Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq43 230 3e-55 seq11 149 7e-31 seq23 107 2e-18 >seq43 Length=605699 Score = 230 bits (254), Expect = 3e-55 Identities = 528/783 (67%), Gaps = 14/783 (2%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| ||||| | || || || ||||| ||| | | | | | |||||| ||| Sbjct 33236 TCATGCGTGTCGCTGTTGGCATTCATGGTGATGACATTGAAAAG-GCCATTGAGACATAC 33294 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 || | ||| ||| |||| || ||||| |||| ||||| |||||||| |||||| Sbjct 33295 AACCTCATGTCTTCCAAGCACTTCACACACGCATCGCCTACCCTCTTCAACGCCGGTACG 33354 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 |||| || | ||| |||||||| || | |||||||||||||||||||| ||| Sbjct 33355 CCCAACCCACAACTCTCGTCTTGCTTCCTTGTCACAATGAAGGATGACTCGATCGATGGC 33414 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 |||||||| || ||||| ||||||| ||||| ||| | ||||| || ||| || Sbjct 33415 ATCTACGACACACTCAAAACGTGTGCCATGATCTCTAAGACAGCCGGTGGCATTGGTCTC 33474 Query 53432 CACTGCTCGAACG--TCCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 | || || | | ||||||| | |||| || || || || || || Sbjct 33475 AA-TG-TCCACTGCATCCGTGCAACAGGCAGTTACATTGCCGGTACAAATGGTACATCCA 33532 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || ||| | || ||||| || |||||||||||||| ||| |||| ||| |||| |||| Sbjct 33533 ACGGCATCATCCCCATGCTGCGTGTCTTCAACAACACTGCCAGGTATGTCGACCAAGGTG 33592 Query 53550 GTGGGAAGCG-CAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATG 53608 | ||||| | ||| | | || || || ||| | ||||| |||||||| ||||| | Sbjct 33593 GCAACAAGCGTCCAGGTG-CCTTTGCTATTTACATTGAGCCATGGCACGCAGACATCTTT 33651 Query 53609 GAGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTT 53668 | || || || |||| ||| || || | |||||| | ||| || ||| |||| Sbjct 33652 GGCTTCCTTGACTTGCGCAAGAACCACGGCAAGGAAGAGGTCCGCGCACGCGACTTGTTC 33711 Query 53669 ACAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTAC 53728 ||||| ||||| || || ||||||||| | |||||| || | | ||||||| Sbjct 33712 TATGCTCTCTGGATCCCTGATCTCTTCATGAAGCGTGTGGAGGAGAATGGCGAGTGGTCG 33771 Query 53729 CTGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAG 53788 || |||||||| ||||| || || || | || | || || || || || ||| | | Sbjct 33772 CTCATGTGCCCCAACGAATGTCCTGGTATGCACGAGGTGTATGGCGATGAATTTGAAGCC 33831 Query 53789 ATGTATCGGACGTACGCAGTTCAGGGCCGCTA---CAAGAAGAAGGTCAAGGCGCGTGAG 53845 |||| | ||||| || ||| | || | || ||||| ||||||| | || Sbjct 33832 TTGTACACCAAGTACG-AG--AAGGCCGGCAAGGTCATGAAGACCATCAAGGCACAGAAG 33888 Query 53846 GTATGGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAG 53905 | ||| | || || ||| || || |||||||| | || | |||| |||||| Sbjct 33889 CTGTGGTACGCTATTCTCGAGGCGCAAACTGAGACGGGCAATCCCTTCATGCTGTACAAG 33948 Query 53906 GATTCGGTCAACGAGAAGAGCAACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTA 53965 || | |||| ||| |||||||||||| |||| |||||| | |||||||| Sbjct 33949 GACGCCTGCAACCGCAAGTCGAACCAGAAGAACCTCGGTACCATCAAGTGCAGCAACTTG 34008 Query 53966 TGT 53968 ||| Sbjct 34009 TGT 34011 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/186 (73%), Gaps = 10/186 (5%) Strand=Plus/Plus Query 55744 GACGGTGTGGGAGATTCCACAGAAGAGTC-TGATTGACATGAGTGCTGATCGTGGTGCGT 55802 ||| || |||||| | | || || ||| |||| || ||| |||||| |||||||| | Sbjct 34776 GACTGTATGGGAGCTCTCTCAAAA-AGTGGTGATCGATATGGCTGCTGACCGTGGTGCCT 34834 Query 55803 ACATCGACCAGTCCCAGTCTCTGAAC----ATCTTCATGGAGAATCCTTCACTGGCCAAG 55858 || || ||||| || || || ||| |||| || || | || || | | || Sbjct 34835 TTATTGATCAGTCGCAATCCCTCAACTTGCATCT-CAAGGCG---CCGACATTCGGTAAA 34890 Query 55859 TTGAGCTCGATGCACTTTTACGGGTGGAAGAAGGGACTCAAGACGGGTATGTACTATCTG 55918 | | |||||||||||||| || ||||||||||||||||||||||| |||||||| ||| Sbjct 34891 ATTACATCGATGCACTTTTATGGTTGGAAGAAGGGACTCAAGACGGGCATGTACTACCTG 34950 Query 55919 CGGACC 55924 || ||| Sbjct 34951 CGTACC 34956 >seq11 Length=330268 Score = 149 bits (164), Expect = 7e-31 Identities = 211/297 (71%), Gaps = 0/297 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 || || |||||||| | ||| |||||||| || ||||| |||| ||||||||||| Sbjct 286192 GTAAAGATGTAACGCGCGCTGGCAGCATCTTTACCACCCTGGTGACGTGTACCGAATTGA 286251 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | ||| ||||| || | |||||| |||||||||||| |||||||||| |||| Sbjct 286252 CCATTGGGCATCAAGACATTGATGTTGTTTGCGCCCACAAAGGATTGAGCCAAGCCGACA 286311 Query 117425 ATCGTACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCC 117484 || || | ||| | ||||| || || || || || ||||| | |||||||| Sbjct 286312 ATGGTCTGTGCAAGGGAGACTTCACCGTGATGGTAGGCAGTGTGCTCGCCAACGTAGCCA 286371 Query 117485 GCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACC 117544 |||||||| ||||| || || | | | || || ||||| ||| ||| | | | Sbjct 286372 CAGAGCTGAGCAACCTTGATTTCCGCCTTGAGCTTGCGCTTGAAGCAAGCAAACAAAATT 286431 Query 117545 TTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 || ||||| | |||||| | ||||||| |||| || || ||||| || ||||| Sbjct 286432 TTACGCTGTCCTGGCTTGAAACCATCCATGACGTTGGGAATGGAACGAATGTTGTCC 286488 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 119083 GTTGGCTAGCTTGGCACCGTATCCGTTCCGACCACCGGTCACGCGCTGCTCCTCGTCGTT 119142 |||||| ||||||||||| || || || |||||||| ||| || | ||||||| Sbjct 288054 GTTGGCCAGCTTGGCACCATAACCATTGCGACCACCCGTCGTCTTCTTTTGGTCGTCGTC 288113 Query 119143 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGCTCGGGGAT 119187 ||||||||| |||||| | || ||||||||||||||||| || Sbjct 288114 GTAGTTGGACGAGGTCAACAAATGGCCAAAGATGAGCTCGGGAAT 288158 Score = 82.4 bits (90), Expect = 8e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 153849 GTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACGCGTTGTTCCTCGTCGTT 153908 ||| |||| ||||||||| |||||||||||||| |||||| | || ||||||| Sbjct 288054 GTTGGCCAGCTTGGCACCATAACCATTGCGACCACCCGTCGTCTTCTTTTGGTCGTCGTC 288113 Query 153909 GTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAGTTCAGGGAT 153953 ||||||||| |||||| | || ||||||||||| || || || Sbjct 288114 GTAGTTGGACGAGGTCAACAAATGGCCAAAGATGAGCTCGGGAAT 288158 >seq23 Length=690853 Score = 107 bits (118), Expect = 2e-18 Identities = 323/492 (66%), Gaps = 10/492 (2%) Strand=Plus/Minus Query 74805 AGGCCAGGCATAAGTCCACGCTTCTTCAACCAAAAGATGGCACAGAAGGAACCACTGAAG 74864 || || ||||| || ||||||||||| | ||||||||||| ||| || ||| ||| Sbjct 88886 AGTCCCGGCATGAGACCACGCTTCTTGAGCCAAAAGATGGAGGCGAACGAGCCAGAGAAA 88827 Query 74865 AAGATGCCTTCGACACACGCAAAGGCGACAAGGCGTTGCGCGAACGGTG---CATCGGAA 74921 ||||| || |||||| ||||| || ||||| || | || || | | | ||| Sbjct 88826 AAGATTCCCTCGACAGCAGCAAAAGCCACAAGACGCAGTGCAAAGGTAGACTCGTCGTCT 88767 Query 74922 GTCATCCAAGTCTGAGCCCATTCAGCTTTTCGTTTGACCGCA-GGGACAGTATCGATCGC 74980 | ||||| | | ||||| || |||||| | |||| ||| |||| || ||||| || Sbjct 88766 GCAATCCAGCGCAGTGCCCAGTCTGCTTTTTGCTTGA-TGCACGGGATTGTCTCGATTGC 88708 Query 74981 TTGGAAGAGG-CTTGCCTTCTCTTCGGGATCCTTGACGAGCTTGTCAATCATAAGTGAGT 75039 | ||||||| |||| | | | | ||||||| | | ||||| | || |||| Sbjct 88707 ATCGAAGAGGTGCTGCCGT-TGAGCTTGTTCCTTGATGTATGTATCAATGAGGAGGGAGT 88649 Query 75040 ACGTCTCCGAATGAATCGACTCGTTGAACGACTGGTACGCGTAGAAAGACCGCGCCTCTG 75099 | ||||| || || || || | |||| | | ||||| | || ||||||| Sbjct 88648 AGGTCTCTGAGTGGATGTTTTCCGCCATGATCTGGAAGCCATAGAAGCATCGTGCCTCTG 88589 Query 75100 CAATCTGTACATCCTTTGAAAAATTCATGTCGATATTCTCCATGACGATGCCGTCCGAGG 75159 | || || || || || ||| | | | ||| || |||| ||||| || || Sbjct 88588 GTACTTGGACTTCGTTGGAGAAACGCTCGAGCAAATTTTCATTGACAATGCCATCACTGG 88529 Query 75160 CGGCGAAAAAAGCCAGTACCATTTTGATAAAGTGGCGCTCATCGTCAGTGAGTTTG---T 75216 |||| || ||||| || || ||| ||| ||| || ||||| |||| ||| | Sbjct 88528 CGGCAAAGAAAGCGAGGACGTGGGAGATGAAGAAGCGTTCGTCGTCGTTGAGCTTGTTCT 88469 Query 75217 CCCAATCCTTCAGGTCCCCCGCCAAATCAATCTCCTCGACCGTCCAGAAACTCCCAATCG 75276 |||| || | ||||||| | | |||||||||||| | |||||||| | | Sbjct 88468 CCCAGTCGTGCAGGTCCTTGGAGAGGTCAATCTCCTCGGCGGTCCAGAAGGATGCTTCTG 88409 Query 75277 CCTTTTTGTACA 75288 |||||||||||| Sbjct 88408 CCTTTTTGTACA 88397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215699031200