Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Protomyces_20lactucaedebilis_20[genbank_20GCA_5F002105105.1_202017- 04-20] 44 sequences; 12,928,838 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq43 232 8e-56 seq40 170 2e-37 seq11 93.3 5e-14 >seq43 Length=605699 Score = 232 bits (256), Expect = 8e-56 Identities = 1128/1771 (64%), Gaps = 85/1771 (5%) Strand=Plus/Minus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||| |||||||||||||||||||| ||||||||||| || || | |||||| || Sbjct 34955 GTACGCAGGTAGTACATGCCCGTCTTGAGTCCCTTCTTCCAACCATAAAAGTGCATCGAT 34896 Query 80098 CTGAGCTTCGCAAGTGTGGGGTTCTCCATGAAGATG----TTCAGAGACTGAGACTGACA 80153 | | || | | ||| || | || ||| |||| || || || || |||||| Sbjct 34895 GTAATTTTACCGAATGTCGG---CGCCTTGA-GATGCAAGTTGAGGGATTGCGACTGATC 34840 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTGGAATTTCCCATAC 80213 || || || ||||| || || ||||| || || | ||||| | | |||||||| Sbjct 34839 AATAAAGGCACCACGGTCAGCAGCCATATCGATCACCACTTTTTGAGAGAGCTCCCATAC 34780 Query 80214 TGTACGATACAC--CTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCCA 80268 || || | ||| || ||| | || |||| | ||||||||| |||| Sbjct 34779 AGTCTTGTAGAGGGCTTTCGT--CTCTGCAGGGATGTTTGGGATGTTTTGCACAGAGCCA 34722 Query 80269 CCGTCCTTTACAATTTGATTTTTCA-ATTCAGACGTCCAGACACCAAGCTTGTGCAGATC 80327 || || | || |||| |||| |||| | ||||| || | || ||||| Sbjct 34721 CCATCGGCAATGATGCGATTCTTCATATTCTCT-GACCAGAGTCCCATCTCAACGAGATC 34663 Query 80328 TTTCA-----CAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGA 80382 || | ||||| ||| | || ||||| || || ||| |||||| Sbjct 34662 CTTGAGCAACCAAGG-----GTTCACCACCTGGAACTCACCGGCAAGGACACGACGCGAG 34608 Query 80383 TACAGGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTC 80442 || | ||| | ||||| |||||||| || ||| || || ||||| | |||| | Sbjct 34607 TAAATGTTGCTCGTGTAGGGCTCAAAGCATTCATTGAAACCCAGAATCTGTGACGTGGAC 34548 Query 80443 GCCGTCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCG 80502 || || |||||||| | |||||| || || || | || ||||| || | ||| Sbjct 34547 GCAGTGGGCATCGGTGCACACAACAGGGAGTTGCGGATACCATGCTTTGCAATCTGCTC- 34489 Query 80503 CGCAAATCTGACCAAAAATCAACCCCAACGCT--------GTGACC--CCACATGTCGTG 80552 | ||| | || |||| ||| ||||| ||||| ||| | Sbjct 34488 ------TTTGAGCGTCGCCCAGTCCCAGAGCTTGGTGGGTGTGACATTCCACAAGTCATA 34435 Query 80553 CTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTT 80612 |||||| | |||| || || || || ||| || | || ||| || ||||| |||| Sbjct 34434 CTGCAAAAGTCCCTGAGAGGCAGGTGAGCCCTCGTAGGTAGAGTATGGACCCTCT-TCTT 34376 Query 80613 G-GCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGT 80671 | |||||||||||||| | ||| || |||| || ||| |||||||| ||| Sbjct 34375 GTGCCAGCTCACACGAGGCTTCAAGAGCACCGTGGTAGATGGTCTCAAAGATTTGGATGT 34316 Query 80672 TCA-CACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCC 80730 ||| | || | |||| || |||||| | || | || ||| | || || Sbjct 34315 TCAGCTCCTTG-GCCTCGGGCGAGTCGAATGGCAGCTTAAGTGCCAAGAAGGCATCGGCG 34257 Query 80731 AGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGA 80790 || || || || || | |||| || ||||| |||||||| || ||||| || || Sbjct 34256 AGACCTTGCACACCAAGACCGATGGGTCGGTGACGCTTGTTGGAACGCTCAGCTTCAATG 34197 Query 80791 ATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACA 80850 | |||||| |||| ||||||| ||||| |||||| | ||||||| | ||| Sbjct 34196 ACTGGGTAGTAGTTGACGTCGATGATCTTGTTCAAGTTGCGAGCAACAACCTTGGCGACA 34137 Query 80851 TCATGAAGTTTCTGAAAGTCGAATT--GGTTCCCCTTCACAAATGCCG--GAAGGCTC-- 80904 || || || |||| |||||| | ||| || | | ||| || ||||| Sbjct 34136 TCGTGGAGCTTCTTGAAGTCGTAGACGGGTGTTTCTGCGCGCATGTCGATGAAGGTGGGC 34077 Query 80905 ------AGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATCTGTAAACTCGACGATT 80958 | ||| || |||||||| || |||||||| || | | | ||||||| || Sbjct 34076 AAGGCAATGGAGGCGAGATTGCAGACAGCCACCTCATCGGGTGCCGAGTACTCGACAATC 34017 Query 80959 TCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGGCGTTG 81018 || || ||||| || |||| || ||||| ||||| |||||||| |||||| |||| Sbjct 34016 TCGGTACACAAGTTGCTGCACTTGATGGTACCGAGGTTCTTCTGGTTCGACTTGCGGTTG 33957 Query 81019 CAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCG 81078 || ||||||||||| |||| | || | || ||||| || | || ||| || ||| Sbjct 33956 CAGGCGTCCTTGTACAGCATGAAGGGATTGCCCGTCTCAGTTTGCGCCTCGAGAATAGCG 33897 Query 81079 TCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTCGGCCACATACTTGGCG 81138 | ||| | || | ||||||| ||| || ||||| | | | ||||||| | Sbjct 33896 TACCACAGCTTCTGTGCCTTGATGGTCTTCATGACCTTGCCGGCCTTCTCGTACTTGGTG 33837 Query 81139 TAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTG-AGGTCTGGGCACTCGTTAGGGCA 81197 || | || || | | || | | || ||| | | || || ||||| ||||| Sbjct 33836 TACAAGGCTTCAAATTCATCGCCATACACCTC-GTGCATACCAGGACATTCGTTGGGGCA 33778 Query 81198 CATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAG 81257 ||| || ||| ||| | | ||| ||| ||||||||| |||||||||||||| Sbjct 33777 CATGAGCGACCACTCGCCATTCTCCTCCACACGCTTCATGAAGAGATCAGGGATCCAGAG 33718 Query 81258 GGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAG 81317 || ||||| |||||| ||| |||| || | || ||||| |||||| || || Sbjct 33717 AGCATAGAACAAGTCGCGTGCGCGGACCTCTTCCTTGCCGTGGTTCTTGCGCAAGTCAAG 33658 Query 81318 AAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGATCGACCCCTTGCGACG 81377 ||| | | |||||| || ||||||||||| | || | || | | | ||| |||| Sbjct 33657 GAAGCCAAAGATGTCTGCGTGCCATGGCTCAATGTAAATAGC-AAAGGCACCT--GGACG 33601 Query 81378 ------GCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGAT 81431 |||||| |||| ||| || | |||||| ||| || ||||||| ||| ||||| Sbjct 33600 CTTGTTGCCACCTTGGTCGACATACCTGGCAGTGTTGTTGAAGACACGCAGCATGGGGAT 33541 Query 81432 GATACCATCTGACTGACCGTTCGTACCCACGATACGCGAC--CCCTTGGCGCGCA--CCT 81487 ||| || | || ||| || ||||| | || | || || | || || | | Sbjct 33540 GATGCCGTTGGATGTACCATTTGTACCGGCAAT--GTAACTGCCTGTTGCACGGATGCAG 33483 Query 81488 TGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGG 81547 || |||| ||||| |||||||| | ||| || ||| |||||| || | | Sbjct 33482 TGGACATTG--AGACCAATGCCACCGGCTGTCTTAGAGATCATGGCACACGTTTTGAGTG 33425 Query 81548 TCTCATAAATTCCCTCGAT---GCTATCTTTTTTCATGTCAAGCAAGAAACAGCTTGACA 81604 | || || || || ||||| | ||| || | || |||| ||| || | || | Sbjct 33424 TGTCGTAGATGCCATCGATCGAGTCATCCTTCATTGTGACAAGGAAGCAAGA---CGAGA 33368 Query 81605 TCTGAGGGCTTTTTGAGCCGGCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGT 81664 || ||| | | ||||| ||||| || || || | ||||| |||| | | Sbjct 33367 GTTGTGGGTTGGGCGTACCGGCGTTGAAGAGGGTAGGCGATGCGTGTGTGAAGTGCTTGG 33308 Query 81665 TTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACCGTGAATACCGATAG 81724 ||||| |||| || || || || | | ||| || ||||| ||||| || | || Sbjct 33307 AAGACATGAGGTTGTATGTCTCAATGGCCTTTTCAATGTCATCACCATGAATGCCAACAG 33248 Query 81725 CTACACGCATAAACATGTACTGGGGCGTCTC 81755 | |||||||| | ||||| ||| || |||| Sbjct 33247 CGACACGCATGATCATGTGCTGCGGTCTCTC 33217 Score = 201 bits (222), Expect = 1e-46 Identities = 177/221 (80%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 27412 ATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGC 27471 |||||||||||||| ||||| |||||||| ||||| ||||||||||| || || | | Sbjct 451556 ATCTTTGTCAAGACACTTACTGGCAAGACCATTACCCTTGAGGTTGAATCCTCAGACACC 451497 Query 27472 ATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGT 27531 |||| ||| | ||| | ||||||||||||||||| || ||||| || |||||||||||| Sbjct 451496 ATTGACAATGTCAAGTCGAAAATTCAGGACAAGGAAGGGATTCCACCGGACCAGCAGCGT 451437 Query 27532 CTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAA 27591 | ||||| ||||||||||| || || |||| ||| || || |||||||| || |||| Sbjct 451436 TTGATTTTCGCTGGTAAGCAGCTTGAAGATGGTCGCACACTTGCAGACTACAACATCCAG 451377 Query 27592 AAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || ||||| || || || | |||||||| ||||| Sbjct 451376 AAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTCGTGGTGG 451336 Score = 188 bits (208), Expect = 8e-43 Identities = 178/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||||||||| ||||| || ||||| || || || |||||||||||| Sbjct 451334 ATGCAGATCTTTGTCAAGACTCTTACTGGAAAGACCATCACACTCGAGGTTGAGTCATCA 451275 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| || ||||||||||||||||| ||||| || || ||| Sbjct 451274 GACACCATTGACAATGTCAAGAGCAAGATTCAGGACAAGGAGGGCATTCCACCTGATCAG 451215 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || ||||||| ||| || | || ||||| ||| Sbjct 451214 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAT 451155 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || ||||| || || || || || ||| | ||||| || ||||| Sbjct 451154 ATTCAGAAGGAGTCAACCCTCCACCTTGTCCTCCGTCTCCGTGGTGG 451108 Score = 179 bits (198), Expect = 4e-40 Identities = 176/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || ||||||||| | || || ||||| ||||| |||||||| |||||| Sbjct 451106 ATGCAAATTTTCGTCAAGACGTTGACTGGAAAGACCATTACACTTGAGGTAGAGTCATCA 451047 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| ||| | ||| || || || |||||||| || || || || |||||| Sbjct 451046 GACACCATTGACAATGTCAAGAGCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAG 450987 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || ||||| | ||| || | |||||||| || Sbjct 450986 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGTCGCACTTTGGCAGACTACAAC 450927 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || || | |||||||||||||| Sbjct 450926 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTTCGCGGTGG 450880 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| | || || ||||| ||||| || || || || ||| Sbjct 450878 ATGCAGATTTTCGTTAAGACTTTGACTGGAAAGACCATTACACTCGAAGTCGAATCATCA 450819 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || ||||| ||||||||||| ||||| || |||||| Sbjct 450818 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAGGGCATTCCACCTGACCAG 450759 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| ||||||||||| ||||| || ||||| | || || || |||||||| ||| Sbjct 450758 CAGCGTCTCATTTTTGCTGGCAAGCAGCTTGAGGACGGCCGCACGCTTGCAGACTACAAT 450699 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || || | ||||| |||||||| Sbjct 450698 ATCCAGAAGGAGTCAACTCTCCACCTTGTGCTCCGTCTCCGCGGTGG 450652 Score = 158 bits (174), Expect = 1e-33 Identities = 173/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| || || || ||||| || || || ||||| |||||| Sbjct 450650 ATGCAAATTTTCGTCAAGACTCTGACTGGAAAGACCATCACACTCGAGGTAGAGTCATCA 450591 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||||| || | ||| || ||||| |||||||| || ||||| || |||||| Sbjct 450590 GACACCATTGACAACGTCAAGAGCAAGATTCAAGACAAGGAAGGTATTCCACCTGACCAG 450531 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| || ||||||| ||| || | || ||||| || Sbjct 450530 CAGCGTCTCATCTTTGCTGGAAAGCAGCTTGAGGATGGTCGCACTTTGGCCGACTACAAC 450471 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 | || ||||| || || | || | || ||||||||||| || ||||| Sbjct 450470 ATTCAGAAGGAGTCAACATTGCACTTGGTGTTGCGTCTTCGTGGAGGACA 450421 >seq40 Length=667070 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||||||||| |||||||| || || |||||||| || || || ||||| ||||| Sbjct 1278 ATGCAAATCTTCGTCAAGACCCTCACGGGCAAGACCATCACCCTCGAGGTCGAGTCCTCA 1337 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| | ||| | ||||| ||||||||||| || || || || |||||| Sbjct 1338 GACACAATCGACAATGTCAAGTCGAAAATCCAGGACAAGGAAGGCATCCCGCCTGACCAG 1397 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || |||||||| ||||| |||||||| | || || || |||||||| || Sbjct 1398 CAGCGTCTCATCTTTGCTGGCAAGCAGCTCGAGGACGGCCGCACGCTCGCAGACTACAAC 1457 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || ||||| || || ||| | ||||| || || || Sbjct 1458 ATCCAGAAGGAGTCGACTCTCCACCTCGTCCTCCGTCTCCGTGGAGG 1504 >seq11 Length=330268 Score = 93.3 bits (102), Expect = 5e-14 Identities = 197/289 (68%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 31963 CGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGCC 32022 || |||||||| |||| ||| || ||||||| |||||| || | | | || Sbjct 286478 CGTTCCATTCCCAACGTCATGGATGGTTTCAAGCCAGGACAGCGTAAAATTTTGTTTGCT 286419 Query 32023 TGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGCA 32082 ||| ||||| || || | || || ||||| || ||||| | |||||||| | Sbjct 286418 TGCTTCAAGCGCAAGCTCAAGGCGGAAATCAAGGTTGCTCAGCTCTGTGGCTACGTTGGC 286359 Query 32083 GAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTC-CAGGGCACCATTGTCAACCTTGC 32141 ||||| || ||||| || ||||| || | || || || | ||||||||| | | || Sbjct 286358 GAGCACACTGCCTACCATCACGGTGAAGTCTCCCTTGCACAG-ACCATTGTCGGCTTGGC 286300 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGA-GCCATCTGGACAGTTTGGGA 32200 ||| |||||| || ||||| ||| | || | || || ||| ||| || || || | Sbjct 286299 TCAATCCTTTGTGGGCGCAAACAACATCAATGT-CTTGATGCCCAATGGTCAATTCGGTA 286241 Query 32201 CCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC 32249 | || | | ||||| || |||||||| ||| | ||||||||||| || Sbjct 286240 CACGTCACCAGGGTGGTAAAGATGCTGCCAGCGCGCGTTACATCTTTAC 286192 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310086329280