTGCCAAATTGACCACCACGACCACGCGCCTTTCCAATAGCGTCAATTTCATCGACAAAG 335553 Query 9725 ACGATGCATGGTTGATTTTCGCGAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCC 9784 |||||||| ||| ||| | ||| || |||| | || || || || | ||| Sbjct 335552 ACGATGCACGGTGCATTCTTGCGCGCATTGGCAAACAAGTCGCGCACTCGAGAAGGACCC 335493 Query 9785 ACACCAACAAACATCTCCACAAAGTTTG--CGGCGGAACATTGGATGAAGGGGACATTAG 9842 ||||| |||||||| ||||| || | || | | || | || ||| || || | Sbjct 335492 ACACCGACAAACATTTCCACGAACTCTGAACCACTGACGCT--GAAGAAAGGTACGCCTG 335435 Query 9843 ATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGA 9902 |||||| ||| | ||| || || || ||||| || ||||||||| ||| | || | Sbjct 335434 CTTCACCAGCAGTTGCTTTTGCTAGCAGTGTCTTTCCTGTACCTGGCGGACCGGAAAGAA 335375 Query 9903 GGGCACCTCGTGGAATCTTGGCGCCA--CTTCCAAAGTATCTCTCAGGTTGCTTAAGAAA 9960 ||||||||| || |||||||||||| |||| | || || |||| | ||| || || Sbjct 335374 TGGCACCTCGAGGGATCTTGGCGCCAAGCTTCTCA--TAGATCCCAGGCTCCTTGAGGAA 335317 Query 9961 ATCCACAATTTC 9972 | |||| ||| Sbjct 335316 CTTGACAAATTC 335305 >seq11 Length=330268 Score = 102 bits (112), Expect = 1e-16 Identities = 319/486 (66%), Gaps = 16/486 (3%) Strand=Plus/Plus Query 168278 cccGTACCGATACCCTCTGTACCGTTCACGAGAACCATGGGGAGTGTTGGCATGTAGAAG 168337 || ||||| |||||| |||||||| || || | ||| || || |||| || | Sbjct 286039 CCAGTACCAATACCCGAGGTACCGTTGACTAGCAGCATAGGCAGCACTGGCGCATACCAT 286098 Query 168338 TCTGGCTCAATGGGGCGACCATCGTCATCCAAATAGTTGAGAATTGGATCATCTC--TCG 168395 |||||||| | | |||| || || || || ||||| | ||| |||| ||| Sbjct 286099 TCTGGCTCTACCATGAGACCGTCATCGCTCAGGTAATTGAGCAATGGCATATCTGCTTCG 286158 Query 168396 GATCAAAGATCTTTCGGGCATCTTTTGTGAGC----TTTGTAAAGATATACCTCGTTTGA 168451 | |||||||||| | | || |||| | ||||||||| || | || Sbjct 286159 CA--AAAGATCTTTTTTG----TGATGCGAGCCAAGTCTGTAAAGATGTAACGCGCGCTG 286212 Query 168452 GACGCATCCTTACCACCCATGAGACGCGTACCAAACTGACCACACGGC-TCAAGAAGATT 168510 | ||||| ||||||||| | |||| ||||| || |||||| ||| |||||| ||| Sbjct 286213 GCAGCATCTTTACCACCCTGGTGACGTGTACCGAATTGACCATTGGGCATCAAGAC-ATT 286271 Query 168511 GATATTGTTTGAACCCATGTAGTCATTCGCCAACTTGACAATCGTGTCCGCGAGAGAGAC 168570 ||| ||||||| |||| || | ||||| |||||| || | || || ||||| Sbjct 286272 GATGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACAATGGTCTGTGCAAGGGAGAC 286331 Query 168571 TTCACCGTGGTGGTACGCACTCTTCTCTGCGACAAATGCCGC-CAACTGCGCCACTTTCA 168629 ||||||||| ||||| ||| | | ||| | || | ||| | | ||| || || || | Sbjct 286332 TTCACCGTGATGGTAGGCAGTGTGCTCGCCAACGTA-GCCACAGAGCTGAGCAACCTTGA 286390 Query 168630 TCTCATCCTTGAGATTCTTGTGGAAGCATGCGTACATAACCTTGCGTTGCGAAGGCTTGA 168689 | || ||||||| || | |||||| || ||| || || || || ||||||| Sbjct 286391 TTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATTTTACGCTGTCCTGGCTTGA 286450 Query 168690 GACCATCCGCCATGTGTGCGATAGAACGCTTCAAGTCCGCCAAACTGAAGTTGACGAGGT 168749 ||||||| | || | || ||||| | |||||||| |||| | ||| | Sbjct 286451 AACCATCCATGACGTTGGGAATGGAACGAATGTTGTCCGCCATTGAGAAGAGAATGAGCT 286510 Query 168750 CCTTGT 168755 |||||| Sbjct 286511 CCTTGT 286516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260479206560