Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017-
04-20] 44 sequences; 12,928,838 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq43 232 8e-56
seq40 170 2e-37
seq11 93.3 5e-14
>seq43
Length=605699
Score = 232 bits (256), Expect = 8e-56
Identities = 1128/1771 (64%), Gaps = 85/1771 (5%)
Strand=Plus/Minus
Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097
|| ||||| |||||||||||||||||||| ||||||||||| || || | |||||| ||
Sbjct 34955 GTACGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGAT 34896
Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATG----TTCAGAGACTGAGACTGACA 80153
| | || | | ||| || | || ||| |||| || || || || ||||||
Sbjct 34895 GTAATTTTACCGAATGTCGG---CGCCTTGA-GATGCAAGTTGAGGGATTGCGACTGATC 34840
Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213
|| || || ||||| || || ||||| || || | ||||| | | ||||||||
Sbjct 34839 AATAAAGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATAC 34780
Query 80214 TGTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCCA 80268
|| || | ||| || ||| | || |||| | ||||||||| ||||
Sbjct 34779 AGTCTTGTAGAGGGCTTTCGT--CTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCA 34722
Query 80269 CCGTCCTTTACAATTTGATTTTTCA-ATTCAGACGTCCAGACACCAAGCTTGTGCAGATC 80327
|| || | || |||| |||| |||| | ||||| || | || |||||
Sbjct 34721 CCATCGGCAATGATGCGATTCTTCATATTCTCT-GACCAGAGTCCCATCTCAACGAGATC 34663
Query 80328 TTTCA-----CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382
|| | ||||| ||| | || ||||| || || ||| ||||||
Sbjct 34662 CTTGAGCAACCAAGG-----GTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAG 34608
Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442
|| | ||| | ||||| |||||||| || ||| || || ||||| | |||| |
Sbjct 34607 TAAATGTTGCTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGAC 34548
Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCG 80502
|| || |||||||| | |||||| || || || | || ||||| || | |||
Sbjct 34547 GCAGTGGGCATCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGCAATCTGCTC- 34489
Query 80503 CGCAAATCTGACCAAAAATCAACCCCAACGCT--------GTGACC--CCACATGTCGTG 80552
| ||| | || |||| ||| ||||| ||||| ||| |
Sbjct 34488 ------TTTGAGCGTCGCCCAGTCCCAGAGCTTGGTGGGTGTGACATTCCACAAGTCATA 34435
Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612
|||||| | |||| || || || || ||| || | || ||| || ||||| ||||
Sbjct 34434 CTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCT-TCTT 34376
Query 80613 G-GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671
| |||||||||||||| | ||| || |||| || ||| |||||||| |||
Sbjct 34375 GTGCCAGCTCACACGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGT 34316
Query 80672 TCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730
||| | || | |||| || |||||| | || | || ||| | || ||
Sbjct 34315 TCAGCTCCTTG-GCCTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCG 34257
Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGA 80790
|| || || || || | |||| || ||||| |||||||| || ||||| || ||
Sbjct 34256 AGACCTTGCACACCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATG 34197
Query 80791 ATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACA 80850
| |||||| |||| ||||||| ||||| |||||| | ||||||| | |||
Sbjct 34196 ACTGGGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACA 34137
Query 80851 TCATGAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCG--GAAGGCTC-- 80904
|| || || |||| |||||| | ||| || | | ||| || |||||
Sbjct 34136 TCGTGGAGCTTCTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGC 34077
Query 80905 ------AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATT 80958
| ||| || |||||||| || |||||||| || | | | ||||||| ||
Sbjct 34076 AAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATC 34017
Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018
|| || ||||| || |||| || ||||| ||||| |||||||| |||||| ||||
Sbjct 34016 TCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTG 33957
Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078
|| ||||||||||| |||| | || | || ||||| || | || ||| || |||
Sbjct 33956 CAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCG 33897
Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138
| ||| | || | ||||||| ||| || ||||| | | | ||||||| |
Sbjct 33896 TACCACAGCTTCTGTGCCTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTG 33837
Query 81139 TAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTG-AGGTCTGGGCACTCGTTAGGGCA 81197
|| | || || | | || | | || ||| | | || || ||||| |||||
Sbjct 33836 TACAAGGCTTCAAATTCATCGCCATACACCTC-GTGCATACCAGGACATTCGTTGGGGCA 33778
Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257
||| || ||| ||| | | ||| ||| ||||||||| ||||||||||||||
Sbjct 33777 CATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAG 33718
Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317
|| ||||| |||||| ||| |||| || | || ||||| |||||| || ||
Sbjct 33717 AGCATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAG 33658
Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG 81377
||| | | |||||| || ||||||||||| | || | || | | | ||| ||||
Sbjct 33657 GAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGC-AAAGGCACCT--GGACG 33601
Query 81378 ------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431
|||||| |||| ||| || | |||||| ||| || ||||||| ||| |||||
Sbjct 33600 CTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGAT 33541
Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC--CCCTTGGCGCGCA--CCT 81487
||| || | || ||| || ||||| | || | || || | || || | |
Sbjct 33540 GATGCCGTTGGATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTTGCACGGATGCAG 33483
Query 81488 TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547
|| |||| ||||| |||||||| | ||| || ||| |||||| || | |
Sbjct 33482 TGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTG 33425
Query 81548 TCTCATAAATTCCCTCGAT---GCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604
| || || || || ||||| | ||| || | || |||| ||| || | || |
Sbjct 33424 TGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGA---CGAGA 33368
Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664
|| ||| | | ||||| ||||| || || || | ||||| |||| | |
Sbjct 33367 GTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGG 33308
Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724
||||| |||| || || || || | | ||| || ||||| ||||| || | ||
Sbjct 33307 AAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAG 33248
Query 81725 CTACACGCATAAACATGTACTGGGGCGTCTC 81755
| |||||||| | ||||| ||| || ||||
Sbjct 33247 CGACACGCATGATCATGTGCTGCGGTCTCTC 33217
Score = 201 bits (222), Expect = 1e-46
Identities = 177/221 (80%), Gaps = 0/221 (0%)
Strand=Plus/Minus
Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471
|||||||||||||| ||||| |||||||| ||||| ||||||||||| || || | |
Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497
Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531
|||| ||| | ||| | ||||||||||||||||| || ||||| || ||||||||||||
Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437
Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591
| ||||| ||||||||||| || || |||| ||| || || |||||||| || ||||
Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377
Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
||||| || ||||| || || || | |||||||| |||||
Sbjct 451376 AAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTCGTGGTGG 451336
Score = 188 bits (208), Expect = 8e-43
Identities = 178/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||||||||| ||||| || ||||| || || || ||||||||||||
Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||| || ||||||||||||||||| ||||| || || |||
Sbjct 451274 GACACCATTGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 451215
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| ||||| || ||||||| ||| || | || ||||| |||
Sbjct 451214 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAT 451155
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
| || ||||| || || || || || ||| | ||||| || |||||
Sbjct 451154 ATTCAGAAGGAGTCAACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 451108
Score = 179 bits (198), Expect = 4e-40
Identities = 176/227 (78%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || ||||||||| | || || ||||| ||||| |||||||| ||||||
Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| ||| | ||| || || || |||||||| || || || || ||||||
Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| ||||| || ||||| | ||| || | |||||||| ||
Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || || || | ||||||||||||||
Sbjct 450926 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTCGCGGTGG 450880
Score = 161 bits (178), Expect = 1e-34
Identities = 172/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| || || || ||||| | || || ||||| ||||| || || || || |||
Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| || ||||| ||||||||||| ||||| || ||||||
Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| ||||||||||| ||||| || ||||| | || || || |||||||| |||
Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || || || | ||||| ||||||||
Sbjct 450698 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCCGCGGTGG 450652
Score = 158 bits (174), Expect = 1e-33
Identities = 173/230 (75%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
|||||||| || |||||||| || || || ||||| || || || ||||| ||||||
Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||||| || | ||| || ||||| |||||||| || ||||| || ||||||
Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| || ||||||| ||| || | || ||||| ||
Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635
| || ||||| || || | || | || ||||||||||| || |||||
Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGGACA 450421
>seq40
Length=667070
Score = 170 bits (188), Expect = 2e-37
Identities = 174/227 (77%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||||||||| |||||||| || || |||||||| || || || ||||| |||||
Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | || | ||| | ||| | ||||| ||||||||||| || || || || ||||||
Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1397
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
|||||||| || |||||||| ||||| |||||||| | || || || |||||||| ||
Sbjct 1398 CAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAAC 1457
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| ||||| || ||||| || || ||| | ||||| || || ||
Sbjct 1458 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGTGGAGG 1504
>seq11
Length=330268
Score = 93.3 bits (102), Expect = 5e-14
Identities = 197/289 (68%), Gaps = 4/289 (1%)
Strand=Plus/Minus
Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022
|| |||||||| |||| ||| || ||||||| |||||| || | | | ||
Sbjct 286478 CGTTCCATTCCCAACGTCATGGATGGTTTCAAGCCAGGACAGCGTAAAATTTTGTTTGCT 286419
Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082
||| ||||| || || | || || ||||| || ||||| | |||||||| |
Sbjct 286418 TGCTTCAAGCGCAAGCTCAAGGCGGAAATCAAGGTTGCTCAGCTCTGTGGCTACGTTGGC 286359
Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTC-CAGGGCACCATTGTCAACCTTGC 32141
||||| || ||||| || ||||| || | || || || | ||||||||| | | ||
Sbjct 286358 GAGCACACTGCCTACCATCACGGTGAAGTCTCCCTTGCACAG-ACCATTGTCGGCTTGGC 286300
Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA-GCCATCTGGACAGTTTGGGA 32200
||| |||||| || ||||| ||| | || | || || ||| ||| || || || |
Sbjct 286299 TCAATCCTTTGTGGGCGCAAACAACATCAATGT-CTTGATGCCCAATGGTCAATTCGGTA 286241
Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249
| || | | ||||| || |||||||| ||| | ||||||||||| ||
Sbjct 286240 CACGTCACCAGGGTGGTAAAGATGCTGCCAGCGCGCGTTACATCTTTAC 286192
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570310086329280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |